NO17G00470.1, NO17G00470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G00470.1
Unique NameNO17G00470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length837
Alignment locationchr17:173794..174764 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:173794..174764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G00470.1 vs.
Match: EWM21174.1 (plastid lipid associated protein [Nannochloropsis gaditana])

HSP 1 Score: 376.7 bits (966), Expect = 6.200e-101
Identity = 197/281 (70.11%), Postives = 229/281 (81.49%), Query Frame = 0 
Query:    1 MLAVSTSSISSSFLLPS-PASPPCGIRIPAP--LPAFLAPWSSLSTATGIKTPRALVQKEDTLLEAIQGLDRREIQNSAEARARVKSLIDDLEASKGIKKATATKEINGKWRLLYTSSDGTASPIQNTFVGSKAFAIYQEIDIAPPLSSSSSPSSPATVTNIVDFGDSIGALNVQALASTLFRPIPGFEPRKGDGKFFGINVLGVSKTEVPRDGDPADRIDFKFDNAGFDLGFLPFRVPYPVPFRLLGDEVKGWLEVTYLSPRLRLSRGNKGTIFVLQKVE 279
            ++ ++ S++SS+F L S PA      + P P  LPA LA W  L+     K+PR L+  E++LL+AIQGLDRRE+QNS +A+ RV  LI +LEA+KGI KAT T+EINGKWRLLYTSSD TASPIQNTFVG+KAFA+YQEIDIAP    S+S S+P TVTNIVDFG +IGALNVQALAST  RPIP F PR GDG+FFG+N+LG+SKTEVPRD DP DRIDFKFDNAGFDLG LPFR+PYPVPFRLL DEVKGWLEVTYLS RLR+SRGNKGTIFVL+KVE
Sbjct:   25 LVLIAFSALSSAFYLSSRPAFNVADGKPPTPTSLPAALASWP-LTLGASRKSPRVLLNTENSLLQAIQGLDRREVQNSVQAQGRVSGLIKELEAAKGIPKATTTREINGKWRLLYTSSDSTASPIQNTFVGNKAFAVYQEIDIAP----SASSSAPGTVTNIVDFGGAIGALNVQALASTPSRPIPNFVPRLGDGRFFGLNILGISKTEVPRDSDPDDRIDFKFDNAGFDLGLLPFRIPYPVPFRLLNDEVKGWLEVTYLSGRLRVSRGNKGTIFVLEKVE 300
The following BLAST results are available for this feature:
BLAST of NO17G00470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21174.16.200e-10170.11plastid lipid associated protein [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G00470NO17G00470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G00470.1NO17G00470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G00470.1.cds1NO17G00470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00470.1.cds2NO17G00470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G00470.1 ID=NO17G00470.1|Name=NO17G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=837bp
ATGTTGGCCGTTTCCACCTCCTCTATTTCGTCTTCCTTTCTCCTCCCGTC
TCCTGCTTCACCTCCTTGCGGCATTAGAATACCTGCTCCGCTTCCTGCCT
TCCTGGCCCCGTGGTCCTCCCTTTCCACCGCTACCGGCATCAAAACTCCC
CGCGCCCTTGTGCAGAAGGAGGATACTCTTCTGGAAGCTATTCAGGGTCT
TGACCGACGAGAGATCCAGAATAGCGCAGAGGCACGCGCACGCGTCAAGA
GCCTTATCGACGACCTGGAAGCTTCAAAGGGAATAAAGAAAGCAACGGCC
ACCAAGGAAATCAATGGCAAATGGCGCTTGCTCTACACCTCCAGCGATGG
CACCGCCTCCCCCATTCAAAACACCTTTGTGGGCAGCAAGGCCTTCGCCA
TCTACCAGGAAATCGACATCGCCCCCCCCTTGTCCTCTTCCTCCTCCCCT
TCCTCCCCCGCCACAGTCACCAACATCGTGGACTTCGGTGACTCTATTGG
TGCTCTTAACGTACAAGCATTGGCCAGCACACTCTTTCGACCCATCCCTG
GCTTTGAGCCAAGGAAAGGGGACGGGAAATTCTTCGGCATCAACGTGCTG
GGGGTGAGCAAGACGGAAGTGCCCCGCGACGGAGACCCAGCAGACCGCAT
CGACTTCAAGTTTGACAACGCTGGTTTTGACCTAGGCTTCCTCCCCTTCC
GTGTGCCCTATCCAGTGCCCTTCCGTCTGCTAGGGGATGAAGTGAAAGGA
TGGTTGGAGGTGACGTATCTCTCGCCGCGGCTGAGGTTGTCGCGGGGGAA
CAAGGGCACGATATTTGTACTGCAAAAGGTGGAGTGA
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protein sequence of NO17G00470.1

>NO17G00470.1-protein ID=NO17G00470.1-protein|Name=NO17G00470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MLAVSTSSISSSFLLPSPASPPCGIRIPAPLPAFLAPWSSLSTATGIKTP
RALVQKEDTLLEAIQGLDRREIQNSAEARARVKSLIDDLEASKGIKKATA
TKEINGKWRLLYTSSDGTASPIQNTFVGSKAFAIYQEIDIAPPLSSSSSP
SSPATVTNIVDFGDSIGALNVQALASTLFRPIPGFEPRKGDGKFFGINVL
GVSKTEVPRDGDPADRIDFKFDNAGFDLGFLPFRVPYPVPFRLLGDEVKG
WLEVTYLSPRLRLSRGNKGTIFVLQKVE*
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mRNA from alignment at chr17:173794..174764-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G00470.1 ID=NO17G00470.1|Name=NO17G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=971bp|location=Sequence derived from alignment at chr17:173794..174764- (Nannochloropsis oceanica)
ATGTTGGCCGTTTCCACCTCCTCTATTTCGTCTTCCTTTCTCCTCCCGTC
TCCTGCTTCACCTCCTTGCGGCATTAGAATACCTGCTCCGCTTCCTGCCT
TCCTGGCCCCGTGGTCCTCCCTTTCCACCGCTACCGGCATCAAAACTCCC
CGCGCCCTTGTGCAGAAGGAGGATACTCTTCTGGAAGCTATTCAGGGTCT
TGACCGACGAGAGATCCAGAATAGCGCAGAGGCACGCGCACGCGTCAAGA
GCCTTATCGACGACCTGGAAGCTTCAAAGGGAATAAAGAAAGCAACGGCC
ACCAAGGAAATCAATGGCAAATGGCGCTTGCTCTACACCTCCAGCGATGG
CACCGCCTCCCCCATTCAAAACACCTTTGTGGGCAGCAAGGCCTTCGCCA
TCTACCAGGAAATCGACATCGCCCCCCCCTTGTCCTCTTCCTCCTCCCCT
TCCTCCCCCGCCACAGTCACCAACATCGTGGACTTCGGTGACTCTATTGG
TGCTCTTAACGTACAAGCATTGGCCAGCACACTCTTTCGACCCATCCCTG
GCTTTGAGCCAAGGAAAGGGGACGGGAAATTCTTCGGCATCAACGTGCTG
GGGGTGAGCAAGACGGAAGTGCCCCGCGACGGAGACCCAGCAGACCGTGA
GTTTAAGGAAGGGAAGGAGGGAAGGAGGGAAGGAGGGAAAGAGGGAAGGA
GGGTTCTGTATGCTGTTCGATATATCTTTGCACCCATTAATTCACATATT
CCTCTCTTTTCCGCACCAACCTTTCCTCAGGCATCGACTTCAAGTTTGAC
AACGCTGGTTTTGACCTAGGCTTCCTCCCCTTCCGTGTGCCCTATCCAGT
GCCCTTCCGTCTGCTAGGGGATGAAGTGAAAGGATGGTTGGAGGTGACGT
ATCTCTCGCCGCGGCTGAGGTTGTCGCGGGGGAACAAGGGCACGATATTT
GTACTGCAAAAGGTGGAGTGA
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Coding sequence (CDS) from alignment at chr17:173794..174764-

>NO17G00470.1 ID=NO17G00470.1|Name=NO17G00470.1|organism=Nannochloropsis oceanica|type=CDS|length=837bp|location=Sequence derived from alignment at chr17:173794..174764- (Nannochloropsis oceanica)
ATGTTGGCCGTTTCCACCTCCTCTATTTCGTCTTCCTTTCTCCTCCCGTC
TCCTGCTTCACCTCCTTGCGGCATTAGAATACCTGCTCCGCTTCCTGCCT
TCCTGGCCCCGTGGTCCTCCCTTTCCACCGCTACCGGCATCAAAACTCCC
CGCGCCCTTGTGCAGAAGGAGGATACTCTTCTGGAAGCTATTCAGGGTCT
TGACCGACGAGAGATCCAGAATAGCGCAGAGGCACGCGCACGCGTCAAGA
GCCTTATCGACGACCTGGAAGCTTCAAAGGGAATAAAGAAAGCAACGGCC
ACCAAGGAAATCAATGGCAAATGGCGCTTGCTCTACACCTCCAGCGATGG
CACCGCCTCCCCCATTCAAAACACCTTTGTGGGCAGCAAGGCCTTCGCCA
TCTACCAGGAAATCGACATCGCCCCCCCCTTGTCCTCTTCCTCCTCCCCT
TCCTCCCCCGCCACAGTCACCAACATCGTGGACTTCGGTGACTCTATTGG
TGCTCTTAACGTACAAGCATTGGCCAGCACACTCTTTCGACCCATCCCTG
GCTTTGAGCCAAGGAAAGGGGACGGGAAATTCTTCGGCATCAACGTGCTG
GGGGTGAGCAAGACGGAAGTGCCCCGCGACGGAGACCCAGCAGACCGCAT
CGACTTCAAGTTTGACAACGCTGGTTTTGACCTAGGCTTCCTCCCCTTCC
GTGTGCCCTATCCAGTGCCCTTCCGTCTGCTAGGGGATGAAGTGAAAGGA
TGGTTGGAGGTGACGTATCTCTCGCCGCGGCTGAGGTTGTCGCGGGGGAA
CAAGGGCACGATATTTGTACTGCAAAAGGTGGAGTGA
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Synonyms
Publications