NO16G03040.1, NO16G03040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G03040.1
Unique NameNO16G03040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1035
Alignment locationchr16:896965..898631 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:896965..898631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G03040.1 vs.
Match: XP_005854883.1 (kinesin-like protein kif6 [Nannochloropsis gaditana CCMP526]; EKU21473.1 kinesin-like protein kif6 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 206.1 bits (523), Expect = 1.400e-49
Identity = 105/141 (74.47%), Postives = 124/141 (87.94%), Query Frame = 0 
Query:  117 GSKAGGETVRRSKLNLVDLAALERVHKTGGGVGGGRAGQMSKESKYINQSSFYLEEVILALHERRAHVPYRNSMMTSVLRDSLGENCKTIMVATVSMEKEHTKESLSTRRFAMRVGQIRSEARRNEDVDPYQVIKRLQTKL 258
            G + G ETVRRSKLNLVDLA  ERVHKTGG  G GR GQ  +E+KYINQS FYLE VILAL+E+R+HVPYRNS+MTSVLRDSLG NC+T+MVATV+ E+ HT+ESLST RFAMRVGQIR++A++NED+DP+QVIKRLQT+L
Sbjct:  299 GRRPGKETVRRSKLNLVDLAGSERVHKTGGN-GLGRGGQTLREAKYINQSLFYLENVILALYEKRSHVPYRNSLMTSVLRDSLGGNCRTVMVATVATERSHTEESLSTCRFAMRVGQIRNDAKQNEDLDPFQVIKRLQTQL 438
The following BLAST results are available for this feature:
BLAST of NO16G03040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854883.11.400e-4974.47kinesin-like protein kif6 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G03040NO16G03040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G03040.1NO16G03040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G03040.1.cds1NO16G03040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G03040.1.cds2NO16G03040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G03040.1.cds3NO16G03040.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G03040.1 ID=NO16G03040.1|Name=NO16G03040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1035bp
CCCATCCTCCCTCCCTTCCTCGTTTCCCTCAGAGGACAAGTGCACAGTAT
GCACACCCATCACCGCGACTCTTCCGGTCTCAGTCTCAATGTCCACATCT
TTGTCTTCCTCATTAAATGCATCTTCTTTGTCCGTCTCGGCTGATTCCCG
GAGGCTACCTGCAATCACTGCCACGAACGCCGAAAGCAGCACCCACGACC
ACAACCAGAGCAGCAGCAGCAGCGGTAGCAGCAGCAAAAATAACCGTATT
GAGGCCTCTCAGGACCATGTCTTCGCGCATTTGGGCTATGACGCCATCAT
TGACGCCTTGGATGGCTTCAATTCCACAATATTCGCCTACGGTCAGACAT
CCAGTGGCAAAACATTTACCATTACGGGAGGACCAGAACGGTATGTGGAC
AGAGGCCTGATTCCAAGGGCATTGCAGATGATCTTTGGGTCGAAAGCAGG
AGGAGAAACCGTGAGGCGGAGCAAACTCAATCTGGTGGATTTGGCAGCTT
TAGAACGCGTGCACAAGACAGGTGGTGGAGTTGGAGGAGGCCGAGCAGGC
CAAATGTCGAAGGAGTCCAAGTACATCAACCAGTCCTCGTTTTATTTGGA
GGAGGTAATCTTGGCCTTACACGAGCGACGGGCCCACGTGCCCTATCGAA
ACAGCATGATGACCTCAGTGCTTCGGGACAGCTTAGGAGAAAACTGTAAA
ACGATAATGGTTGCCACGGTCTCGATGGAAAAAGAACACACAAAGGAGTC
ATTATCAACCCGTCGATTCGCTATGCGCGTGGGTCAGATCCGGAGCGAGG
CGCGGAGGAACGAAGACGTGGATCCGTATCAGGTCATCAAACGGTTGCAG
ACCAAGTTGTGGCGGCCTAGGCGAAGGTAGCATCTTTTAGATGAGGGTCA
CTCGAGGAGGTGAATAAAGAGGCCGTGTGCGTGGCATGTCGAAAATCTGT
AAGGGCCAGAGGAAGGGTGGTAGAAGGCAATGGAAATAAAGGAAGTATAG
AGCAACAGCAAGAAGAGAGCATACGAGACCAGCAC
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protein sequence of NO16G03040.1

>NO16G03040.1-protein ID=NO16G03040.1-protein|Name=NO16G03040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MSTSLSSSLNASSLSVSADSRRLPAITATNAESSTHDHNQSSSSSGSSSK
NNRIEASQDHVFAHLGYDAIIDALDGFNSTIFAYGQTSSGKTFTITGGPE
RYVDRGLIPRALQMIFGSKAGGETVRRSKLNLVDLAALERVHKTGGGVGG
GRAGQMSKESKYINQSSFYLEEVILALHERRAHVPYRNSMMTSVLRDSLG
ENCKTIMVATVSMEKEHTKESLSTRRFAMRVGQIRSEARRNEDVDPYQVI
KRLQTKLWRPRRR*
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mRNA from alignment at chr16:896965..898631+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G03040.1 ID=NO16G03040.1|Name=NO16G03040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1667bp|location=Sequence derived from alignment at chr16:896965..898631+ (Nannochloropsis oceanica)
CCCATCCTCCCTCCCTTCCTCGTTTCCCTCAGAGGACAAGTGCACAGTAT
GCACACCCATCACCGCGACTCTTCCGGTCTCAGTCTCAATGTCCACATCT
TTGTCTTCCTCATTAAATGCATCTTCTTTGTCCGTCTCGGCTGATTCCCG
GAGGCTACCTGCAATCACTGCCACGAACGCCGAAAGCAGCACCCACGACC
ACAACCAGAGCAGCAGCAGCAGCGGTAGCAGCAGCAAAAATAACCGTAAT
GACAGTAGTTAAAGTAACATCACGGTTTTCGTGCGCCTGAAGCTCCGCAA
ACGCCCTTCTCCCTATATTAGCCTTGCTCCTCCTCCTACCCCTTCTATGC
TTTCCCCTACCCAGATAACAAGTACTACCCCTCCTCCGCCTCCGCTGTCG
ACGCGGTTGGCATTTGACGTTCCCCGTGATGTAGCTGCCACTGGCATTAC
AAATAATAATAATACTCACCACGGTTTTACCTTTACTGGGGTTCTAGGTA
TTGAGGCCTCTCAGGACCATGTCTTCGCGCATTTGGGCTATGACGCCATC
ATTGACGCCTTGGATGGCTTCAATTCCACAATATTCGCCTACGGTCAGAC
ATCCAGTGGCAAAACATTTACCATTACGGGAGGACCAGAACGGTATGTGG
ACAGAGGCCTGATTCCAAGGGCATTGCAGATGATCTTTGGTGAGATGCGG
CGCAGGGGCTCTGGTCAAGGGGACAAAGGGGCTGAAGGAGGCAGGGAGGC
GGTGCAGTTTCAGGTATATGTGTCATACTTGGAGGTCTACAGTGAAAAAG
GGTATGCTTTGTTGGCCGAGGGAGGGCGAGAGAGAGCAGAAGGAGGCGGA
TCCGAGCACGAAGGAGGACAAATAAAACTGCCGCGAGTGGCACTTCTGGA
AGATGAAGCAGGGAATTGTCATTTAAAGGGGCTGTCCATGCATGCCGTAA
GCACGGAAGAGGAAGCACTCAATCTCTTATTTGTGGGTGATACCAATCGC
GCCATTAGCGAGACTGCGATGAATGAAGCGTCGTTCCGCTCTCACTGCCT
CTTCACGCTGTCCTTTAAGGGTCGAAAGCAGGAGGAGAAACCGTGAGGCG
GAGCAAACTCAATCTGGTGGATTTGGCAGCTTTAGAACGCGTGCACAAGA
CAGGTGGTGGAGTTGGAGGAGGCCGAGCAGGCCAAATGTCGAAGGAGTCC
AAGTACATCAACCAGTCCTCGTTTTATTTGGAGGAGGTAATCTTGGCCTT
ACACGAGCGACGGGCCCACGTGCCCTATCGAAACAGCATGATGACCTCAG
TGCTTCGGGACAGCTTAGGAGAAAACTGTAAAACGATAATGGTTGCCACG
GTCTCGATGGAAAAAGAACACACAAAGGAGTCATTATCAACCCGTCGATT
CGCTATGCGCGTGGGTCAGATCCGGAGCGAGGCGCGGAGGAACGAAGACG
TGGATCCGTATCAGGTCATCAAACGGTTGCAGACCAAGTTGTGGCGGCCT
AGGCGAAGGTAGCATCTTTTAGATGAGGGTCACTCGAGGAGGTGAATAAA
GAGGCCGTGTGCGTGGCATGTCGAAAATCTGTAAGGGCCAGAGGAAGGGT
GGTAGAAGGCAATGGAAATAAAGGAAGTATAGAGCAACAGCAAGAAGAGA
GCATACGAGACCAGCAC
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Coding sequence (CDS) from alignment at chr16:896965..898631+

>NO16G03040.1 ID=NO16G03040.1|Name=NO16G03040.1|organism=Nannochloropsis oceanica|type=CDS|length=792bp|location=Sequence derived from alignment at chr16:896965..898631+ (Nannochloropsis oceanica)
ATGTCCACATCTTTGTCTTCCTCATTAAATGCATCTTCTTTGTCCGTCTC
GGCTGATTCCCGGAGGCTACCTGCAATCACTGCCACGAACGCCGAAAGCA
GCACCCACGACCACAACCAGAGCAGCAGCAGCAGCGGTAGCAGCAGCAAA
AATAACCGTATTGAGGCCTCTCAGGACCATGTCTTCGCGCATTTGGGCTA
TGACGCCATCATTGACGCCTTGGATGGCTTCAATTCCACAATATTCGCCT
ACGGTCAGACATCCAGTGGCAAAACATTTACCATTACGGGAGGACCAGAA
CGGTATGTGGACAGAGGCCTGATTCCAAGGGCATTGCAGATGATCTTTGG
GTCGAAAGCAGGAGGAGAAACCGTGAGGCGGAGCAAACTCAATCTGGTGG
ATTTGGCAGCTTTAGAACGCGTGCACAAGACAGGTGGTGGAGTTGGAGGA
GGCCGAGCAGGCCAAATGTCGAAGGAGTCCAAGTACATCAACCAGTCCTC
GTTTTATTTGGAGGAGGTAATCTTGGCCTTACACGAGCGACGGGCCCACG
TGCCCTATCGAAACAGCATGATGACCTCAGTGCTTCGGGACAGCTTAGGA
GAAAACTGTAAAACGATAATGGTTGCCACGGTCTCGATGGAAAAAGAACA
CACAAAGGAGTCATTATCAACCCGTCGATTCGCTATGCGCGTGGGTCAGA
TCCGGAGCGAGGCGCGGAGGAACGAAGACGTGGATCCGTATCAGGTCATC
AAACGGTTGCAGACCAAGTTGTGGCGGCCTAGGCGAAGGTAG
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Synonyms
Publications