NO16G03050.1, NO16G03050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G03050.1
Unique NameNO16G03050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1883
Alignment locationchr16:902197..904079 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:902197..904079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO16G03050.1 vs.
Match: EWM26413.1 (hypothetical protein Naga_101468g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 412.9 bits (1060), Expect = 1.700e-111
Identity = 278/494 (56.28%), Postives = 340/494 (68.83%), Query Frame = 0 
Query:   10 LAVLGGAWAPVAVAQDCPRLILGAKARPNAKHRILAGQQKAKIIVKVRSKEAVQGVNFKMELPAGLSVVKPKARPSLIVSPAQTIQNPDGTTAIYWTDFDFKRS--SKRVFKAMVIADDCAPEMLNVTGLAYLVNATDLSTYCALPLAEPVVLRVRYPGDKLGKHASSMPVTCAPTLAPSVNPATPFQLFGEGQRCLQAGQLAPFGQGRRLSEFYHGKGLDSHRDIDGEHRQLAPVEINTPTECFEYCSINGNEPTPFFFNWNTATNQCFCCGGVCDLILDPDFKAFKVVEAGTRGPSVSPSLSPSASPSSSPSASPSRTPTMAPKPTLPPTATPTATPTASPTTTPTMGPKPTLPPTATPTTTPTATPTATPTATPTATPTATPTATPTATPTATPTATPTATPTATPTATPTATPTATPTATPTATPTATPSATPTATPTATPTATPTATPTATPTATPTATPTATPTATPTATPTATPTATPTATPTATPT 502
            L VLG A+AP AVAQ+CP L L  KARP  K  +LAG+  A++ V +RSKE V  +NFK+ LP GLS+V+  +RP   + P + ++NPDG+TA++W  FDF ++  +KRVFKA    D CAPE L VTGLAYLVNATDL+TYCA PLA P VL VRY   K          TCAPT AP+VNPA PF LFG+GQRCL+A +LAPF   R LS      G +    I  EHR L    I TP++CF YCS+NG E  PFFFNWNT T+QCFCCG VC LI+DP F A++V    T  P+   + +P+ +P++S              PTL PTA+PTA PTA+PT  PT        PTA PT +PTA PT +PTA PTA+PTA PTA+PTA PT +PTA PTA+PTA PTA+PT  PTA+PTA PTA+PT  P+A+PTA PTA+PTA PTA+PTA PTA+PTA PTA+PTA PTA+PTA PT +PTA PT +PT
Sbjct:   45 LVVLGIAYAPTAVAQECPTLTLTGKARPGFKRGVLAGKGHARVTVTLRSKEVVDDLNFKLLLPTGLSLVRTSSRPKARIHP-EVVENPDGSTAVFWLGFDFAKAKGNKRVFKAKAKVDACAPETLTVTGLAYLVNATDLTTYCATPLASPAVLNVRYSKAK-------KVATCAPTPAPTVNPAQPFVLFGDGQRCLEASRLAPFDDRRLLSS---SNGREYAHSIHREHRHLQ--SIATPSDCFTYCSLNGGESVPFFFNWNTVTSQCFCCGNVCTLIVDPAFSAYEVTMDATSAPTAVSTATPTPAPTAS--------------PTLTPTASPTAVPTATPTAAPTAS------PTAAPTKSPTAAPTTSPTAAPTASPTAAPTASPTAAPTTSPTAAPTASPTAAPTASPTTAPTASPTAAPTASPTTAPTASPTAAPTASPTAAPTASPTAAPTASPTAAPTASPTAAPTASPTAAPTTSPTAAPTTSPT 505
The following BLAST results are available for this feature:
BLAST of NO16G03050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26413.11.700e-11156.28hypothetical protein Naga_101468g1, partial [Nanno... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G03050NO16G03050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G03050.1NO16G03050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G03050.1.cds1NO16G03050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G03050.1 ID=NO16G03050.1|Name=NO16G03050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1883bp
AGATACACGCCGTCTCATTAGTCTACATACAATCAGAGACCATGTACCTG
CCCCTTATCTTCCCCGTGCTTGCTGTTCTGGGCGGCGCCTGGGCGCCGGT
TGCCGTTGCCCAGGACTGTCCACGTCTGATTCTGGGCGCCAAGGCGCGAC
CTAATGCAAAGCATAGGATCCTGGCAGGCCAACAAAAAGCCAAGATCATC
GTTAAGGTTCGAAGCAAAGAGGCTGTACAAGGCGTCAATTTCAAGATGGA
GCTGCCGGCTGGCTTGTCTGTGGTCAAGCCCAAGGCCCGCCCGTCCCTCA
TTGTCTCCCCCGCGCAGACCATCCAGAATCCAGATGGGACAACGGCAATC
TACTGGACAGACTTTGACTTCAAAAGAAGCTCCAAGCGCGTGTTTAAGGC
CATGGTGATCGCTGATGACTGTGCCCCTGAGATGCTGAATGTCACAGGCC
TGGCGTACCTGGTCAACGCCACGGACCTGTCCACTTACTGTGCTTTGCCA
CTGGCCGAGCCCGTAGTCTTGCGTGTGCGATATCCTGGCGACAAGTTGGG
CAAGCACGCTTCCTCGATGCCTGTCACGTGCGCACCGACTCTGGCCCCGA
GCGTTAACCCCGCAACACCCTTCCAACTTTTTGGTGAGGGGCAGCGATGC
TTGCAGGCAGGACAACTGGCGCCCTTTGGTCAAGGTCGCCGTTTGTCGGA
ATTTTATCACGGGAAGGGACTGGACTCGCACAGGGATATTGATGGTGAGC
ATCGGCAGCTGGCGCCTGTGGAGATTAACACTCCGACTGAGTGCTTCGAA
TACTGCTCCATCAATGGGAATGAGCCAACTCCGTTTTTCTTCAACTGGAA
CACGGCAACCAATCAGTGCTTCTGCTGCGGTGGAGTATGCGACTTGATTC
TTGACCCCGATTTTAAAGCTTTTAAGGTGGTCGAAGCTGGTACCAGGGGC
CCCTCTGTGTCTCCTTCCCTGAGCCCGTCGGCATCGCCCTCGAGCAGCCC
TTCCGCTTCTCCCTCGCGTACTCCGACGATGGCACCTAAGCCTACATTGC
CTCCGACGGCGACACCGACGGCAACTCCGACCGCTTCGCCCACAACAACT
CCGACGATGGGACCTAAACCTACTTTGCCTCCGACGGCAACGCCCACAAC
AACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACGGCAA
CTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACGGCAACT
CCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACGGCCACACC
GACGGCCACACCGACTGCCACACCGACTGCAACTCCGACGGCAACTCCGA
CGGCCACTCCATCGGCCACACCGACGGCCACACCGACGGCAACTCCGACG
GCCACACCGACTGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGC
CACACCGACGGCCACACCGACGGCCACACCGACTGCAACTCCGACGGCCA
CACCGACTGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACA
CCGACGGCCACACCGACGGCCACACCGACTGCAACTCCGACGGCCACACC
GACGGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGA
CGGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACT
GCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACGGC
AACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACGGCAA
CTCCGACGGCCACACCGACTGCGACTCCGACGGCCACACCGACTGCAAGT
CCGACCCCCTTCCAGACTGGGCCAGACCGATAA
back to top

protein sequence of NO16G03050.1

>NO16G03050.1-protein ID=NO16G03050.1-protein|Name=NO16G03050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=614bp
MYLPLIFPVLAVLGGAWAPVAVAQDCPRLILGAKARPNAKHRILAGQQKA
KIIVKVRSKEAVQGVNFKMELPAGLSVVKPKARPSLIVSPAQTIQNPDGT
TAIYWTDFDFKRSSKRVFKAMVIADDCAPEMLNVTGLAYLVNATDLSTYC
ALPLAEPVVLRVRYPGDKLGKHASSMPVTCAPTLAPSVNPATPFQLFGEG
QRCLQAGQLAPFGQGRRLSEFYHGKGLDSHRDIDGEHRQLAPVEINTPTE
CFEYCSINGNEPTPFFFNWNTATNQCFCCGGVCDLILDPDFKAFKVVEAG
TRGPSVSPSLSPSASPSSSPSASPSRTPTMAPKPTLPPTATPTATPTASP
TTTPTMGPKPTLPPTATPTTTPTATPTATPTATPTATPTATPTATPTATP
TATPTATPTATPTATPTATPTATPTATPTATPTATPTATPSATPTATPTA
TPTATPTATPTATPTATPTATPTATPTATPTATPTATPTATPTATPTATP
TATPTATPTATPTATPTATPTATPTATPTATPTATPTATPTATPTATPTA
TPTATPTATPTATPTATPTATPTATPTATPTATPTATPTATPTATPTATP
TASPTPFQTGPDR*
back to top

mRNA from alignment at chr16:902197..904079+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G03050.1 ID=NO16G03050.1|Name=NO16G03050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1883bp|location=Sequence derived from alignment at chr16:902197..904079+ (Nannochloropsis oceanica)
AGATACACGCCGTCTCATTAGTCTACATACAATCAGAGACCATGTACCTG
CCCCTTATCTTCCCCGTGCTTGCTGTTCTGGGCGGCGCCTGGGCGCCGGT
TGCCGTTGCCCAGGACTGTCCACGTCTGATTCTGGGCGCCAAGGCGCGAC
CTAATGCAAAGCATAGGATCCTGGCAGGCCAACAAAAAGCCAAGATCATC
GTTAAGGTTCGAAGCAAAGAGGCTGTACAAGGCGTCAATTTCAAGATGGA
GCTGCCGGCTGGCTTGTCTGTGGTCAAGCCCAAGGCCCGCCCGTCCCTCA
TTGTCTCCCCCGCGCAGACCATCCAGAATCCAGATGGGACAACGGCAATC
TACTGGACAGACTTTGACTTCAAAAGAAGCTCCAAGCGCGTGTTTAAGGC
CATGGTGATCGCTGATGACTGTGCCCCTGAGATGCTGAATGTCACAGGCC
TGGCGTACCTGGTCAACGCCACGGACCTGTCCACTTACTGTGCTTTGCCA
CTGGCCGAGCCCGTAGTCTTGCGTGTGCGATATCCTGGCGACAAGTTGGG
CAAGCACGCTTCCTCGATGCCTGTCACGTGCGCACCGACTCTGGCCCCGA
GCGTTAACCCCGCAACACCCTTCCAACTTTTTGGTGAGGGGCAGCGATGC
TTGCAGGCAGGACAACTGGCGCCCTTTGGTCAAGGTCGCCGTTTGTCGGA
ATTTTATCACGGGAAGGGACTGGACTCGCACAGGGATATTGATGGTGAGC
ATCGGCAGCTGGCGCCTGTGGAGATTAACACTCCGACTGAGTGCTTCGAA
TACTGCTCCATCAATGGGAATGAGCCAACTCCGTTTTTCTTCAACTGGAA
CACGGCAACCAATCAGTGCTTCTGCTGCGGTGGAGTATGCGACTTGATTC
TTGACCCCGATTTTAAAGCTTTTAAGGTGGTCGAAGCTGGTACCAGGGGC
CCCTCTGTGTCTCCTTCCCTGAGCCCGTCGGCATCGCCCTCGAGCAGCCC
TTCCGCTTCTCCCTCGCGTACTCCGACGATGGCACCTAAGCCTACATTGC
CTCCGACGGCGACACCGACGGCAACTCCGACCGCTTCGCCCACAACAACT
CCGACGATGGGACCTAAACCTACTTTGCCTCCGACGGCAACGCCCACAAC
AACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACGGCAA
CTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACGGCAACT
CCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACGGCCACACC
GACGGCCACACCGACTGCCACACCGACTGCAACTCCGACGGCAACTCCGA
CGGCCACTCCATCGGCCACACCGACGGCCACACCGACGGCAACTCCGACG
GCCACACCGACTGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGC
CACACCGACGGCCACACCGACGGCCACACCGACTGCAACTCCGACGGCCA
CACCGACTGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACA
CCGACGGCCACACCGACGGCCACACCGACTGCAACTCCGACGGCCACACC
GACGGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGA
CGGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACT
GCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACGGC
AACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACGGCAA
CTCCGACGGCCACACCGACTGCGACTCCGACGGCCACACCGACTGCAAGT
CCGACCCCCTTCCAGACTGGGCCAGACCGATAA
back to top

Coding sequence (CDS) from alignment at chr16:902197..904079+

>NO16G03050.1 ID=NO16G03050.1|Name=NO16G03050.1|organism=Nannochloropsis oceanica|type=CDS|length=1842bp|location=Sequence derived from alignment at chr16:902197..904079+ (Nannochloropsis oceanica)
ATGTACCTGCCCCTTATCTTCCCCGTGCTTGCTGTTCTGGGCGGCGCCTG
GGCGCCGGTTGCCGTTGCCCAGGACTGTCCACGTCTGATTCTGGGCGCCA
AGGCGCGACCTAATGCAAAGCATAGGATCCTGGCAGGCCAACAAAAAGCC
AAGATCATCGTTAAGGTTCGAAGCAAAGAGGCTGTACAAGGCGTCAATTT
CAAGATGGAGCTGCCGGCTGGCTTGTCTGTGGTCAAGCCCAAGGCCCGCC
CGTCCCTCATTGTCTCCCCCGCGCAGACCATCCAGAATCCAGATGGGACA
ACGGCAATCTACTGGACAGACTTTGACTTCAAAAGAAGCTCCAAGCGCGT
GTTTAAGGCCATGGTGATCGCTGATGACTGTGCCCCTGAGATGCTGAATG
TCACAGGCCTGGCGTACCTGGTCAACGCCACGGACCTGTCCACTTACTGT
GCTTTGCCACTGGCCGAGCCCGTAGTCTTGCGTGTGCGATATCCTGGCGA
CAAGTTGGGCAAGCACGCTTCCTCGATGCCTGTCACGTGCGCACCGACTC
TGGCCCCGAGCGTTAACCCCGCAACACCCTTCCAACTTTTTGGTGAGGGG
CAGCGATGCTTGCAGGCAGGACAACTGGCGCCCTTTGGTCAAGGTCGCCG
TTTGTCGGAATTTTATCACGGGAAGGGACTGGACTCGCACAGGGATATTG
ATGGTGAGCATCGGCAGCTGGCGCCTGTGGAGATTAACACTCCGACTGAG
TGCTTCGAATACTGCTCCATCAATGGGAATGAGCCAACTCCGTTTTTCTT
CAACTGGAACACGGCAACCAATCAGTGCTTCTGCTGCGGTGGAGTATGCG
ACTTGATTCTTGACCCCGATTTTAAAGCTTTTAAGGTGGTCGAAGCTGGT
ACCAGGGGCCCCTCTGTGTCTCCTTCCCTGAGCCCGTCGGCATCGCCCTC
GAGCAGCCCTTCCGCTTCTCCCTCGCGTACTCCGACGATGGCACCTAAGC
CTACATTGCCTCCGACGGCGACACCGACGGCAACTCCGACCGCTTCGCCC
ACAACAACTCCGACGATGGGACCTAAACCTACTTTGCCTCCGACGGCAAC
GCCCACAACAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACAC
CGACGGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCG
ACGGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGAC
GGCCACACCGACGGCCACACCGACTGCCACACCGACTGCAACTCCGACGG
CAACTCCGACGGCCACTCCATCGGCCACACCGACGGCCACACCGACGGCA
ACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACTGCAAC
TCCGACGGCCACACCGACGGCCACACCGACGGCCACACCGACTGCAACTC
CGACGGCCACACCGACTGCAACTCCGACGGCCACACCGACTGCAACTCCG
ACGGCCACACCGACGGCCACACCGACGGCCACACCGACTGCAACTCCGAC
GGCCACACCGACGGCAACTCCGACGGCCACACCGACTGCAACTCCGACGG
CCACACCGACGGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCC
ACACCGACTGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCAC
ACCGACGGCAACTCCGACGGCCACACCGACTGCAACTCCGACGGCCACAC
CGACGGCAACTCCGACGGCCACACCGACTGCGACTCCGACGGCCACACCG
ACTGCAAGTCCGACCCCCTTCCAGACTGGGCCAGACCGATAA
back to top
Synonyms
Publications