NO16G02880.1, NO16G02880.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO16G02880.1
Unique Name	NO16G02880.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1778
Alignment location	chr16:835708..837950 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr16	genome	chr16:835708..837950 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO16G02880.1 vs.
Match: EWM23823.1 (kynurenine 3-monooxygenase [Nannochloropsis gaditana])

HSP 1 Score: 810.8 bits (2093), Expect = 2.600e-231
Identity = 403/543 (74.22%), Postives = 454/543 (83.61%), Query Frame = 0

Query:   17 AALLASLSTIITHAFHFRPLRASPLCRPRTAATAATTMTTASKSATLPPSTAIVGAGPTGLFTAIVLARRGYQNITVYDRLPRPDDPSSPDWGNPYRSYNLGLGARGQIALGAAEVWNSIEPFCAQAIGRKDWTPEQGERPEQIYTERAYKTQVIQRDRIASCLLSEVENKYKDQISVLHDTECVGLTWLDEETGGREKAKGGSP-QRRGVRVRLHRELEEGKLDQWTEDARWVIGADGVRSALRGALEAKTTPSPNNKKTEKP-VRAYKLPERNEFVYKILPLDLRPKYGTGPGWRPDLNYSARTKGEVTIEALPTKEGVYVGVVLFRPTCPAIARIKDKEDARQFFAGSFPQFIDVIKEKDLARFATGPTFRLPSFSYAGPNINYKDNTLLLGDCIHSVKPYFGLGLNSALEDVMSLDRCLEETGDDLGKALPLFSSRIAPQAKALVEFQASFDYDAKTTEGFLRFILPLILDGIFHRYFPTIFAPNGIRLLQDHRSSFTQTRRRKRRDRIGQVLVIGTVAAGLGKAVGWVVREGVRVWLK 558
            A L  S     T AF F P R S L R RT A A +     S +  LP STAIVGAGPTGLFTA++LARRGYQNITVYDRLPRPDDPSSP WGNPYRSYNLGLGARGQIAL AA+ W SIEPFCAQAIGRKDWTPEQGERPEQIYT+R YKTQVIQRDRIASCLL E+E K+ DQ+SV H+ ECVGLTWLDE   G E +   +    +GVR+RLHR+ E  +L+QWT +ARWV+GADGVRSALR ALE KT P  ++ +T+K  VR  KLPERNEFVYKILPLDLRPKYGTGPGWRPDLNYSAR+KGEVTIEALPT+EG++VGVVLFRP   AIA+I+ KEDAR+FFAGSFPQF+DVI+E+DLARFATGPTFRLPSFSY GP+I Y+DNTLLLGDCIHSVKPYFGLGLNSALEDVM+LD+CL E+ DD+ KALPLFSSR APQAKALVEFQASFDY+A T EGFLRF+LPLILDGIFHRYFP  FAPNGIRLLQDHRS+F QTRRRK+RDRIGQ +++G +  G+GK +GW V+   R+ LK
Sbjct:   17 AVLFVSFFLSATCAFRF-PRRTSALLRHRTYA-ATSAFHPTSTNVHLPASTAIVGAGPTGLFTALMLARRGYQNITVYDRLPRPDDPSSPTWGNPYRSYNLGLGARGQIALRAADAWESIEPFCAQAIGRKDWTPEQGERPEQIYTDREYKTQVIQRDRIASCLLGELERKHGDQVSVWHNVECVGLTWLDEANPGPEASPSSAEIGEKGVRLRLHRQCEGQELEQWTTEARWVVGADGVRSALRSALEVKTAPGGHHGQTQKERVRTIKLPERNEFVYKILPLDLRPKYGTGPGWRPDLNYSARSKGEVTIEALPTREGIFVGVVLFRPDSSAIAKIQGKEDAREFFAGSFPQFLDVIREEDLARFATGPTFRLPSFSYCGPSIFYRDNTLLLGDCIHSVKPYFGLGLNSALEDVMALDKCLSESEDDVSKALPLFSSRTAPQAKALVEFQASFDYNANTLEGFLRFVLPLILDGIFHRYFPAFFAPNGIRLLQDHRSTFRQTRRRKQRDRIGQAVILGVLLTGIGKGLGWAVKVAARILLK 557

The following BLAST results are available for this feature:

BLAST of NO16G02880.1 vs.

BLAST of NO16G02880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23823.1	2.600e-231	74.22	kynurenine 3-monooxygenase [Nannochloropsis gadita...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO16G02880	NO16G02880	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO16G02880.1	NO16G02880.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO16G02880.1.cds1	NO16G02880.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G02880.1.cds2	NO16G02880.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G02880.1.cds3	NO16G02880.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr16:835708..837950-
coding sequence from alignment at chr16:835708..837950-

mRNA sequence

>NO16G02880.1 ID=NO16G02880.1|Name=NO16G02880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1778bp
AACAGAGCTAGCGATCATGGCACGCAGGCGCTCCAGCCGTACTGCGACGG
CCTCCGTCCTAAACGCTGCCCTGCTTGCCTCCCTCTCCACGATCATAACG
CATGCCTTCCACTTCCGGCCCCTACGAGCCTCTCCCCTCTGTCGTCCCCG
CACCGCCGCGACCGCTGCCACAACCATGACCACTGCATCAAAAAGCGCCA
CATTACCTCCAAGCACTGCCATTGTCGGAGCCGGTCCCACTGGCCTGTTC
ACTGCCATTGTGCTCGCCCGGCGTGGCTATCAAAATATCACGGTGTATGA
CCGACTCCCACGGCCCGATGACCCTTCTTCTCCCGATTGGGGCAACCCGT
ACAGGAGCTATAATTTAGGCCTGGGAGCACGGGGCCAGATTGCTCTTGGG
GCGGCGGAAGTGTGGAACTCAATAGAGCCTTTTTGCGCCCAGGCGATTGG
ACGGAAGGACTGGACACCCGAACAGGGAGAGCGGCCAGAGCAGATCTACA
CTGAGAGGGCATACAAAACCCAAGTCATTCAACGAGACCGGATAGCTAGT
TGTCTGCTTTCGGAGGTTGAAAATAAGTACAAAGATCAGATCTCCGTCTT
GCACGATACCGAATGCGTGGGCCTCACGTGGTTGGACGAAGAGACGGGAG
GGAGGGAGAAGGCAAAGGGTGGATCGCCGCAACGACGTGGCGTGCGTGTC
CGCTTGCACCGGGAATTGGAGGAAGGCAAGCTTGATCAGTGGACAGAGGA
CGCGCGCTGGGTGATCGGCGCGGATGGGGTGCGCTCAGCCCTTCGTGGGG
CCCTAGAAGCCAAGACGACCCCTTCCCCGAACAACAAGAAGACGGAAAAG
CCGGTGCGCGCCTACAAACTCCCAGAACGGAACGAATTCGTCTACAAGAT
TCTACCCCTGGACTTACGACCCAAGTATGGGACAGGACCTGGTTGGCGAC
CGGATCTGAATTATTCCGCGCGAACAAAGGGCGAAGTCACCATTGAGGCA
TTGCCTACGAAAGAAGGCGTGTACGTCGGGGTGGTGCTCTTTCGGCCGAC
CTGTCCCGCAATCGCTCGGATAAAGGACAAAGAAGATGCGCGTCAATTTT
TCGCTGGGTCATTTCCTCAGTTTATTGACGTGATCAAGGAAAAGGATCTC
GCTCGCTTTGCGACCGGTCCAACGTTTCGGTTGCCAAGTTTTTCCTACGC
GGGCCCCAATATCAACTACAAGGACAACACGCTCCTTCTCGGGGACTGTA
TCCATTCGGTCAAGCCTTATTTTGGCCTCGGTCTGAACTCTGCTTTGGAA
GACGTCATGTCGTTGGATAGGTGTCTGGAGGAGACGGGCGACGATCTTGG
CAAGGCCCTTCCCCTCTTCTCTTCTCGCATTGCGCCGCAAGCCAAAGCTC
TGGTGGAATTTCAGGCCTCGTTTGACTACGATGCGAAGACCACGGAAGGC
TTCCTCCGCTTCATCCTTCCTTTGATCTTGGACGGTATCTTCCATCGTTA
CTTCCCCACCATTTTCGCGCCAAATGGTATCCGTTTGCTGCAGGATCATC
GCTCCTCTTTTACGCAGACAAGGCGGCGGAAGCGAAGGGATCGTATCGGA
CAGGTGCTGGTAATAGGGACAGTGGCGGCGGGCTTGGGGAAAGCCGTGGG
GTGGGTGGTGAGAGAGGGCGTGCGTGTGTGGTTGAAGAGGTAGAAGAAGC
AGAGGGGCGGACACGAACAAGTAAATATGAAAGGCCCGAGAACAAGAAAA
GTAGTATTGGAAAGCTCCAAAGAGTGAC

protein sequence of NO16G02880.1

>NO16G02880.1-protein ID=NO16G02880.1-protein|Name=NO16G02880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=559bp
MARRRSSRTATASVLNAALLASLSTIITHAFHFRPLRASPLCRPRTAATA
ATTMTTASKSATLPPSTAIVGAGPTGLFTAIVLARRGYQNITVYDRLPRP
DDPSSPDWGNPYRSYNLGLGARGQIALGAAEVWNSIEPFCAQAIGRKDWT
PEQGERPEQIYTERAYKTQVIQRDRIASCLLSEVENKYKDQISVLHDTEC
VGLTWLDEETGGREKAKGGSPQRRGVRVRLHRELEEGKLDQWTEDARWVI
GADGVRSALRGALEAKTTPSPNNKKTEKPVRAYKLPERNEFVYKILPLDL
RPKYGTGPGWRPDLNYSARTKGEVTIEALPTKEGVYVGVVLFRPTCPAIA
RIKDKEDARQFFAGSFPQFIDVIKEKDLARFATGPTFRLPSFSYAGPNIN
YKDNTLLLGDCIHSVKPYFGLGLNSALEDVMSLDRCLEETGDDLGKALPL
FSSRIAPQAKALVEFQASFDYDAKTTEGFLRFILPLILDGIFHRYFPTIF
APNGIRLLQDHRSSFTQTRRRKRRDRIGQVLVIGTVAAGLGKAVGWVVRE
GVRVWLKR*

mRNA from alignment at chr16:835708..837950-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO16G02880.1 ID=NO16G02880.1|Name=NO16G02880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2243bp|location=Sequence derived from alignment at chr16:835708..837950- (Nannochloropsis oceanica)
AACAGAGCTAGCGATCATGGCACGCAGGCGCTCCAGCCGTACTGCGACGG
CCTCCGTCCTAAACGCTGCCCTGCTTGCCTCCCTCTCCACGATCATAACG
CATGCCTTCCACTTCCGGCCCCTACGAGCCTCTCCCCTCTGTCGTCCCCG
CACCGCCGCGACCGCTGCCACAACCATGACCACTGCATCAAAAAGCGCCA
CATTACCTCCAAGCACTGCCATTGTCGGAGCCGGTCCCACTGGCCTGTTC
ACTGCCATTGTGCTCGCCCGGCGTGGCTATCAAAATATCACGGTGTATGA
CCGACTCCCACGGCCCGATGACCCTTCTTCTCCCGATTGGGGCAACCCGT
ACAGGAGCTATAATTTAGGCCTGGGAGCACGGGGCCAGATTGCTCTTGGG
GCGGCGGAAGTGTGGAACTCAATAGAGCCTTTTTGCGCCCAGGCGATTGG
ACGGAAGGACTGGACACCCGAACAGGGAGAGCGGCCAGAGCAGATCTACA
CTGAGAGGTAAAATTGCGGTATGACAAGAGAGACAAAAAATGAGGAACTG
GAGAAAAAGGAGAATGACAATAATCTGTCTAGAAGGCATATTTGACCATT
CAACCATTTTTCTACAATCGCACCCTCACTAATTTCTCTCTTCCTTCCTC
CCTTCTACCCTCCCTCCTTTCCTCCAACATCAGGGCATACAAAACCCAAG
TCATTCAACGAGACCGGATAGCTAGTTGTCTGCTTTCGGAGGTTGAAAAT
AAGTACAAAGATCAGATCTCCGTCTTGCACGATACCGAATGCGTGGGCCT
CACGTGGTTGGACGAAGAGACGGGAGGGAGGGAGAAGGCAAAGGGTGGAT
CGCCGCAACGACGTGGCGTGCGTGTCCGCTTGCACCGGGAATTGGAGGAA
GGCAAGCTTGATCAGTGGACAGAGGACGCGCGCTGGGTGATCGGCGCGGA
TGGGGTGCGCTCAGCCCTTCGTGGGGCCCTAGAAGCCAAGACGACCCCTT
CCCCGAACAACAAGAAGACGGAAAAGCCGGTGCGCGCCTACAAACTCCCA
GAACGGAACGAATTCGTCTACAAGATTCTACCCCTGGACTTACGACCCAA
GTATGGGACAGGACCTGGTTGGCGACCGGATCTGAATTATTCCGCGCGAA
CAAAGGGCGAAGTCACCATTGAGGCATTGCCTACGAAAGAAGGCGTGTAC
GTCGGGGTGGTGCTCTTTCGGCCGACCTGTCCCGCAATCGCTCGGATAAA
GGACAAAGAAGATGCGCGTCAATTTTTCGCTGGGTCATTTCCTCAGTTTA
TTGACGTGATCAAGGAAAAGGATCTCGCTCGCTTTGCGACCGGTCCAACG
TTTCGGTTGCCAAGTTTTTCCTACGCGGGCCCCAATATCAACTACAAGGA
CAACACGCTCCTTCTCGGGGACTGTATCCATTCGGTCAAGCCTTATTTTG
GCCTCGGTCTGAACTCTGCTTTGGAAGACGTCATGTCGTTGGATAGGTGT
CTGGAGGAGACGGGCGACGATCTTGGCAAGGTACGCCCACTTTCACTGCT
TGTCATGATTCGGGGTTGTTTGCGTGTCCGTGAGTTTTTTTTCCTGTTCC
TGCAGCTCTATTTGTGTATGGCCTGTGTGCTTTACTTTCTGACCTTGCTG
CTCAATTTGTGCGTGGGATTGTCGCTGTCTTTGTGCTTATGCTTCAGTCT
ATTTGTATGTCTACCAGGGCCAGGGGATGGCTTAAAAGAACCGCGAATTG
GGTATGCATACACTTAAACTTTGGTCGTCTCACACGCTCCCTCCCCTCTG
ACCCTCTCCTCCACACCAGGCCCTTCCCCTCTTCTCTTCTCGCATTGCGC
CGCAAGCCAAAGCTCTGGTGGAATTTCAGGCCTCGTTTGACTACGATGCG
AAGACCACGGAAGGCTTCCTCCGCTTCATCCTTCCTTTGATCTTGGACGG
TATCTTCCATCGTTACTTCCCCACCATTTTCGCGCCAAATGGTATCCGTT
TGCTGCAGGATCATCGCTCCTCTTTTACGCAGACAAGGCGGCGGAAGCGA
AGGGATCGTATCGGACAGGTGCTGGTAATAGGGACAGTGGCGGCGGGCTT
GGGGAAAGCCGTGGGGTGGGTGGTGAGAGAGGGCGTGCGTGTGTGGTTGA
AGAGGTAGAAGAAGCAGAGGGGCGGACACGAACAAGTAAATATGAAAGGC
CCGAGAACAAGAAAAGTAGTATTGGAAAGCTCCAAAGAGTGAC

Coding sequence (CDS) from alignment at chr16:835708..837950-

>NO16G02880.1 ID=NO16G02880.1|Name=NO16G02880.1|organism=Nannochloropsis oceanica|type=CDS|length=1677bp|location=Sequence derived from alignment at chr16:835708..837950- (Nannochloropsis oceanica)
ATGGCACGCAGGCGCTCCAGCCGTACTGCGACGGCCTCCGTCCTAAACGC
TGCCCTGCTTGCCTCCCTCTCCACGATCATAACGCATGCCTTCCACTTCC
GGCCCCTACGAGCCTCTCCCCTCTGTCGTCCCCGCACCGCCGCGACCGCT
GCCACAACCATGACCACTGCATCAAAAAGCGCCACATTACCTCCAAGCAC
TGCCATTGTCGGAGCCGGTCCCACTGGCCTGTTCACTGCCATTGTGCTCG
CCCGGCGTGGCTATCAAAATATCACGGTGTATGACCGACTCCCACGGCCC
GATGACCCTTCTTCTCCCGATTGGGGCAACCCGTACAGGAGCTATAATTT
AGGCCTGGGAGCACGGGGCCAGATTGCTCTTGGGGCGGCGGAAGTGTGGA
ACTCAATAGAGCCTTTTTGCGCCCAGGCGATTGGACGGAAGGACTGGACA
CCCGAACAGGGAGAGCGGCCAGAGCAGATCTACACTGAGAGGGCATACAA
AACCCAAGTCATTCAACGAGACCGGATAGCTAGTTGTCTGCTTTCGGAGG
TTGAAAATAAGTACAAAGATCAGATCTCCGTCTTGCACGATACCGAATGC
GTGGGCCTCACGTGGTTGGACGAAGAGACGGGAGGGAGGGAGAAGGCAAA
GGGTGGATCGCCGCAACGACGTGGCGTGCGTGTCCGCTTGCACCGGGAAT
TGGAGGAAGGCAAGCTTGATCAGTGGACAGAGGACGCGCGCTGGGTGATC
GGCGCGGATGGGGTGCGCTCAGCCCTTCGTGGGGCCCTAGAAGCCAAGAC
GACCCCTTCCCCGAACAACAAGAAGACGGAAAAGCCGGTGCGCGCCTACA
AACTCCCAGAACGGAACGAATTCGTCTACAAGATTCTACCCCTGGACTTA
CGACCCAAGTATGGGACAGGACCTGGTTGGCGACCGGATCTGAATTATTC
CGCGCGAACAAAGGGCGAAGTCACCATTGAGGCATTGCCTACGAAAGAAG
GCGTGTACGTCGGGGTGGTGCTCTTTCGGCCGACCTGTCCCGCAATCGCT
CGGATAAAGGACAAAGAAGATGCGCGTCAATTTTTCGCTGGGTCATTTCC
TCAGTTTATTGACGTGATCAAGGAAAAGGATCTCGCTCGCTTTGCGACCG
GTCCAACGTTTCGGTTGCCAAGTTTTTCCTACGCGGGCCCCAATATCAAC
TACAAGGACAACACGCTCCTTCTCGGGGACTGTATCCATTCGGTCAAGCC
TTATTTTGGCCTCGGTCTGAACTCTGCTTTGGAAGACGTCATGTCGTTGG
ATAGGTGTCTGGAGGAGACGGGCGACGATCTTGGCAAGGCCCTTCCCCTC
TTCTCTTCTCGCATTGCGCCGCAAGCCAAAGCTCTGGTGGAATTTCAGGC
CTCGTTTGACTACGATGCGAAGACCACGGAAGGCTTCCTCCGCTTCATCC
TTCCTTTGATCTTGGACGGTATCTTCCATCGTTACTTCCCCACCATTTTC
GCGCCAAATGGTATCCGTTTGCTGCAGGATCATCGCTCCTCTTTTACGCA
GACAAGGCGGCGGAAGCGAAGGGATCGTATCGGACAGGTGCTGGTAATAG
GGACAGTGGCGGCGGGCTTGGGGAAAGCCGTGGGGTGGGTGGTGAGAGAG
GGCGTGCGTGTGTGGTTGAAGAGGTAG

Synonyms

Publications