NO17G00680.1, NO17G00680.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO17G00680.1
Unique Name	NO17G00680.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2414
Alignment location	chr17:236890..239592 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr17	genome	chr17:236890..239592 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO17G00680.1 vs.
Match: EWM21158.1 (alkyl sulfatase or beta-lactamase [Nannochloropsis gaditana])

HSP 1 Score: 684.5 bits (1765), Expect = 3.500e-193
Identity = 330/445 (74.16%), Postives = 383/445 (86.07%), Query Frame = 0

Query:  252 AFRKAESLRGARQFGSHVPLSVLPCSGLGQKADIELTLKTMGFLVPTHTFTGKTSFEVGGVDFQLVEAHGETHDHLFVWLPGKEALLCADLYYHSFPNLYSIRGSSPRPIRDWIRSLDAMRRLEPAFLLPSHTKPLKGKALINKQLTDYRDGIQWVYVATIRGANAGTSIDVLAEEIALPPHLSGQEALMELYGQIDWSVRAVFTNELGWFDGMAEALYRLPVQEQARRIVETMGGIEVVLRKAEEALREGGGEGGKEAEARWAMYLLRVVKEGGGEG--GREGGRVKALEVEALRLLGESVINTNGRGYLLEVALELEGKAPLSDPIVGPAFVEAIPIPLIFEVMVTRLNPEKSMDVHMCVVYAIGEKQYFVTIRRGVVEIEEGEKPLPGTPDPAGTFRTTEAVFRKIALNKLNPAAAVARGEATIEGDLAAFVKMNLMFEKGA 695
            A R+AE+LR +RQFG+HVPLS+LPCSGLG+KADIELTLKTM FL+PTHTF+G  SF VGGVDF+LVEAHGETHDHLFVWLPGK+ALLCADLYYHSFPNLYSIRGSSPRP+RDWIRSLD MRRL PAFLLPSHT+P+ GK LIN+QLTDYRDGIQWVY AT+RGANAG +++ LAE +ALPPHL  Q AL ELYGQIDWSVRA +TNELGWFDG A+ALY LPV+EQARR+VE  GG++ VL+KAE ALR GG E GKEAE +WA+YL+R+V++G  EG  G E  RVKAL+V ALR LGESVINTNGRGYLL+ ALELE KAPLSDP++G AF+EAIPIPL+ EVMV RL PE+ MDVHMC +Y IG  QYF+TIRRG+ EI  G + LPGTP+P G F T+EAVFRKIAL +++PA AVA G+A++EGDL AFV+M LMFE+GA
Sbjct:  205 ACRQAEALRASRQFGNHVPLSILPCSGLGRKADIELTLKTMAFLIPTHTFSGNVSFSVGGVDFELVEAHGETHDHLFVWLPGKDALLCADLYYHSFPNLYSIRGSSPRPLRDWIRSLDRMRRLRPAFLLPSHTQPVVGKDLINRQLTDYRDGIQWVYTATVRGANAGKTLEALAEGVALPPHLRAQTALDELYGQIDWSVRAAYTNELGWFDGTAQALYPLPVEEQARRVVEMGGGLDAVLKKAEAALR-GGEEMGKEAEFKWALYLIRLVQDGWAEGLSGGERKRVKALQVAALRGLGESVINTNGRGYLLQRALELEDKAPLSDPVLGAAFIEAIPIPLLLEVMVVRLVPERCMDVHMCAIYVIGSHQYFITIRRGICEIILGREALPGTPEPVGVFNTSEAVFRKIALKQISPAVAVASGQASVEGDLMAFVRMGLMFERGA 648

The following BLAST results are available for this feature:

BLAST of NO17G00680.1 vs.

BLAST of NO17G00680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21158.1	3.500e-193	74.16	alkyl sulfatase or beta-lactamase [Nannochloropsis...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO17G00680	NO17G00680	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO17G00680.1	NO17G00680.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO17G00680.1.cds1	NO17G00680.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G00680.1.cds2	NO17G00680.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G00680.1.cds3	NO17G00680.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr17:236890..239592-
coding sequence from alignment at chr17:236890..239592-

mRNA sequence

>NO17G00680.1 ID=NO17G00680.1|Name=NO17G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2414bp
ATGCCGATCACAAGGGCCACACGACGTCAGCCGCGCACGCACCGTCGGGA
CAAGGGCGAGGCGGACGAGGGAGCGCAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGAGGGAGGAGGAGGAGGACCTCAATGACGGCGATGAGAGTGACGAC
GATAAGCAGAAAAAGGCAGCTCGAGGAGGGCGTCCAACCAGCAGCTGTAG
AAGAGGAGTGGCAAGCACTAGCAGTAAGAGCAGCAGCAGCACCACCCCCA
CCAACAACCCCACGACCAGATCTACTGTCAGGAGTACCAGCGAGAACCTC
CTCTCCCTCGTCGGGGGGGTCTTGCTGGTCATTGTCGTGCTGATATGCAC
AGCCTTTTGGATGTATATCATCCCTCATGCGCAGAAAATTGACTATCGCA
AGACGAAAATGAACCCGCATCTTCTGCATAAGCATTGTCAGGAGCAAGTG
GGAGAGCCACGCGTTGAGGAAGTGGCGGAGGGAGTGTTTATGGCTATGGG
ATACGACCTCGCGAACACGATGTTGATTCGAACGAGTGAAGGACATGTTG
TGGTGGACGTGAGCATGAACCCCGAGCGTGCCGCGCGGGTACGACGCGAC
TTAGAAGCAGTCGCGGGCAAGGCATTTATCCACTCGATTATTTACACTCA
TTCTCATGTAGATCATGTCGGGGGGGCCGAGGCCTGGAAGGAGGAAGGGA
CTAAAATCTGGGGCACGGACGCATTGACGGACCATTACTTTAAGCAGTAC
GGGGCATTCAGGAAAGCGGAATCTTTACGCGGCGCCCGACAATTTGGAAG
TCATGTCCCTCTGTCTGTCCTTCCTTGCTCTGGTCTGGGGCAGAAAGCGG
ACATCGAGCTCACTTTGAAGACAATGGGGTTTCTCGTACCCACCCACACG
TTCACGGGGAAGACTTCCTTCGAGGTGGGCGGGGTGGACTTCCAGTTGGT
GGAGGCCCATGGGGAGACGCACGACCACCTCTTCGTGTGGTTGCCAGGGA
AAGAGGCGTTGTTGTGCGCTGATTTGTACTATCACTCGTTTCCGAACTTA
TACTCCATTCGGGGGTCGAGCCCTCGGCCCATCCGGGATTGGATCCGGTC
CTTGGATGCGATGAGGAGGCTGGAGCCGGCTTTCCTCTTGCCTTCGCACA
CGAAGCCTTTGAAGGGGAAGGCGTTGATTAATAAGCAACTGACTGATTAT
AGGGATGGGATCCAGTGGGTGTATGTGGCGACCATACGGGGGGCGAATGC
TGGCACGTCCATAGATGTTCTTGCGGAGGAGATTGCCCTCCCTCCGCATT
TGAGTGGACAGGAGGCATTAATGGAATTGTACGGGCAGATTGATTGGTCG
GTTCGTGCGGTGTTTACGAACGAGTTGGGGTGGTTTGATGGTATGGCGGA
GGCCCTCTACCGCCTGCCCGTCCAAGAACAAGCGAGACGGATCGTGGAAA
CGATGGGGGGGATAGAGGTGGTGTTGAGGAAGGCGGAGGAGGCTTTGAGG
GAGGGGGGGGGGGAGGGGGGGAAGGAGGCAGAGGCACGCTGGGCGATGTA
TTTGTTGCGCGTGGTGAAAGAGGGAGGGGGAGAGGGAGGGAGGGAGGGAG
GGAGGGTGAAGGCCTTAGAGGTCGAGGCCTTGCGGCTGTTGGGGGAGAGT
GTGATTAACACGAACGGAAGGGGATATTTGCTGGAGGTGGCGTTGGAGCT
GGAGGGAAAAGCACCGTTGAGCGACCCTATCGTCGGCCCTGCATTTGTGG
AAGCGATCCCGATTCCTTTAATTTTTGAAGTGATGGTCACGAGGTTGAAC
CCCGAGAAGAGCATGGATGTCCACATGTGTGTGGTATACGCGATTGGGGA
GAAGCAATACTTTGTCACCATTCGACGAGGCGTTGTTGAAATCGAGGAGG
GGGAAAAGCCACTGCCAGGTACCCCTGACCCGGCGGGGACGTTTAGAACG
ACGGAGGCTGTGTTTAGAAAGATTGCATTGAATAAGTTGAATCCGGCAGC
GGCCGTGGCGAGGGGGGAGGCGACGATTGAGGGAGACCTGGCAGCGTTCG
TAAAGATGAATCTGATGTTTGAGAAGGGAGCGTAGAAGGAGGGAGGGGGG
AAGGGTTGAGTCCGGCGGCAAGGTGGTGGTCAGATGGGAACAGGTCAGCC
ACCGTGTTAGGAGGGGTGATATTGGAGGGGTGATATTGAAGGATGGAGGG
GAAAGGAGATAGGGAGGAATCAGGGGATTTTCTTGGCTTGGTGCTGTAGG
GGCGAATGAGTGCATGGGAATCCCAAAAGAGAAGATAGAAAGTCATTTCG
ACTCGACTCGCAACATGACGGGCCAGCTGGACAAGAGCGCACAGTCTAGT
CGATATAAGCACGCACACATGTCAAATGTTTGAAAACAATCAACAAATAG
TGCGCGTCCGAAGA

protein sequence of NO17G00680.1

>NO17G00680.1-protein ID=NO17G00680.1-protein|Name=NO17G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=695bp
MPITRATRRQPRTHRRDKGEADEGAQEEEEEEEEEREEEEDLNDGDESDD
DKQKKAARGGRPTSSCRRGVASTSSKSSSSTTPTNNPTTRSTVRSTSENL
LSLVGGVLLVIVVLICTAFWMYIIPHAQKIDYRKTKMNPHLLHKHCQEQV
GEPRVEEVAEGVFMAMGYDLANTMLIRTSEGHVVVDVSMNPERAARVRRD
LEAVAGKAFIHSIIYTHSHVDHVGGAEAWKEEGTKIWGTDALTDHYFKQY
GAFRKAESLRGARQFGSHVPLSVLPCSGLGQKADIELTLKTMGFLVPTHT
FTGKTSFEVGGVDFQLVEAHGETHDHLFVWLPGKEALLCADLYYHSFPNL
YSIRGSSPRPIRDWIRSLDAMRRLEPAFLLPSHTKPLKGKALINKQLTDY
RDGIQWVYVATIRGANAGTSIDVLAEEIALPPHLSGQEALMELYGQIDWS
VRAVFTNELGWFDGMAEALYRLPVQEQARRIVETMGGIEVVLRKAEEALR
EGGGEGGKEAEARWAMYLLRVVKEGGGEGGREGGRVKALEVEALRLLGES
VINTNGRGYLLEVALELEGKAPLSDPIVGPAFVEAIPIPLIFEVMVTRLN
PEKSMDVHMCVVYAIGEKQYFVTIRRGVVEIEEGEKPLPGTPDPAGTFRT
TEAVFRKIALNKLNPAAAVARGEATIEGDLAAFVKMNLMFEKGA*

mRNA from alignment at chr17:236890..239592-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO17G00680.1 ID=NO17G00680.1|Name=NO17G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2703bp|location=Sequence derived from alignment at chr17:236890..239592- (Nannochloropsis oceanica)
ATGCCGATCACAAGGGCCACACGACGTCAGCCGCGCACGCACCGTCGGGA
CAAGGGCGAGGCGGACGAGGGAGCGCAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGAGGGAGGAGGAGGAGGACCTCAATGACGGCGATGAGAGTGACGAC
GATAAGCAGAAAAAGGCAGCTCGAGGAGGGCGTCCAACCAGCAGCTGTAG
AAGAGGAGTGGCAAGCACTAGCAGTAAGAGCAGCAGCAGCACCACCCCCA
CCAACAACCCCACGACCAGATCTACTGTCAGGAGTACCAGCGAGAACCTC
CTCTCCCTCGTCGGGGGGGTCTTGCTGGTCATTGTCGTGCTGATATGCAC
AGCCTTTTGGATGTATATCATCCCTCATGCGCAGAAAATTGACTATCGCA
AGACGAAAATGAACCCGCATCTTCTGCATAAGCATTGTCAGGAGCAAGTG
GGAGAGCCACGCGTTGAGGAAGTGGCGGAGGGAGTGTTTATGGCTATGGG
ATACGACCTCGCGAACACGATGTTGATTCGAACGAGTGAAGGACATGTTG
TGGTAAGATCACAAGAAAATGGATAGGGTGATAGACGCCGGGGGAGCCGC
GGCGCGCCACAACCCTCCCACCCCTCCCTTTCTCCCTCCCCTTCCTCCCT
CCCTTCTTCCCTTCCTTCAGGTGGACGTGAGCATGAACCCCGAGCGTGCC
GCGCGGGTACGACGCGACTTAGAAGCAGTCGCGGGCAAGGCATTTATCCA
CTCGATTATTTACACTCATTCTCATGTAGATCATGTCGGGGGGGCCGAGG
CCTGGAAGGAGGAAGGGACTAAAATCTGGGGCACGGACGCATTGACGGAC
CATTACTTTAAGCAGTACGGGGCATTCAGGTGAGGAGGACAACCAATTGG
GGAGCGGCAGTAAAAGAGGGATGGAAGGGGAAGAGCAGTAGAGAGAGAAG
GAAGGCGGTAGAGGCATGCAAAGCCGGTATCTTACACACTCCCTCCCTCT
CCCTCCCTCCCTCATCTTCTTCCTCTCTCCCTCCTTACTTTTATTAATAG
GAAAGCGGAATCTTTACGCGGCGCCCGACAATTTGGAAGTCATGTCCCTC
TGTCTGTCCTTCCTTGCTCTGGTCTGGGGCAGAAAGCGGACATCGAGCTC
ACTTTGAAGACAATGGGGTTTCTCGTACCCACCCACACGTTCACGGGGAA
GACTTCCTTCGAGGTGGGCGGGGTGGACTTCCAGTTGGTGGAGGCCCATG
GGGAGACGCACGACCACCTCTTCGTGTGGTTGCCAGGGAAAGAGGCGTTG
TTGTGCGCTGATTTGTACTATCACTCGTTTCCGAACTTATACTCCATTCG
GGGGTCGAGCCCTCGGCCCATCCGGGATTGGATCCGGTCCTTGGATGCGA
TGAGGAGGCTGGAGCCGGCTTTCCTCTTGCCTTCGCACACGAAGCCTTTG
AAGGGGAAGGCGTTGATTAATAAGCAACTGACTGATTATAGGGATGGGAT
CCAGTGGGTGTATGTGGCGACCATACGGGGGGCGAATGCTGGCACGTCCA
TAGATGTTCTTGCGGAGGAGATTGCCCTCCCTCCGCATTTGAGTGGACAG
GAGGCATTAATGGAATTGTACGGGCAGATTGATTGGTCGGTTCGTGCGGT
GTTTACGAACGAGTTGGGGTGGTTTGATGGTATGGCGGAGGCCCTCTACC
GCCTGCCCGTCCAAGAACAAGCGAGACGGATCGTGGAAACGATGGGGGGG
ATAGAGGTGGTGTTGAGGAAGGCGGAGGAGGCTTTGAGGGAGGGGGGGGG
GGAGGGGGGGAAGGAGGCAGAGGCACGCTGGGCGATGTATTTGTTGCGCG
TGGTGAAAGAGGGAGGGGGAGAGGGAGGGAGGGAGGGAGGGAGGGTGAAG
GCCTTAGAGGTCGAGGCCTTGCGGCTGTTGGGGGAGAGTGTGATTAACAC
GAACGGAAGGGGATATTTGCTGGAGGTGGCGTTGGAGCTGGAGGGAAAAG
CACCGTTGAGCGACCCTATCGTCGGCCCTGCATTTGTGGAAGCGATCCCG
ATTCCTTTAATTTTTGAAGTGATGGTCACGAGGTTGAACCCCGAGAAGAG
CATGGATGTCCACATGTGTGTGGTATACGCGATTGGGGAGAAGCAATACT
TTGTCACCATTCGACGAGGCGTTGTTGAAATCGAGGAGGGGGAAAAGCCA
CTGCCAGGTACCCCTGACCCGGCGGGGACGTTTAGAACGACGGAGGCTGT
GTTTAGAAAGATTGCATTGAATAAGTTGAATCCGGCAGCGGCCGTGGCGA
GGGGGGAGGCGACGATTGAGGGAGACCTGGCAGCGTTCGTAAAGATGAAT
CTGATGTTTGAGAAGGGAGCGTAGAAGGAGGGAGGGGGGAAGGGTTGAGT
CCGGCGGCAAGGTGGTGGTCAGATGGGAACAGGTCAGCCACCGTGTTAGG
AGGGGTGATATTGGAGGGGTGATATTGAAGGATGGAGGGGAAAGGAGATA
GGGAGGAATCAGGGGATTTTCTTGGCTTGGTGCTGTAGGGGCGAATGAGT
GCATGGGAATCCCAAAAGAGAAGATAGAAAGTCATTTCGACTCGACTCGC
AACATGACGGGCCAGCTGGACAAGAGCGCACAGTCTAGTCGATATAAGCA
CGCACACATGTCAAATGTTTGAAAACAATCAACAAATAGTGCGCGTCCGA
AGA

Coding sequence (CDS) from alignment at chr17:236890..239592-

>NO17G00680.1 ID=NO17G00680.1|Name=NO17G00680.1|organism=Nannochloropsis oceanica|type=CDS|length=2085bp|location=Sequence derived from alignment at chr17:236890..239592- (Nannochloropsis oceanica)
ATGCCGATCACAAGGGCCACACGACGTCAGCCGCGCACGCACCGTCGGGA
CAAGGGCGAGGCGGACGAGGGAGCGCAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGAGGGAGGAGGAGGAGGACCTCAATGACGGCGATGAGAGTGACGAC
GATAAGCAGAAAAAGGCAGCTCGAGGAGGGCGTCCAACCAGCAGCTGTAG
AAGAGGAGTGGCAAGCACTAGCAGTAAGAGCAGCAGCAGCACCACCCCCA
CCAACAACCCCACGACCAGATCTACTGTCAGGAGTACCAGCGAGAACCTC
CTCTCCCTCGTCGGGGGGGTCTTGCTGGTCATTGTCGTGCTGATATGCAC
AGCCTTTTGGATGTATATCATCCCTCATGCGCAGAAAATTGACTATCGCA
AGACGAAAATGAACCCGCATCTTCTGCATAAGCATTGTCAGGAGCAAGTG
GGAGAGCCACGCGTTGAGGAAGTGGCGGAGGGAGTGTTTATGGCTATGGG
ATACGACCTCGCGAACACGATGTTGATTCGAACGAGTGAAGGACATGTTG
TGGTGGACGTGAGCATGAACCCCGAGCGTGCCGCGCGGGTACGACGCGAC
TTAGAAGCAGTCGCGGGCAAGGCATTTATCCACTCGATTATTTACACTCA
TTCTCATGTAGATCATGTCGGGGGGGCCGAGGCCTGGAAGGAGGAAGGGA
CTAAAATCTGGGGCACGGACGCATTGACGGACCATTACTTTAAGCAGTAC
GGGGCATTCAGGAAAGCGGAATCTTTACGCGGCGCCCGACAATTTGGAAG
TCATGTCCCTCTGTCTGTCCTTCCTTGCTCTGGTCTGGGGCAGAAAGCGG
ACATCGAGCTCACTTTGAAGACAATGGGGTTTCTCGTACCCACCCACACG
TTCACGGGGAAGACTTCCTTCGAGGTGGGCGGGGTGGACTTCCAGTTGGT
GGAGGCCCATGGGGAGACGCACGACCACCTCTTCGTGTGGTTGCCAGGGA
AAGAGGCGTTGTTGTGCGCTGATTTGTACTATCACTCGTTTCCGAACTTA
TACTCCATTCGGGGGTCGAGCCCTCGGCCCATCCGGGATTGGATCCGGTC
CTTGGATGCGATGAGGAGGCTGGAGCCGGCTTTCCTCTTGCCTTCGCACA
CGAAGCCTTTGAAGGGGAAGGCGTTGATTAATAAGCAACTGACTGATTAT
AGGGATGGGATCCAGTGGGTGTATGTGGCGACCATACGGGGGGCGAATGC
TGGCACGTCCATAGATGTTCTTGCGGAGGAGATTGCCCTCCCTCCGCATT
TGAGTGGACAGGAGGCATTAATGGAATTGTACGGGCAGATTGATTGGTCG
GTTCGTGCGGTGTTTACGAACGAGTTGGGGTGGTTTGATGGTATGGCGGA
GGCCCTCTACCGCCTGCCCGTCCAAGAACAAGCGAGACGGATCGTGGAAA
CGATGGGGGGGATAGAGGTGGTGTTGAGGAAGGCGGAGGAGGCTTTGAGG
GAGGGGGGGGGGGAGGGGGGGAAGGAGGCAGAGGCACGCTGGGCGATGTA
TTTGTTGCGCGTGGTGAAAGAGGGAGGGGGAGAGGGAGGGAGGGAGGGAG
GGAGGGTGAAGGCCTTAGAGGTCGAGGCCTTGCGGCTGTTGGGGGAGAGT
GTGATTAACACGAACGGAAGGGGATATTTGCTGGAGGTGGCGTTGGAGCT
GGAGGGAAAAGCACCGTTGAGCGACCCTATCGTCGGCCCTGCATTTGTGG
AAGCGATCCCGATTCCTTTAATTTTTGAAGTGATGGTCACGAGGTTGAAC
CCCGAGAAGAGCATGGATGTCCACATGTGTGTGGTATACGCGATTGGGGA
GAAGCAATACTTTGTCACCATTCGACGAGGCGTTGTTGAAATCGAGGAGG
GGGAAAAGCCACTGCCAGGTACCCCTGACCCGGCGGGGACGTTTAGAACG
ACGGAGGCTGTGTTTAGAAAGATTGCATTGAATAAGTTGAATCCGGCAGC
GGCCGTGGCGAGGGGGGAGGCGACGATTGAGGGAGACCTGGCAGCGTTCG
TAAAGATGAATCTGATGTTTGAGAAGGGAGCGTAG

Synonyms

Publications