NO17G00420.1, NO17G00420.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO17G00420.1
Unique Name	NO17G00420.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1230
Alignment location	chr17:155527..158100 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr17	genome	chr17:155527..158100 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO17G00420.1 vs.
Match: XP_005852646.1 (dephospho-CoA kinase, partial [Nannochloropsis gaditana CCMP526]; EKU23186.1 dephospho-CoA kinase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 201.1 bits (510), Expect = 6.800e-48
Identity = 97/122 (79.51%), Postives = 107/122 (87.70%), Query Frame = 0

Query:  193 VAKLCQTHQGAAVIDADVLGHRSYAKGTRCFRLLVKTFGEGIVGEDGNINRRALGSIVFSSPTERKRLEGIVWPEIRRLMEQDIQALGETGIQTAVVEAAVMLEAGWEDAMDEVWVVVVDPE 315
            V +LCQ   G +V+DADVLGHRSY+KGT C+R L+KTFGE IVGEDG INRRALG IVFSSP ER RLEGIVWPEIRRLME+D++ALGETGI  AVVEAAVMLEAGWEDAMDEVWVV V+PE
Sbjct:    2 VTRLCQGRYGVSVLDADVLGHRSYSKGTPCYRQLLKTFGEEIVGEDGQINRRALGRIVFSSPQERNRLEGIVWPEIRRLMEEDLRALGETGIHAAVVEAAVMLEAGWEDAMDEVWVVAVEPE 123

The following BLAST results are available for this feature:

BLAST of NO17G00420.1 vs.

BLAST of NO17G00420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005852646.1	6.800e-48	79.51	dephospho-CoA kinase, partial [Nannochloropsis gad...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO17G00420	NO17G00420	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO17G00420.1	NO17G00420.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO17G00420.1.cds1	NO17G00420.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G00420.1.cds2	NO17G00420.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G00420.1.cds3	NO17G00420.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G00420.1.cds4	NO17G00420.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G00420.1.cds5	NO17G00420.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G00420.1.cds6	NO17G00420.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G00420.1.cds7	NO17G00420.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G00420.1.cds8	NO17G00420.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr17:155527..158100-
coding sequence from alignment at chr17:155527..158100-

mRNA sequence

>NO17G00420.1 ID=NO17G00420.1|Name=NO17G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1230bp
ATGTACCCTTTCCGGTGTCATTGGCGCTATCAGGCACTATTACTGCGCTT
GTATACGACGGGTTTATACTTAACCACCTGGTCTTCCACTGAAAGATTGT
GGAATCTTGGTTCACTACCGCCGATGATGGTGGCTCGCTTTTTGCTACAT
ACAGTGCTAGGACTTTACAGTGGTTTGACTTTTCCTCCCCTCCTCAACAC
CAATCAATGGACAGGCAGCTTGCCGCATCGCCCTCTTCTCCTGGTGGTCG
TCGTCAACACCATCCTTTCAGCAAGCAGCAGCATCTGCAGCAGCAGCAGT
AGGAAGAGGAGCCCGTTCTGCGGCACCATTCCGCACACACGGGCAACCTC
GGCCCCTCTGCGGGTCGTGCGATTTGGCACCCAGCACCATCATCACGACT
CCAGGGGCGCGTCAGACTACCGAGGCATGCCTCTTGGCAACCCCAGCAGC
ACCAGCGGTGGCAGTGGTGGTGGTGGTGGAGGCAGCAGCATGGGCAGCGG
TGGTGGCGCAGGAGCCGGAAGGCGGCGGCCGTTGGTTATTGGCATAACGG
GTGGAATCGCCTCGGGCAAAAGCGCCGTGGCCAAGCTGTGTCAGACGCAC
CAGGGCGCGGCCGTCATCGACGCGGACGTGTTAGGACACCGGAGCTACGC
GAAAGGCACGAGATGCTTCCGCCTACTCGTCAAGACCTTTGGAGAAGGCA
TCGTGGGGGAGGATGGGAATATCAACAGACGCGCCTTAGGCAGCATTGTC
TTTTCCTCTCCCACGGAACGGAAACGGCTGGAGGGAATCGTTTGGCCGGA
GATTCGGAGACTCATGGAGCAGGATATTCAGGCCTTGGGGGAGACCGGCA
TCCAGACGGCGGTGGTTGAGGCAGCAGTAATGCTGGAGGCGGGTTGGGAG
GACGCGATGGACGAGGTGTGGGTGGTGGTTGTGGACCCGGAGGTAGCCAG
AACTCGCCTCATGGCTCGGAATCACCTCTCAGCCGAAGACGCCAGCAGGC
GGATTCAGGCGCAGATGACAAACGAAGAGCGGATGGAGAAAGCCGACCGC
GTGATATACAATAATCGAACGGCGGCAGAGCTCGAGAAAGAGGTGGAGCT
GGCATGGACGGAGCGTGGGACGCTCCGTCGTCGCAAGTCCGCCCTTCGAG
CCCGTTGGAGGATCTTGGCGACAGCTGTCGGTTTTGCCCTGCTTGCTTCT
CTTGTGGGAGTAAGGATGAGGAAGGGGTAG

protein sequence of NO17G00420.1

>NO17G00420.1-protein ID=NO17G00420.1-protein|Name=NO17G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=410bp
MYPFRCHWRYQALLLRLYTTGLYLTTWSSTERLWNLGSLPPMMVARFLLH
TVLGLYSGLTFPPLLNTNQWTGSLPHRPLLLVVVVNTILSASSSICSSSS
RKRSPFCGTIPHTRATSAPLRVVRFGTQHHHHDSRGASDYRGMPLGNPSS
TSGGSGGGGGGSSMGSGGGAGAGRRRPLVIGITGGIASGKSAVAKLCQTH
QGAAVIDADVLGHRSYAKGTRCFRLLVKTFGEGIVGEDGNINRRALGSIV
FSSPTERKRLEGIVWPEIRRLMEQDIQALGETGIQTAVVEAAVMLEAGWE
DAMDEVWVVVVDPEVARTRLMARNHLSAEDASRRIQAQMTNEERMEKADR
VIYNNRTAAELEKEVELAWTERGTLRRRKSALRARWRILATAVGFALLAS
LVGVRMRKG*

mRNA from alignment at chr17:155527..158100-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO17G00420.1 ID=NO17G00420.1|Name=NO17G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2574bp|location=Sequence derived from alignment at chr17:155527..158100- (Nannochloropsis oceanica)
ATGTACCCTTTCCGGTGTCATTGGCGCTATCAGGCACTATTACTGCGCTT
GTATACGACGGGTTTATACTTAACCACCTGGTCTTCCACTGAAAGATTGT
GGAATCTTGGTTCACTACCGCCGATGATGGTGGCTCGCTTTTTGCTACAT
ACAGTGCTAGGACTTTACAGTGGTTTGACTTTTCCTCCCCTCCTCAACAC
CAATCAATGGACAGGCAGCTTGCCGCATCGCCCTCTTCTCCTGGTGGTCG
TCGTCAACACCATCCTTTCAGCAAGCAGCAGCATCTGCAGCAGCAGCAGT
AGGAAGTAGCGGCAGCACGATTTATCCCACTCCACGCCTCGTCGCCCTCC
CCATCCTCCTTTCCCTTTTCGTTCTCCTCGTCTTCCCAATCCCCTCCCTC
TCCTTCCTCCTCCCCTCCTCTTCCTCCCTCCCCTCGACAAGGAGGAGCCC
GTTCTGCGGCACCATTCCGCACACACGGGCAACCTCGGCCCCTCTGCGGG
TCGTGCGATTTGGCACCCAGCACCATCATCACGACTCCAGGGGCGCGTCA
GGTACATGGGCGTGTCCGCCTAGCCTCTCCCTCCCTCCCTCCCTCCTCTC
ATACGGTAGTGTGGAAGGCCTCGTGGACGTCCTCACCGATCCATTTTTCT
CTCCTCCCTCCTTCCCTCCTCCTCCCTTCATTAGACTACCGAGGCATGCC
TCTTGGCAACCCCAGCAGCACCAGCGGTGGCAGTGGTGGTGGTGGTGGAG
GCAGCAGCATGGGCAGCGGTGGTGGCGCAGGAGCCGGAAGGCGGCGGCCG
TTGGTTATTGGCATAACGGGTGGAAGTACGTTTCAGCGGGTGGGAAGAGG
AGGGGAGGGAATGGGAAAGGGTGCGCGAGCAACTCGTGTTATTTTTGGTG
TGTGGGTGATTCTTTTCCTTTTCTTTTTTTCTTTTTCTTCTTTCTTTCCT
TTTCGTTTCGTTTAGTTGTGTGTTTCCATTCATTTCTTCTTCCTTTCTGT
TTGTTTCCTTCCGTCTTCTTCGGTGCGTGGATGGAGGGATGGAGTCACTT
ACTTGCCATCGCCACGCTGTGTGAAGGATATCAAGGCCGAGGGAGGGAGG
GAGGGACGTGGGTAGATGTCCTCCAGGGGCTGCGTCGACGAAAAGCTCCA
CGACATGTCAGAGATATCGAGGCGTTGCTGTCATCGACGCAGCCCCTGGA
AGACACCCACCCATTTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTAG
TCGCCTCGGGCAAAAGCGCCGTGGCCAAGCTGTGTCAGACGCACCAGGGC
GCGGCCGTCATCGACGCGGACGTGTTAGGACACCGGAGCTACGCGAAAGG
CACGAGATGCTTCCGCCTACTCGTCAAGACCTTTGGAGAAGGCATCGTGG
GGGAGGATGGGAATATCAACAGGTACGGCCTCCCTCCCTCCCTCTCTCCC
TCAGGCATGCCAGCAAGATTGCATTGTCTTCTCCTCTCCCACGGAGCGGA
AACGGCTGGAGGGAACACGTGCGATCCACTCATCCTCCCTCCTTCCCTCC
CTCACCTTTTCCCTCCCACAGACGCGCCTTAGGCAGCATTGTCTTTTCCT
CTCCCACGGAACGGAAACGGCTGGAGGGAATCGTTTGGCCGGAGATTCGG
AGACTCATGGAGCAGGATATTCAGGCCTTGGGGGAGGTACCGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGTGAGGGAG
GACGAACAGTGCTGTCGACTGCGTAATTAACCTTTTCTCAGGCTTTCCTA
TTTGTATCAGTTACATTGACCTCGCTATCCCCCCTCCCTCCCTCCCTCCC
TCCCTCCCCCCTTTCCCCCTCCCTCCCAACCCCCTTTCCCCCCTCCCTCG
TCAAGACCGGCATCCAGACGGCGGTGGTTGAGGCAGCAGTAATGCTGGAG
GCGGGTTGGGAGGACGCGATGGACGAGGTGTGGGTGGTGGTTGTGGACCC
GGAGGTAGCCAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAAGGGGAAAGAAAGGTTAATCAACAACAGGTACA
AAGATAATGGACACGCACCCCCCTCCCCTCCCTCCCTCCCTCCTTCCCTC
AGAACTCGCCTCATGGCTCGGAATCACCTCTCAGCCGAAGACGCCAGCAG
GCGGATTCAGGCGCAGATGACAAACGAAGAGCGGATGGAGAAAGCCGACC
GCGTGATATACAATAATCGAACGGCGGCAGAGCTCGAGAAAGAGGTAGGG
ACGTGCCCGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTGGCCCCTT
GCCTACCTTCCAGGGATGAGGCGACGAATCCAGACACTGTTCCTTCAACT
CCCTCCCCCCCGCCCTTCCTCCCTCCCTCCCTTCAGGTGGAGCTGGCATG
GACGGAGCGTGGGACGCTCCGTCGTCGCAAGTCCGCCCTTCGAGCCCGTT
GGAGGATCTTGGCGACAGCTGTCGGTTTTGCCCTGCTTGCTTCTCTTGTG
GGAGTAAGGATGAGGAAGGGGTAG

Coding sequence (CDS) from alignment at chr17:155527..158100-

>NO17G00420.1 ID=NO17G00420.1|Name=NO17G00420.1|organism=Nannochloropsis oceanica|type=CDS|length=1230bp|location=Sequence derived from alignment at chr17:155527..158100- (Nannochloropsis oceanica)
ATGTACCCTTTCCGGTGTCATTGGCGCTATCAGGCACTATTACTGCGCTT
GTATACGACGGGTTTATACTTAACCACCTGGTCTTCCACTGAAAGATTGT
GGAATCTTGGTTCACTACCGCCGATGATGGTGGCTCGCTTTTTGCTACAT
ACAGTGCTAGGACTTTACAGTGGTTTGACTTTTCCTCCCCTCCTCAACAC
CAATCAATGGACAGGCAGCTTGCCGCATCGCCCTCTTCTCCTGGTGGTCG
TCGTCAACACCATCCTTTCAGCAAGCAGCAGCATCTGCAGCAGCAGCAGT
AGGAAGAGGAGCCCGTTCTGCGGCACCATTCCGCACACACGGGCAACCTC
GGCCCCTCTGCGGGTCGTGCGATTTGGCACCCAGCACCATCATCACGACT
CCAGGGGCGCGTCAGACTACCGAGGCATGCCTCTTGGCAACCCCAGCAGC
ACCAGCGGTGGCAGTGGTGGTGGTGGTGGAGGCAGCAGCATGGGCAGCGG
TGGTGGCGCAGGAGCCGGAAGGCGGCGGCCGTTGGTTATTGGCATAACGG
GTGGAATCGCCTCGGGCAAAAGCGCCGTGGCCAAGCTGTGTCAGACGCAC
CAGGGCGCGGCCGTCATCGACGCGGACGTGTTAGGACACCGGAGCTACGC
GAAAGGCACGAGATGCTTCCGCCTACTCGTCAAGACCTTTGGAGAAGGCA
TCGTGGGGGAGGATGGGAATATCAACAGACGCGCCTTAGGCAGCATTGTC
TTTTCCTCTCCCACGGAACGGAAACGGCTGGAGGGAATCGTTTGGCCGGA
GATTCGGAGACTCATGGAGCAGGATATTCAGGCCTTGGGGGAGACCGGCA
TCCAGACGGCGGTGGTTGAGGCAGCAGTAATGCTGGAGGCGGGTTGGGAG
GACGCGATGGACGAGGTGTGGGTGGTGGTTGTGGACCCGGAGGTAGCCAG
AACTCGCCTCATGGCTCGGAATCACCTCTCAGCCGAAGACGCCAGCAGGC
GGATTCAGGCGCAGATGACAAACGAAGAGCGGATGGAGAAAGCCGACCGC
GTGATATACAATAATCGAACGGCGGCAGAGCTCGAGAAAGAGGTGGAGCT
GGCATGGACGGAGCGTGGGACGCTCCGTCGTCGCAAGTCCGCCCTTCGAG
CCCGTTGGAGGATCTTGGCGACAGCTGTCGGTTTTGCCCTGCTTGCTTCT
CTTGTGGGAGTAAGGATGAGGAAGGGGTAG

Synonyms

Publications