NO16G02980.1, NO16G02980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02980.1
Unique NameNO16G02980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length527
Alignment locationchr16:873026..873552 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:873026..873552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO16G02980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02980NO16G02980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02980.1NO16G02980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02980.1.cds1NO16G02980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02980.1 ID=NO16G02980.1|Name=NO16G02980.1|organism=Nannochloropsis oceanica|type=mRNA|length=527bp
ACAGAATAATCAACTAAAGAGACACAAGTCATGGCTCTTTATTGCACACA
GCTTCGTCGTATCCTCTTCGCTGCCCTCCTTTTGGCGGCGCCCGTCCAAG
CTAGCCATCTCCGCGGGGCCATTCTCTCTGCTGCAAACAACAAGCAAGGT
AGGACAACGGCAGAGGCAGCGGTGACAGCAAGCATCGTTGCCGCACCGGA
GCCCATTCAATCAGTGTCCTTGCCTCCCATGCCCCTCAGCACGGAGGAGG
CGAACGGGAATATTCCCACCGGGGAAATGGTCGGGGGAGCGGCTAACGAG
GGAATGACGCACTTAGAGGAAAGCACCAGTGCGAACAGCACCGTCCCTTC
TGACCCATGCCCTGCCGACCAATGCTCCTACAACTGTAATTATGACGACG
AAGGGAACTACTCTTGCTTCTGCGGCTTGTGCGCGTAGATGGAAGTGGGA
AGGATGTAAGAGCGTAAAAAGCGTGGGATGGAGTAGGGGAAACAAAAAGA
TAGTAGCAATACAATTCATGACAGATG
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protein sequence of NO16G02980.1

>NO16G02980.1-protein ID=NO16G02980.1-protein|Name=NO16G02980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MALYCTQLRRILFAALLLAAPVQASHLRGAILSAANNKQGRTTAEAAVTA
SIVAAPEPIQSVSLPPMPLSTEEANGNIPTGEMVGGAANEGMTHLEESTS
ANSTVPSDPCPADQCSYNCNYDDEGNYSCFCGLCA*
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mRNA from alignment at chr16:873026..873552+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02980.1 ID=NO16G02980.1|Name=NO16G02980.1|organism=Nannochloropsis oceanica|type=mRNA|length=527bp|location=Sequence derived from alignment at chr16:873026..873552+ (Nannochloropsis oceanica)
ACAGAATAATCAACTAAAGAGACACAAGTCATGGCTCTTTATTGCACACA
GCTTCGTCGTATCCTCTTCGCTGCCCTCCTTTTGGCGGCGCCCGTCCAAG
CTAGCCATCTCCGCGGGGCCATTCTCTCTGCTGCAAACAACAAGCAAGGT
AGGACAACGGCAGAGGCAGCGGTGACAGCAAGCATCGTTGCCGCACCGGA
GCCCATTCAATCAGTGTCCTTGCCTCCCATGCCCCTCAGCACGGAGGAGG
CGAACGGGAATATTCCCACCGGGGAAATGGTCGGGGGAGCGGCTAACGAG
GGAATGACGCACTTAGAGGAAAGCACCAGTGCGAACAGCACCGTCCCTTC
TGACCCATGCCCTGCCGACCAATGCTCCTACAACTGTAATTATGACGACG
AAGGGAACTACTCTTGCTTCTGCGGCTTGTGCGCGTAGATGGAAGTGGGA
AGGATGTAAGAGCGTAAAAAGCGTGGGATGGAGTAGGGGAAACAAAAAGA
TAGTAGCAATACAATTCATGACAGATG
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Coding sequence (CDS) from alignment at chr16:873026..873552+

>NO16G02980.1 ID=NO16G02980.1|Name=NO16G02980.1|organism=Nannochloropsis oceanica|type=CDS|length=408bp|location=Sequence derived from alignment at chr16:873026..873552+ (Nannochloropsis oceanica)
ATGGCTCTTTATTGCACACAGCTTCGTCGTATCCTCTTCGCTGCCCTCCT
TTTGGCGGCGCCCGTCCAAGCTAGCCATCTCCGCGGGGCCATTCTCTCTG
CTGCAAACAACAAGCAAGGTAGGACAACGGCAGAGGCAGCGGTGACAGCA
AGCATCGTTGCCGCACCGGAGCCCATTCAATCAGTGTCCTTGCCTCCCAT
GCCCCTCAGCACGGAGGAGGCGAACGGGAATATTCCCACCGGGGAAATGG
TCGGGGGAGCGGCTAACGAGGGAATGACGCACTTAGAGGAAAGCACCAGT
GCGAACAGCACCGTCCCTTCTGACCCATGCCCTGCCGACCAATGCTCCTA
CAACTGTAATTATGACGACGAAGGGAACTACTCTTGCTTCTGCGGCTTGT
GCGCGTAG
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Synonyms
Publications