NO17G00510.1, NO17G00510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G00510.1
Unique NameNO17G00510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2241
Alignment locationchr17:187836..190348 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:187836..190348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G00510.1 vs.
Match: EJK63081.1 (hypothetical protein THAOC_16283 [Thalassiosira oceanica])

HSP 1 Score: 275.4 bits (703), Expect = 5.200e-70
Identity = 179/422 (42.42%), Postives = 248/422 (58.77%), Query Frame = 0 
Query:  329 VTPEDNPETSETKPSVNQASVSAPLSSSSSAVQETERLNKQLRQMSLKYYKQRSFNSRLLSRMQTLQNKIQVCCRVRPSLLSPSSPAPTLAVEALSDVEVGFLDQRQVHGGSEQQEWKAFNFDRVWGPESTQEDVFLDVEALALSVMEGENACIMAYGQTGSGKTYTMGAGWEAGRVGWEEDE------EEEEKRGISHRLLEK--------MMELAKGEEEE--EGGIGESSSSSTTRGPVILEIRRDAENNVRLPGMVEREIRTFADASLLISQGNKARATAATNVHEHSSRSHSIIILNVTSRASGKK--GRLYLVDLAGSERVKKSAVTGAALKEAQHINKSLSALGDVMEALDKKSAHVPYRNSSLTHLLSECLGGPGAKEGGRTMMIVTVCPFSDVTDETRCTLQFATRARNIEFG 733
            V P+ + +    + S+ +A  S       SAV          R M+ K    ++ N++LL R+  LQ  IQVC R+RP     S        ++L + EVG  D+R        Q+WK++ FD+VWGPE++  DVF DVE LALSV+EG NACI AYGQTGSGKT+TM        +     +      EE+  R +S +  ++        M+E+   E  +  +     +SS S  + P  L++R+ A+N V +PG+ +  + +  +    + +GN  RATA+TN++EHSSRSH I+ +++TS     K  G LYL+DLAGSERV+KS V G ALKEAQHINKSLSALG+VMEALD+K++HVPYR+S LTHLL+  LGG       RTMMI+T CP ++  DET   L+FATR R I  G
Sbjct:    9 VAPDKDDDELAAESSIEEALKSLDAGKIESAV----------RNMAKKIDALKTHNAQLLQRILQLQGNIQVCARIRPMSDEESQRGFHEVAQSLGETEVGCFDERT-------QQWKSYAFDKVWGPETSNRDVFQDVEPLALSVIEGYNACIFAYGQTGSGKTFTMEGDEVQQGISQRTIKKIFTLLEEKSIRHLSQQHPDRFEYIVKIGMLEIYNDEVYDLLDPSFVAASSGSPRKKP--LDVRQSADNTVEVPGLRQEHVCSVDEVLKALDRGNANRATASTNLNEHSSRSHMILHVDITSGVGETKCRGSLYLIDLAGSERVRKSEVEGQALKEAQHINKSLSALGNVMEALDRKASHVPYRDSKLTHLLTNSLGG-----NSRTMMIMTACPHNESYDETTFALKFATRVRRINLG 406
The following BLAST results are available for this feature:
BLAST of NO17G00510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EJK63081.15.200e-7042.42hypothetical protein THAOC_16283 [Thalassiosira oc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G00510NO17G00510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G00510.1NO17G00510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G00510.1.cds1NO17G00510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00510.1.cds2NO17G00510.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00510.1.cds3NO17G00510.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G00510.1 ID=NO17G00510.1|Name=NO17G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=2241bp
ATGCGTCCCGAGAGCGCAACCCCTTCGCTAACCAACATCGAGGATGCCGA
CATGATCGAAATGCTCCGACAAGAAGTGTTGCGGAAGGACGAGGAGCTTG
CTTCCATGCAAAGGGCCTTTGAGGAGCTCCAAAACTCGTCCCAAGAAATT
GAGCAGGAATTGGAAGTCGAGCTGGGCCGAGCTGAAGCGACAATCACACA
CTTAACGAACGGCCAAACGAAACAGCAGACTTTGATCGTGTCACTGCAGA
GGAGTAGCAAGGAAAGCACAACAGAGATGGAGCGCATGGCGATCGAGCGT
GCAGAATGGCAGCGTCGTTGTGAGGATCTGACGACACAAAAATTGAATTT
AGAGACCGAATTTGATATGCTGGAAAGCAAGGTGAGAGTGTTGGAGGCCA
CAGAAGAGTCATTGAGGCATGAGGCGGAAAAATTGGGGGAGGAGAAGGTG
TATTTGTTGCATGAGGTAGATGATTTGAAGGCGAAAGGAGTAGAGGCAGA
AGCGAGGCTACAGCAGCAGTTGACGGACATGAGCCACGATTTACTCGTCT
TGCGATTGGAGAAGGAGAGGAGGGAGAAAATAGAGGAAGGACACGAGGAG
GGGAGGATTACGCGGTATTCGATAGAAGATGGGGACCTGTCGCTTACTGC
TGCTGCAGCTGCAGCGGAGATGGAAAAGGAGAGGGTGGAGGAGGCGTGGA
TGTGCGAAAAGGAAGTGTTATCTGCTCAAATCAGACAGTTGGAGGCGGCG
TTGTCGAGGAGTCGAAGGCGCTCGGTGGAAATGAACAGGTCCCTCATGTC
GGCCTCTTCCCCGCAACAGCAACGGCAGCAACAGCAGCAGCAACAACAGC
AACAGCAGCAGCAGCGACAGCAGCATCAGCCGCGTAAGGCATCAGCAACC
TTGCCACCATTGTCATCGTCAGGAGGAGGAGGAGGAGGAGGAGGGGACGG
AGGAGGAGGGGACGGAGGAGGAGGGGCTGTAGCAGTGACACCAGAGGATA
ATCCTGAAACATCTGAGACAAAGCCGAGCGTGAACCAGGCTTCTGTTTCG
GCGCCTTTGTCCTCGTCCTCATCCGCAGTGCAAGAGACAGAGAGGTTGAA
TAAACAATTGCGTCAGATGTCGTTGAAGTACTACAAGCAACGCTCCTTCA
ACTCCCGTCTCCTCTCTCGGATGCAAACCCTCCAAAACAAAATTCAAGTC
TGCTGCCGCGTTCGCCCCTCCCTCCTTTCCCCCTCCTCCCCCGCACCTAC
TTTGGCGGTGGAAGCTCTGAGTGATGTCGAGGTCGGTTTCTTGGATCAAC
GTCAGGTCCACGGAGGATCTGAGCAGCAGGAGTGGAAAGCTTTCAATTTT
GACAGGGTCTGGGGACCGGAAAGTACCCAGGAGGACGTTTTTTTGGATGT
GGAGGCGTTGGCGTTGTCGGTGATGGAGGGAGAAAACGCATGCATTATGG
CCTACGGTCAGACAGGGAGTGGGAAGACATACACGATGGGGGCGGGATGG
GAGGCAGGGAGGGTAGGCTGGGAGGAGGATGAGGAGGAGGAGGAGAAGAG
GGGGATAAGTCACCGGTTGTTGGAGAAGATGATGGAGTTGGCGAAGGGGG
AGGAGGAGGAGGAGGGAGGAATAGGGGAATCCTCCTCCTCCTCGACCACG
CGGGGACCCGTCATCCTCGAAATCCGTCGAGATGCCGAGAACAATGTCCG
GCTTCCGGGTATGGTCGAACGAGAAATCCGCACCTTCGCCGATGCTTCTC
TCCTCATATCACAGGGAAACAAGGCGAGGGCCACTGCAGCCACCAACGTC
CACGAGCATTCCTCCCGTTCTCATTCAATAATCATTTTGAACGTCACGAG
CCGAGCATCAGGGAAAAAAGGGAGGTTGTACCTGGTTGACTTGGCGGGAT
CGGAGCGAGTGAAAAAGAGTGCAGTGACAGGGGCCGCGCTGAAGGAAGCG
CAGCACATTAACAAGTCCTTGTCGGCCTTGGGAGATGTGATGGAGGCACT
AGACAAGAAGAGTGCTCATGTCCCTTACAGGAATAGCAGCTTGACTCACC
TACTTTCGGAGTGTTTGGGAGGCCCGGGGGCGAAGGAGGGAGGGAGAACC
ATGATGATCGTAACGGTCTGTCCGTTCAGTGATGTTACAGACGAGACGCG
TTGTACGTTGCAATTTGCGACGAGGGCAAGAAATATTGAATTTGGAGAGC
CAGGAGGACGGGGGGGGCGGGGAGGGAGGGAGGGAGTGTGA
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protein sequence of NO17G00510.1

>NO17G00510.1-protein ID=NO17G00510.1-protein|Name=NO17G00510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=747bp
MRPESATPSLTNIEDADMIEMLRQEVLRKDEELASMQRAFEELQNSSQEI
EQELEVELGRAEATITHLTNGQTKQQTLIVSLQRSSKESTTEMERMAIER
AEWQRRCEDLTTQKLNLETEFDMLESKVRVLEATEESLRHEAEKLGEEKV
YLLHEVDDLKAKGVEAEARLQQQLTDMSHDLLVLRLEKERREKIEEGHEE
GRITRYSIEDGDLSLTAAAAAAEMEKERVEEAWMCEKEVLSAQIRQLEAA
LSRSRRRSVEMNRSLMSASSPQQQRQQQQQQQQQQQQQRQQHQPRKASAT
LPPLSSSGGGGGGGGDGGGGDGGGGAVAVTPEDNPETSETKPSVNQASVS
APLSSSSSAVQETERLNKQLRQMSLKYYKQRSFNSRLLSRMQTLQNKIQV
CCRVRPSLLSPSSPAPTLAVEALSDVEVGFLDQRQVHGGSEQQEWKAFNF
DRVWGPESTQEDVFLDVEALALSVMEGENACIMAYGQTGSGKTYTMGAGW
EAGRVGWEEDEEEEEKRGISHRLLEKMMELAKGEEEEEGGIGESSSSSTT
RGPVILEIRRDAENNVRLPGMVEREIRTFADASLLISQGNKARATAATNV
HEHSSRSHSIIILNVTSRASGKKGRLYLVDLAGSERVKKSAVTGAALKEA
QHINKSLSALGDVMEALDKKSAHVPYRNSSLTHLLSECLGGPGAKEGGRT
MMIVTVCPFSDVTDETRCTLQFATRARNIEFGEPGGRGGRGGREGV*
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mRNA from alignment at chr17:187836..190348+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G00510.1 ID=NO17G00510.1|Name=NO17G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=2513bp|location=Sequence derived from alignment at chr17:187836..190348+ (Nannochloropsis oceanica)
ATGCGTCCCGAGAGCGCAACCCCTTCGCTAACCAACATCGAGGATGCCGA
CATGATCGAAATGCTCCGACAAGAAGTGTTGCGGAAGGACGAGGAGCTTG
CTTCCATGCAAAGGGCCTTTGAGGAGCTCCAAAACTCGTCCCAAGAAATT
GAGCAGGAATTGGAAGTCGAGCTGGGCCGAGCTGAAGCGACAATCACACA
CTTAACGAACGGCCAAACGAAACAGCAGACTTTGATCGTGTCACTGCAGA
GGAGTAGCAAGGAAAGCACAACAGAGATGGAGCGCATGGCGATCGAGCGT
GCAGAATGGCAGCGTCGTTGTGAGGATCTGACGACACAAAAATTGAATTT
AGAGACCGAATTTGATATGCTGGAAAGCAAGGTGAGAGTGTTGGAGGCCA
CAGAAGAGTCATTGAGGCATGAGGCGGAAAAATTGGGGGAGGAGAAGGTG
TATTTGTTGCATGAGGTAGATGATTTGAAGGCGAAAGGAGTAGAGGCAGA
AGCGAGGCTACAGCAGCAGTTGACGGACATGAGCCACGATTTACTCGTCT
TGCGATTGGAGAAGGAGAGGAGGGAGAAAATAGAGGAAGGACACGAGGAG
GGGAGGATTACGCGGTATTCGATAGAAGATGGGGACCTGTCGCTTACTGC
TGCTGCAGCTGCAGCGGAGATGGAAAAGGAGAGGGTGGAGGAGGCGTGGA
TGTGCGAAAAGGAAGTGTTATCTGCTCAAATCAGACAGTTGGAGGCGGCG
TTGTCGAGGAGTCGAAGGCGCTCGGTGGAAATGAACAGGTCCCTCATGTC
GGCCTCTTCCCCGCAACAGCAACGGCAGCAACAGCAGCAGCAACAACAGC
AACAGCAGCAGCAGCGACAGCAGCATCAGCCGCGTAAGGCATCAGCAACC
TTGCCACCATTGTCATCGTCAGGAGGAGGAGGAGGAGGAGGAGGGGACGG
AGGAGGAGGGGACGGAGGAGGAGGGGCTGTAGCAGTGACACCAGAGGATA
ATCCTGAAACATCTGAGACAAAGCCGAGCGTGAACCAGGCTTCTGTTTCG
GCGCCTTTGTCCTCGTCCTCATCCGCAGTGCAAGAGACAGAGAGGTTGAA
TAAACAATTGCGTCAGATGTCGTTGAAGGTAAGTGAAGAAGGGGGGAAGA
AAAAGATTGCATTTGCAGTTGGACTGTGCCTTAGAGACAGAGGGGAGTCC
GATCCATCCCGTACCTAACGTTTCCACCCTCCCGCCCTCCATCCCTCCAT
CCTTTCCAAACAGTACTACAAGCAACGCTCCTTCAACTCCCGTCTCCTCT
CTCGGATGCAAACCCTCCAAAACAAAATTCAAGTCTGCTGCCGCGTTCGC
CCCTCCCTCCTTTCCCCCTCCTCCCCCGCACCTACTTTGGCGGTGGAAGC
TCTGAGTGATGTCGAGGTCGGTTTCTTGGATCAACGTCAGGTCCACGGAG
GATCTGAGCAGCAGGAGTGGAAAGCTTTCAATTTTGACAGGGTCTGGGGA
CCGGAAAGTACCCAGGAGGACGTTTTTTTGGATGTGGAGGCGTTGGCGTT
GTCGGTGATGGAGGGAGAAAACGCATGCATTATGGCCTACGGTCAGACAG
GGAGTGGGAAGACATACACGATGGGGGCGGGATGGGAGGCAGGGAGGGTA
GGCTGGGAGGAGGATGAGGAGGAGGAGGAGAAGAGGGGGATAAGTCACCG
GTTGTTGGAGAAGATGATGGAGTTGGCGAAGGGGGAGGAGGAGGAGGAGG
GAGGAATAGGGGAATGTGAGGGAGTGTCATCGATGGTGGGGTATGTGGTG
GCCATGTCCATGGTCGAGGTCTACAATGACGACGTCCGGGATCTTTTACC
TCGAGGCCATCTCTCTCTCCCCTTCCCCCCCCCCTTTCCTCCTCCTCTTC
AGCCTCCTCCTCCTCGACCACGCGGGGACCCGTCATCCTCGAAATCCGTC
GAGATGCCGAGAACAATGTCCGGCTTCCGGGTATGGTCGAACGAGAAATC
CGCACCTTCGCCGATGCTTCTCTCCTCATATCACAGGGAAACAAGGCGAG
GGCCACTGCAGCCACCAACGTCCACGAGCATTCCTCCCGTTCTCATTCAA
TAATCATTTTGAACGTCACGAGCCGAGCATCAGGGAAAAAAGGGAGGTTG
TACCTGGTTGACTTGGCGGGATCGGAGCGAGTGAAAAAGAGTGCAGTGAC
AGGGGCCGCGCTGAAGGAAGCGCAGCACATTAACAAGTCCTTGTCGGCCT
TGGGAGATGTGATGGAGGCACTAGACAAGAAGAGTGCTCATGTCCCTTAC
AGGAATAGCAGCTTGACTCACCTACTTTCGGAGTGTTTGGGAGGCCCGGG
GGCGAAGGAGGGAGGGAGAACCATGATGATCGTAACGGTCTGTCCGTTCA
GTGATGTTACAGACGAGACGCGTTGTACGTTGCAATTTGCGACGAGGGCA
AGAAATATTGAATTTGGAGAGCCAGGAGGACGGGGGGGGCGGGGAGGGAG
GGAGGGAGTGTGA
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Coding sequence (CDS) from alignment at chr17:187836..190348+

>NO17G00510.1 ID=NO17G00510.1|Name=NO17G00510.1|organism=Nannochloropsis oceanica|type=CDS|length=2241bp|location=Sequence derived from alignment at chr17:187836..190348+ (Nannochloropsis oceanica)
ATGCGTCCCGAGAGCGCAACCCCTTCGCTAACCAACATCGAGGATGCCGA
CATGATCGAAATGCTCCGACAAGAAGTGTTGCGGAAGGACGAGGAGCTTG
CTTCCATGCAAAGGGCCTTTGAGGAGCTCCAAAACTCGTCCCAAGAAATT
GAGCAGGAATTGGAAGTCGAGCTGGGCCGAGCTGAAGCGACAATCACACA
CTTAACGAACGGCCAAACGAAACAGCAGACTTTGATCGTGTCACTGCAGA
GGAGTAGCAAGGAAAGCACAACAGAGATGGAGCGCATGGCGATCGAGCGT
GCAGAATGGCAGCGTCGTTGTGAGGATCTGACGACACAAAAATTGAATTT
AGAGACCGAATTTGATATGCTGGAAAGCAAGGTGAGAGTGTTGGAGGCCA
CAGAAGAGTCATTGAGGCATGAGGCGGAAAAATTGGGGGAGGAGAAGGTG
TATTTGTTGCATGAGGTAGATGATTTGAAGGCGAAAGGAGTAGAGGCAGA
AGCGAGGCTACAGCAGCAGTTGACGGACATGAGCCACGATTTACTCGTCT
TGCGATTGGAGAAGGAGAGGAGGGAGAAAATAGAGGAAGGACACGAGGAG
GGGAGGATTACGCGGTATTCGATAGAAGATGGGGACCTGTCGCTTACTGC
TGCTGCAGCTGCAGCGGAGATGGAAAAGGAGAGGGTGGAGGAGGCGTGGA
TGTGCGAAAAGGAAGTGTTATCTGCTCAAATCAGACAGTTGGAGGCGGCG
TTGTCGAGGAGTCGAAGGCGCTCGGTGGAAATGAACAGGTCCCTCATGTC
GGCCTCTTCCCCGCAACAGCAACGGCAGCAACAGCAGCAGCAACAACAGC
AACAGCAGCAGCAGCGACAGCAGCATCAGCCGCGTAAGGCATCAGCAACC
TTGCCACCATTGTCATCGTCAGGAGGAGGAGGAGGAGGAGGAGGGGACGG
AGGAGGAGGGGACGGAGGAGGAGGGGCTGTAGCAGTGACACCAGAGGATA
ATCCTGAAACATCTGAGACAAAGCCGAGCGTGAACCAGGCTTCTGTTTCG
GCGCCTTTGTCCTCGTCCTCATCCGCAGTGCAAGAGACAGAGAGGTTGAA
TAAACAATTGCGTCAGATGTCGTTGAAGTACTACAAGCAACGCTCCTTCA
ACTCCCGTCTCCTCTCTCGGATGCAAACCCTCCAAAACAAAATTCAAGTC
TGCTGCCGCGTTCGCCCCTCCCTCCTTTCCCCCTCCTCCCCCGCACCTAC
TTTGGCGGTGGAAGCTCTGAGTGATGTCGAGGTCGGTTTCTTGGATCAAC
GTCAGGTCCACGGAGGATCTGAGCAGCAGGAGTGGAAAGCTTTCAATTTT
GACAGGGTCTGGGGACCGGAAAGTACCCAGGAGGACGTTTTTTTGGATGT
GGAGGCGTTGGCGTTGTCGGTGATGGAGGGAGAAAACGCATGCATTATGG
CCTACGGTCAGACAGGGAGTGGGAAGACATACACGATGGGGGCGGGATGG
GAGGCAGGGAGGGTAGGCTGGGAGGAGGATGAGGAGGAGGAGGAGAAGAG
GGGGATAAGTCACCGGTTGTTGGAGAAGATGATGGAGTTGGCGAAGGGGG
AGGAGGAGGAGGAGGGAGGAATAGGGGAATCCTCCTCCTCCTCGACCACG
CGGGGACCCGTCATCCTCGAAATCCGTCGAGATGCCGAGAACAATGTCCG
GCTTCCGGGTATGGTCGAACGAGAAATCCGCACCTTCGCCGATGCTTCTC
TCCTCATATCACAGGGAAACAAGGCGAGGGCCACTGCAGCCACCAACGTC
CACGAGCATTCCTCCCGTTCTCATTCAATAATCATTTTGAACGTCACGAG
CCGAGCATCAGGGAAAAAAGGGAGGTTGTACCTGGTTGACTTGGCGGGAT
CGGAGCGAGTGAAAAAGAGTGCAGTGACAGGGGCCGCGCTGAAGGAAGCG
CAGCACATTAACAAGTCCTTGTCGGCCTTGGGAGATGTGATGGAGGCACT
AGACAAGAAGAGTGCTCATGTCCCTTACAGGAATAGCAGCTTGACTCACC
TACTTTCGGAGTGTTTGGGAGGCCCGGGGGCGAAGGAGGGAGGGAGAACC
ATGATGATCGTAACGGTCTGTCCGTTCAGTGATGTTACAGACGAGACGCG
TTGTACGTTGCAATTTGCGACGAGGGCAAGAAATATTGAATTTGGAGAGC
CAGGAGGACGGGGGGGGCGGGGAGGGAGGGAGGGAGTGTGA
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Synonyms
Publications