NO17G00640.1, NO17G00640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G00640.1
Unique NameNO17G00640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2249
Alignment locationchr17:226500..228748 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:226500..228748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G00640.1 vs.
Match: KOO33486.1 (wd repeat-containing protein 27-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 149.4 bits (376), Expect = 3.300e-32
Identity = 142/463 (30.67%), Postives = 204/463 (44.06%), Query Frame = 0 
Query:   36 LSAATAYDSFYGSNLTQKLRDKFKLVDKPIVFHSRISSSGYGQQQKISHSKAKKYANMTAPPLPLILPRYPMEDEDGPPTVAYWSPRACDIPGP--------SSAAHVTASPLLDMAYSYKGDLLALAAMDGTVQV--FPLAKSRRRRPPTVFSASTAPVRSVSLSHSQELVLASSDDGIASLFYMGEICNRKNASMSRRVSPVVRIDPSFSSPHMSKKQSGGCRNDSIGGSSSSFTSISTVSNTAPSPPAVTAVS---FFYLDRYILLASQNKLSLHTYHIA--IPAKDALIRHHSRSLSSSSSSTSPAANATHTFHV---WVHDHAHQLTAVACLNSTLSPLILTACSDRSFSLLDATHGSFLRTFFDAHARSIHSLSVPNSSQFVASPSLPPSHLDVFASAAADSTVSLWDLRAGAAKIAFFNDHINRREKIGVAFSPCVRFLAVGSEDGVAYVYDLRKG 481
            +SA +      G+ +  KL    KL   P  FH +I+SSGYG+   +    A   + + A          P+    G    A  + R     GP        SSA     S  + +A+S     +A+AA DGTV +   P  +     PPT+     A + SV  SHS  L L++S DG A L+ +               +P++R D      H++     G              ++ T +    +PP  T V    FFYLD ++LLA+ + L L++Y +    P  DA                + AA   H++ +   W    AH +T  A  NS LSPL L A SDRS  ++D   G  +    DAH R +  L +   S   A+   P +  D+F SAA D  V LWDLR+ A+ +     H+NR   IG A SPC+R++A GSED  AY+YD R G
Sbjct:    1 MSAPSELGKVAGAVVGAKLAATGKLAATPATFHRKIASSGYGKPP-VMKLHAGGPSTLAARAAAAAAAGGPV----GKGGAAVLARRYSPAEGPMCHLQVENSSAPRPLDSAAIRLAFSPDATRIAIAAADGTVAIQRLPARRHSHVAPPTLLGHRAA-ISSVHWSHSGRLFLSASADGSACLWDVAP-------DTKPPAAPLLRFD------HLTHPPRPG--------------AVPTTAEALANPPLSTEVRGARFFYLDTFVLLAAGSGLHLYSYALGPRAPTHDA----------------TRAAELRHSYRLQTRWPLSRAHHITCFAAANSFLSPLALIAGSDRSIEVVDLGTGQRVLELEDAHERPVQLLRLHEGS---AAGDTPTAGHDLFLSAALDGAVKLWDLRS-ASCVRRLGAHVNRVHPIGAALSPCLRYVATGSEDRSAYLYDARSG 410
The following BLAST results are available for this feature:
BLAST of NO17G00640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
KOO33486.13.300e-3230.67wd repeat-containing protein 27-like protein [Chry... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G00640NO17G00640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G00640.1NO17G00640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G00640.1.cds1NO17G00640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G00640.1 ID=NO17G00640.1|Name=NO17G00640.1|organism=Nannochloropsis oceanica|type=mRNA|length=2249bp
GGGGAGTGGGGAAGGAGCGTGTTGGTGTTTAAGAAGATTGGCAGAGTTCC
CTCGAAGGAAAGGCAAGAATGATGATGCCTTGAATGTCGTGGATGGGGTG
GGTGGCGGCGCAAGGCTGGACACCAACATGCCGTGGACAAGCAGCCGAGA
AAAAGGAAAGCGAAACGCAAAAATGTGCGTGTTGAGTACGCAAAGTGTGG
CATGCAAGACACGCAAGGAGTGCAGGACGTAGGGAGCACAGAGTGGGTGG
AGAAGAGCGGTGGACGCTCGGGCGACATCTGCCTGTTGTTGGCGTCGACT
GAGACCGCCTCAACATCTTTTGCACCTCATCAATATCAAATTGGCAATTC
TAGCATTAGTATGTCATGGCTTTGCCCATAGGTCTATCATGCCCGGTTGT
CCATTAATATTTTTGTCCCACATACACCCAAAAGCCCGCTCGTCTGGCTG
CGCGAACAGGCCCATCAACCCCAACCTGAATGTTTTTTTCCTTCTTCCCA
TCGTCCGCCACGGCAGCCGATCCTTTGCCGAGCTCGTCCCCACTGCGTGT
TGGAAGAGCATTGACACGTATAGAAGCCCCTGCCTTGTCGGCTGCCACGG
CGTACGACTCTTTTTATGGCAGCAATCTTACCCAGAAGCTACGGGACAAA
TTTAAGCTAGTGGACAAACCGATTGTCTTCCACTCTAGAATCTCGTCGTC
AGGTTATGGCCAGCAACAAAAAATATCACATTCAAAAGCAAAGAAATATG
CGAACATGACTGCACCACCTTTGCCACTTATCCTGCCGCGGTATCCGATG
GAAGACGAAGATGGGCCGCCAACCGTGGCCTACTGGAGCCCTCGAGCATG
CGACATTCCTGGTCCCTCTTCAGCAGCACATGTGACGGCCTCGCCTCTCC
TAGACATGGCTTATAGTTATAAGGGTGATTTATTGGCCCTCGCAGCCATG
GACGGCACGGTTCAAGTTTTTCCCCTTGCCAAGTCTCGTCGCCGCCGACC
CCCTACTGTTTTCTCCGCATCAACTGCTCCTGTGCGTTCCGTTTCCCTCA
GCCACAGCCAAGAGCTGGTGTTGGCCTCTTCGGACGATGGGATAGCCAGT
CTTTTTTACATGGGGGAAATTTGTAATCGCAAAAATGCGAGCATGAGCCG
TCGTGTCTCTCCAGTGGTCCGCATTGACCCTTCCTTTTCATCTCCTCATA
TGTCGAAAAAGCAAAGCGGAGGTTGTCGCAACGACAGTATCGGTGGCAGC
TCCAGTTCCTTCACTTCGATATCAACGGTATCAAATACAGCCCCGTCTCC
TCCCGCCGTCACCGCTGTTTCATTCTTCTATCTGGATAGATACATACTCC
TCGCCTCACAGAATAAGCTCTCCCTGCATACCTACCACATTGCAATACCC
GCCAAAGACGCCTTGATCCGTCATCACAGCCGCTCCCTCTCCTCCTCGTC
TTCTTCAACTAGTCCTGCTGCTAATGCAACTCACACATTCCATGTGTGGG
TACACGATCACGCCCACCAATTAACTGCTGTTGCTTGTCTCAACAGCACC
CTCTCCCCTCTCATCCTCACTGCCTGCTCCGACCGCTCCTTCTCCCTCCT
CGACGCCACCCATGGAAGCTTCTTGCGTACATTTTTTGACGCGCATGCCC
GTTCCATCCACTCTCTAAGCGTGCCAAACTCCTCTCAATTCGTCGCGTCT
CCCTCCCTTCCTCCATCCCACCTGGACGTGTTTGCGAGTGCTGCTGCTGA
TAGCACGGTATCACTTTGGGACTTGAGAGCAGGAGCTGCCAAGATTGCTT
TTTTCAATGATCATATCAATCGACGAGAGAAGATTGGAGTCGCCTTTTCA
CCTTGTGTCAGATTTTTGGCCGTTGGGAGTGAGGATGGTGTGGCTTACGT
ATATGACTTGAGGAAGGGGAGGGAGACGGTATATACCACTAGCACTAGCA
GCAGCAGCAACACCACTAACAGCAGCAATAGCAGCAGCACCAGCAGCGAG
ATGATAAATGAAGGCAAGGGAGTTGACAATGAGGAGGATGGAAGGGAGAG
GCGGTGCCAAGGAAGGAAGGGAGGAAGGGCGGGACCGACGCCTCATGGCA
ACGTTGTTTCGTGCGTGGCTTTCAACCCGTTGCATCCCGAGCTGGTGACT
GGCTCTTACGATGGAGGGGTACGTTTTCACGATCGGGGTGAGTGATTGGT
TAATGAATTTGTTTGTGAAGTGGCTGGAAGGAAACAAGTCGTTCTGGCA
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protein sequence of NO17G00640.1

>NO17G00640.1-protein ID=NO17G00640.1-protein|Name=NO17G00640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=572bp
MFFSFFPSSATAADPLPSSSPLRVGRALTRIEAPALSAATAYDSFYGSNL
TQKLRDKFKLVDKPIVFHSRISSSGYGQQQKISHSKAKKYANMTAPPLPL
ILPRYPMEDEDGPPTVAYWSPRACDIPGPSSAAHVTASPLLDMAYSYKGD
LLALAAMDGTVQVFPLAKSRRRRPPTVFSASTAPVRSVSLSHSQELVLAS
SDDGIASLFYMGEICNRKNASMSRRVSPVVRIDPSFSSPHMSKKQSGGCR
NDSIGGSSSSFTSISTVSNTAPSPPAVTAVSFFYLDRYILLASQNKLSLH
TYHIAIPAKDALIRHHSRSLSSSSSSTSPAANATHTFHVWVHDHAHQLTA
VACLNSTLSPLILTACSDRSFSLLDATHGSFLRTFFDAHARSIHSLSVPN
SSQFVASPSLPPSHLDVFASAAADSTVSLWDLRAGAAKIAFFNDHINRRE
KIGVAFSPCVRFLAVGSEDGVAYVYDLRKGRETVYTTSTSSSSNTTNSSN
SSSTSSEMINEGKGVDNEEDGRERRCQGRKGGRAGPTPHGNVVSCVAFNP
LHPELVTGSYDGGVRFHDRGE*
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mRNA from alignment at chr17:226500..228748+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G00640.1 ID=NO17G00640.1|Name=NO17G00640.1|organism=Nannochloropsis oceanica|type=mRNA|length=2249bp|location=Sequence derived from alignment at chr17:226500..228748+ (Nannochloropsis oceanica)
GGGGAGTGGGGAAGGAGCGTGTTGGTGTTTAAGAAGATTGGCAGAGTTCC
CTCGAAGGAAAGGCAAGAATGATGATGCCTTGAATGTCGTGGATGGGGTG
GGTGGCGGCGCAAGGCTGGACACCAACATGCCGTGGACAAGCAGCCGAGA
AAAAGGAAAGCGAAACGCAAAAATGTGCGTGTTGAGTACGCAAAGTGTGG
CATGCAAGACACGCAAGGAGTGCAGGACGTAGGGAGCACAGAGTGGGTGG
AGAAGAGCGGTGGACGCTCGGGCGACATCTGCCTGTTGTTGGCGTCGACT
GAGACCGCCTCAACATCTTTTGCACCTCATCAATATCAAATTGGCAATTC
TAGCATTAGTATGTCATGGCTTTGCCCATAGGTCTATCATGCCCGGTTGT
CCATTAATATTTTTGTCCCACATACACCCAAAAGCCCGCTCGTCTGGCTG
CGCGAACAGGCCCATCAACCCCAACCTGAATGTTTTTTTCCTTCTTCCCA
TCGTCCGCCACGGCAGCCGATCCTTTGCCGAGCTCGTCCCCACTGCGTGT
TGGAAGAGCATTGACACGTATAGAAGCCCCTGCCTTGTCGGCTGCCACGG
CGTACGACTCTTTTTATGGCAGCAATCTTACCCAGAAGCTACGGGACAAA
TTTAAGCTAGTGGACAAACCGATTGTCTTCCACTCTAGAATCTCGTCGTC
AGGTTATGGCCAGCAACAAAAAATATCACATTCAAAAGCAAAGAAATATG
CGAACATGACTGCACCACCTTTGCCACTTATCCTGCCGCGGTATCCGATG
GAAGACGAAGATGGGCCGCCAACCGTGGCCTACTGGAGCCCTCGAGCATG
CGACATTCCTGGTCCCTCTTCAGCAGCACATGTGACGGCCTCGCCTCTCC
TAGACATGGCTTATAGTTATAAGGGTGATTTATTGGCCCTCGCAGCCATG
GACGGCACGGTTCAAGTTTTTCCCCTTGCCAAGTCTCGTCGCCGCCGACC
CCCTACTGTTTTCTCCGCATCAACTGCTCCTGTGCGTTCCGTTTCCCTCA
GCCACAGCCAAGAGCTGGTGTTGGCCTCTTCGGACGATGGGATAGCCAGT
CTTTTTTACATGGGGGAAATTTGTAATCGCAAAAATGCGAGCATGAGCCG
TCGTGTCTCTCCAGTGGTCCGCATTGACCCTTCCTTTTCATCTCCTCATA
TGTCGAAAAAGCAAAGCGGAGGTTGTCGCAACGACAGTATCGGTGGCAGC
TCCAGTTCCTTCACTTCGATATCAACGGTATCAAATACAGCCCCGTCTCC
TCCCGCCGTCACCGCTGTTTCATTCTTCTATCTGGATAGATACATACTCC
TCGCCTCACAGAATAAGCTCTCCCTGCATACCTACCACATTGCAATACCC
GCCAAAGACGCCTTGATCCGTCATCACAGCCGCTCCCTCTCCTCCTCGTC
TTCTTCAACTAGTCCTGCTGCTAATGCAACTCACACATTCCATGTGTGGG
TACACGATCACGCCCACCAATTAACTGCTGTTGCTTGTCTCAACAGCACC
CTCTCCCCTCTCATCCTCACTGCCTGCTCCGACCGCTCCTTCTCCCTCCT
CGACGCCACCCATGGAAGCTTCTTGCGTACATTTTTTGACGCGCATGCCC
GTTCCATCCACTCTCTAAGCGTGCCAAACTCCTCTCAATTCGTCGCGTCT
CCCTCCCTTCCTCCATCCCACCTGGACGTGTTTGCGAGTGCTGCTGCTGA
TAGCACGGTATCACTTTGGGACTTGAGAGCAGGAGCTGCCAAGATTGCTT
TTTTCAATGATCATATCAATCGACGAGAGAAGATTGGAGTCGCCTTTTCA
CCTTGTGTCAGATTTTTGGCCGTTGGGAGTGAGGATGGTGTGGCTTACGT
ATATGACTTGAGGAAGGGGAGGGAGACGGTATATACCACTAGCACTAGCA
GCAGCAGCAACACCACTAACAGCAGCAATAGCAGCAGCACCAGCAGCGAG
ATGATAAATGAAGGCAAGGGAGTTGACAATGAGGAGGATGGAAGGGAGAG
GCGGTGCCAAGGAAGGAAGGGAGGAAGGGCGGGACCGACGCCTCATGGCA
ACGTTGTTTCGTGCGTGGCTTTCAACCCGTTGCATCCCGAGCTGGTGACT
GGCTCTTACGATGGAGGGGTACGTTTTCACGATCGGGGTGAGTGATTGGT
TAATGAATTTGTTTGTGAAGTGGCTGGAAGGAAACAAGTCGTTCTGGCA
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Coding sequence (CDS) from alignment at chr17:226500..228748+

>NO17G00640.1 ID=NO17G00640.1|Name=NO17G00640.1|organism=Nannochloropsis oceanica|type=CDS|length=1716bp|location=Sequence derived from alignment at chr17:226500..228748+ (Nannochloropsis oceanica)
ATGTTTTTTTCCTTCTTCCCATCGTCCGCCACGGCAGCCGATCCTTTGCC
GAGCTCGTCCCCACTGCGTGTTGGAAGAGCATTGACACGTATAGAAGCCC
CTGCCTTGTCGGCTGCCACGGCGTACGACTCTTTTTATGGCAGCAATCTT
ACCCAGAAGCTACGGGACAAATTTAAGCTAGTGGACAAACCGATTGTCTT
CCACTCTAGAATCTCGTCGTCAGGTTATGGCCAGCAACAAAAAATATCAC
ATTCAAAAGCAAAGAAATATGCGAACATGACTGCACCACCTTTGCCACTT
ATCCTGCCGCGGTATCCGATGGAAGACGAAGATGGGCCGCCAACCGTGGC
CTACTGGAGCCCTCGAGCATGCGACATTCCTGGTCCCTCTTCAGCAGCAC
ATGTGACGGCCTCGCCTCTCCTAGACATGGCTTATAGTTATAAGGGTGAT
TTATTGGCCCTCGCAGCCATGGACGGCACGGTTCAAGTTTTTCCCCTTGC
CAAGTCTCGTCGCCGCCGACCCCCTACTGTTTTCTCCGCATCAACTGCTC
CTGTGCGTTCCGTTTCCCTCAGCCACAGCCAAGAGCTGGTGTTGGCCTCT
TCGGACGATGGGATAGCCAGTCTTTTTTACATGGGGGAAATTTGTAATCG
CAAAAATGCGAGCATGAGCCGTCGTGTCTCTCCAGTGGTCCGCATTGACC
CTTCCTTTTCATCTCCTCATATGTCGAAAAAGCAAAGCGGAGGTTGTCGC
AACGACAGTATCGGTGGCAGCTCCAGTTCCTTCACTTCGATATCAACGGT
ATCAAATACAGCCCCGTCTCCTCCCGCCGTCACCGCTGTTTCATTCTTCT
ATCTGGATAGATACATACTCCTCGCCTCACAGAATAAGCTCTCCCTGCAT
ACCTACCACATTGCAATACCCGCCAAAGACGCCTTGATCCGTCATCACAG
CCGCTCCCTCTCCTCCTCGTCTTCTTCAACTAGTCCTGCTGCTAATGCAA
CTCACACATTCCATGTGTGGGTACACGATCACGCCCACCAATTAACTGCT
GTTGCTTGTCTCAACAGCACCCTCTCCCCTCTCATCCTCACTGCCTGCTC
CGACCGCTCCTTCTCCCTCCTCGACGCCACCCATGGAAGCTTCTTGCGTA
CATTTTTTGACGCGCATGCCCGTTCCATCCACTCTCTAAGCGTGCCAAAC
TCCTCTCAATTCGTCGCGTCTCCCTCCCTTCCTCCATCCCACCTGGACGT
GTTTGCGAGTGCTGCTGCTGATAGCACGGTATCACTTTGGGACTTGAGAG
CAGGAGCTGCCAAGATTGCTTTTTTCAATGATCATATCAATCGACGAGAG
AAGATTGGAGTCGCCTTTTCACCTTGTGTCAGATTTTTGGCCGTTGGGAG
TGAGGATGGTGTGGCTTACGTATATGACTTGAGGAAGGGGAGGGAGACGG
TATATACCACTAGCACTAGCAGCAGCAGCAACACCACTAACAGCAGCAAT
AGCAGCAGCACCAGCAGCGAGATGATAAATGAAGGCAAGGGAGTTGACAA
TGAGGAGGATGGAAGGGAGAGGCGGTGCCAAGGAAGGAAGGGAGGAAGGG
CGGGACCGACGCCTCATGGCAACGTTGTTTCGTGCGTGGCTTTCAACCCG
TTGCATCCCGAGCTGGTGACTGGCTCTTACGATGGAGGGGTACGTTTTCA
CGATCGGGGTGAGTGA
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Synonyms
Publications