NO16G02830.1, NO16G02830.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO16G02830.1
Unique Name	NO16G02830.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2074
Alignment location	chr16:814579..817191 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr16	genome	chr16:814579..817191 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO16G02830.1 vs.
Match: EWM23827.1 (mrp-like protein [Nannochloropsis gaditana])

HSP 1 Score: 577.0 bits (1486), Expect = 7.100e-161
Identity = 322/452 (71.24%), Postives = 362/452 (80.09%), Query Frame = 0

Query:   68 RALSTGSVKSDIREAAELQDKVLRCLDATVFDPSLPTRSIVDLGLVKSVRVNPIQGEIRLSLEYPTAGHPHTETVKARIYQALQAATSRHTQGLLPFSLPPSLTTVRIDTPVPRLTSSPSSSVPLGSGLTHVQHVVAVSSCKGGVGKSTVAVNLALALARQGNRVGLLDLDIYGPSLPTLLHVEDKAIRPSSRNPKFIQPLLYPSSASSSSPSSPSFPLPFPVKHLSFGHVKPSPSLPGAGGGEAAVLRGPLASKVVNQLLLCTEWGELDFLLLDLPPGTGDVQITVNQSMGGRAGGREGGLSGAVVVTTPQELAVVDVVKGVRMMEGMKVPTLACVVNMAYFVCGSCQEKHYVFGGGGGGGGVKERIRGAMTVGKEKEGGREEEG-VLSEEAFFELPLSPAVSRGNDRGRPVMMMEEGEVGGEEGGREGGQAAVQDVYFKLATRVAEEMFR 519
            R  S+ + + DIRE AELQDKVLRCLDATVFDP +P RSIVDLGLVKSVRV+P +G+I LSL YPTAGHPH   VK  I QAL AATS   Q  LPF+LPPSL +V I  P P L+SSPSSS PLGSGL+HVQ++VAVSSCKGGVGKSTVAVNLALALA+QGNRVGLLD+DIYGPSLPTLLHV+       S  P   QP ++P+    SS      P   P+KHLSFGHVKPSP+LPGAGG EAAVLRGPLASKVV QLLL TEWGELD+LLLDLPPGTGDVQITV Q++GG  GGREGGL+GAVVVTTPQELA+VDVVKGVRM+E M+VPTLACVVNMAYFVC +C  +H+VFGG  G   +K R+RGAM      EGGRE  G VL+EE FFELPLSPAVSRGND GRPV MME+G  GG EGG++GG+ A+Q VYF LATRVAEE+FR
Sbjct:   31 RFSSSNAGQFDIREMAELQDKVLRCLDATVFDPCMPNRSIVDLGLVKSVRVDPAKGKIALSLVYPTAGHPHLGKVKHDITQALHAATSPSAQTFLPFALPPSLRSVDIAVPPPTLSSSPSSSAPLGSGLSHVQNIVAVSSCKGGVGKSTVAVNLALALAKQGNRVGLLDVDIYGPSLPTLLHVKGGRGGRPSLPP---QPQIHPTLTLPSSLLRHLLPPFPPLKHLSFGHVKPSPALPGAGGVEAAVLRGPLASKVVTQLLLSTEWGELDYLLLDLPPGTGDVQITVTQAVGG-GGGREGGLNGAVVVTTPQELAMVDVVKGVRMLEEMQVPTLACVVNMAYFVCDACDAQHHVFGGKEGKERLKARVRGAM----RGEGGREGAGEVLTEEGFFELPLSPAVSRGNDTGRPV-MMEDGGEGGREGGKKGGREAIQQVYFALATRVAEEIFR 473

The following BLAST results are available for this feature:

BLAST of NO16G02830.1 vs.

BLAST of NO16G02830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23827.1	7.100e-161	71.24	mrp-like protein [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO16G02830	NO16G02830	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO16G02830.1	NO16G02830.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO16G02830.1.cds1	NO16G02830.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G02830.1.cds2	NO16G02830.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G02830.1.cds3	NO16G02830.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G02830.1.cds4	NO16G02830.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr16:814579..817191+
coding sequence from alignment at chr16:814579..817191+

mRNA sequence

>NO16G02830.1 ID=NO16G02830.1|Name=NO16G02830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2074bp
ATGATGTGCAGAGCTGGAAACTCCAATGGGGTCACCAGTATGTTCTATCT
GGTGCGGCAGCGCTGTCTTTCCTCATGGTGCAATGGCGCAAGAGTTCGCC
CCCGGCGCCTTTTCCATGTCGGACCATCATCGTCATCATCACCATCATCG
TCCTTGCGGCCGTCCTTCTTATTTTCCACTCGGTCACCGTCGCACTGTCT
CCGCGCGTTGTCCACTGGCAGCGTCAAAAGCGATATCAGAGAAGCTGCCG
AGCTGCAAGACAAGGTATTGCGGTGTCTGGACGCGACGGTATTTGACCCG
AGTTTGCCCACCCGCTCCATCGTGGACTTGGGCCTGGTCAAGAGTGTCCG
CGTGAACCCCATACAGGGCGAGATCCGCCTTTCTCTAGAGTATCCAACCG
CCGGGCACCCTCACACGGAAACGGTCAAAGCGCGCATCTACCAAGCACTA
CAAGCGGCCACCTCTCGACACACTCAAGGCCTCCTCCCCTTCTCTCTCCC
CCCCTCCCTCACAACCGTCCGCATCGACACCCCTGTGCCTCGGCTTACCT
CTTCCCCGTCCTCGTCCGTGCCATTGGGCTCAGGCCTCACGCATGTCCAA
CATGTTGTTGCCGTTTCATCCTGTAAAGGAGGGGTGGGGAAGAGCACCGT
TGCCGTCAACCTCGCCCTTGCGCTGGCCAGGCAAGGAAATAGGGTAGGCC
TGCTCGATTTAGATATCTATGGACCCAGTCTACCGACGCTGCTGCATGTA
GAAGACAAGGCAATACGGCCCTCTTCTCGCAACCCAAAATTCATCCAGCC
CCTTCTCTACCCTTCCTCCGCCTCGTCTTCCTCCCCTTCCTCGCCCTCCT
TCCCCTTGCCCTTCCCCGTGAAGCACCTTTCGTTCGGGCACGTCAAACCC
TCCCCTTCCCTTCCTGGAGCGGGAGGAGGAGAAGCCGCAGTCCTCCGTGG
CCCGTTAGCGAGCAAGGTTGTCAATCAATTGCTTCTCTGCACAGAATGGG
GTGAATTAGACTTCCTCCTTCTTGACTTGCCTCCCGGGACAGGAGACGTG
CAAATAACAGTGAATCAGAGCATGGGCGGGCGGGCGGGAGGGAGGGAGGG
AGGATTGAGTGGTGCAGTGGTCGTAACGACGCCGCAGGAGCTGGCGGTGG
TGGATGTGGTGAAGGGTGTGAGGATGATGGAAGGGATGAAGGTCCCGACC
TTGGCATGCGTGGTAAATATGGCCTATTTTGTGTGTGGGTCTTGTCAGGA
GAAGCACTATGTGTTTGGAGGAGGGGGAGGAGGTGGAGGAGTGAAGGAGA
GGATTAGGGGAGCAATGACCGTTGGGAAGGAGAAGGAGGGCGGGAGGGAG
GAGGAGGGCGTCTTGTCGGAAGAGGCGTTTTTTGAATTGCCTCTGTCTCC
GGCTGTATCGCGAGGGAACGACAGGGGGAGGCCCGTGATGATGATGGAGG
AGGGGGAGGTGGGAGGGGAGGAAGGCGGGAGAGAGGGAGGGCAGGCAGCA
GTGCAAGACGTGTACTTTAAGTTGGCGACCCGAGTGGCCGAGGAGATGTT
CCGGCGATGGTACGACGGGAAAGTCGTGCCATTGGTGGAGTACAATGATA
AGAATGATGTAATTGTCATGCGCATATTCAGTAAGGAGGCTGCCAGACAG
ATCCGGCTGCGGCCAGCTGACGTCCGTTGGTCGGATCCACGGACGGGGGA
GGCATTGAAGGAGGGCGGGGAAGGAAAAGGCGCGAAGGTGACGCCAGTGA
CGTTTGAGAAGAAAGGGAATTATGGTGTGAGTGTGTTGTGGAGTGATGGG
CACTATGCCTCCATATACACGTACGAGGCGTTGGAGAGGATGGCGGCGCG
GATCGCGGCGGAGAAGGAGGAGGGAGAGAATCTAATCAAAATGAAGTGAT
TTTGATTAGAATGATGAAAATTTGATTACATGCAAGTGAATGAATTGAAA
GACGTAGGATGGGAATATAAATGCTTGGTCGAGGAGGTGGATGAAGCAAA
TCAAATAAAGGAAGAAAAAATGATAAAGAAATGACCGAAAAATGTAAGAA
AGGAAAGAAACATTCATCCTTCCA

protein sequence of NO16G02830.1

>NO16G02830.1-protein ID=NO16G02830.1-protein|Name=NO16G02830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=633bp
MMCRAGNSNGVTSMFYLVRQRCLSSWCNGARVRPRRLFHVGPSSSSSPSS
SLRPSFLFSTRSPSHCLRALSTGSVKSDIREAAELQDKVLRCLDATVFDP
SLPTRSIVDLGLVKSVRVNPIQGEIRLSLEYPTAGHPHTETVKARIYQAL
QAATSRHTQGLLPFSLPPSLTTVRIDTPVPRLTSSPSSSVPLGSGLTHVQ
HVVAVSSCKGGVGKSTVAVNLALALARQGNRVGLLDLDIYGPSLPTLLHV
EDKAIRPSSRNPKFIQPLLYPSSASSSSPSSPSFPLPFPVKHLSFGHVKP
SPSLPGAGGGEAAVLRGPLASKVVNQLLLCTEWGELDFLLLDLPPGTGDV
QITVNQSMGGRAGGREGGLSGAVVVTTPQELAVVDVVKGVRMMEGMKVPT
LACVVNMAYFVCGSCQEKHYVFGGGGGGGGVKERIRGAMTVGKEKEGGRE
EEGVLSEEAFFELPLSPAVSRGNDRGRPVMMMEEGEVGGEEGGREGGQAA
VQDVYFKLATRVAEEMFRRWYDGKVVPLVEYNDKNDVIVMRIFSKEAARQ
IRLRPADVRWSDPRTGEALKEGGEGKGAKVTPVTFEKKGNYGVSVLWSDG
HYASIYTYEALERMAARIAAEKEEGENLIKMK*

mRNA from alignment at chr16:814579..817191+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO16G02830.1 ID=NO16G02830.1|Name=NO16G02830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2613bp|location=Sequence derived from alignment at chr16:814579..817191+ (Nannochloropsis oceanica)
ATGATGTGCAGAGCTGGAAACTCCAATGGGTATGGATGGGTATGCCTAAA
TTGATCGGTTGTTTGACCAAGTAACCTCCCCTCTTTCCGTTTATGCGTCA
TGTTAACGTACTGGATGAACTCCTTCCAGGATGTATTGCGACTCATGCTA
CGACATTGCCCCCTCACAAACCACCTCGACATGCACAATAACCTCAGGGT
CACCAGTATGTTCTATCTGGTGCGGCAGCGCTGTCTTTCCTCATGGTGCA
ATGGCGCAAGAGTTCGCCCCCGGCGCCTTTTCCATGTCGGACCATCATCG
TCATCATCACCATCATCGTCCTTGCGGCCGTCCTTCTTATTTTCCACTCG
GTCACCGTCGCACTGTCTCCGCGCGTTGTCCACTGGCAGCGTCAAAAGCG
ATATCAGAGAAGCTGCCGAGCTGCAAGACAAGGTATTGCGGTGTCTGGAC
GCGACGGTATTTGACCCGAGTTTGCCCACCCGCTCCATCGTGGACTTGGG
CCTGGTCAAGGTAGGAAGCAAGGGTTGAGGTGGAGGGATCGAGGGGGGGG
AGGGCATCTCGCAAAACAGGCTTGTAATTCTACATATCCTTGTACCAGAA
TTTTACCACCTATCCATGGGTGTAATCTTAGCTAGAGCAGACTCTAATTG
CTAGGTTACAAAGGTCCCCAAAATAAATTCAGATGCCCTCATCCTCATTT
TCCCCCCTTTCTCTTCGGTCCGTTCCCATCCAAACCTGAAACTCCACAGA
GTGTCCGCGTGAACCCCATACAGGGCGAGATCCGCCTTTCTCTAGAGTAT
CCAACCGCCGGGCACCCTCACACGGAAACGGTCAAAGCGCGCATCTACCA
AGCACTACAAGCGGCCACCTCTCGACACACTCAAGGCCTCCTCCCCTTCT
CTCTCCCCCCCTCCCTCACAACCGTCCGCATCGACACCCCTGTGCCTCGG
CTTACCTCTTCCCCGTCCTCGTCCGTGCCATTGGGCTCAGGCCTCACGCA
TGTCCAACATGTTGTTGCCGTTTCATCCTGTAAAGGAGGGGTGGGGAAGA
GCACCGTTGCCGTCAACCTCGCCCTTGCGCTGGCCAGGCAAGGAAATAGG
GTAGGCCTGCTCGATTTAGATATCTATGGACCCAGTCTACCGACGCTGCT
GCATGTAGAAGGTGAGGTGGAGGGATGGAGGGAGGGAGGGTAGAGGTAGA
GGCTTTGCCATACCATCCAGTACAAAAGGGCTCAGTCTCTTCCCCCCTTT
TCCTTCCTCCCTCCCTGCCTCCCTTCCTCCCTCACTTCCTCAGACAAGGC
AATACGGCCCTCTTCTCGCAACCCAAAATTCATCCAGCCCCTTCTCTACC
CTTCCTCCGCCTCGTCTTCCTCCCCTTCCTCGCCCTCCTTCCCCTTGCCC
TTCCCCGTGAAGCACCTTTCGTTCGGGCACGTCAAACCCTCCCCTTCCCT
TCCTGGAGCGGGAGGAGGAGAAGCCGCAGTCCTCCGTGGCCCGTTAGCGA
GCAAGGTTGTCAATCAATTGCTTCTCTGCACAGAATGGGGTGAATTAGAC
TTCCTCCTTCTTGACTTGCCTCCCGGGACAGGAGACGTGCAAATAACAGT
GAATCAGAGCATGGGCGGGCGGGCGGGAGGGAGGGAGGGAGGATTGAGTG
GTGCAGTGGTCGTAACGACGCCGCAGGAGCTGGCGGTGGTGGATGTGGTG
AAGGGTGTGAGGATGATGGAAGGGATGAAGGTCCCGACCTTGGCATGCGT
GGTAAATATGGCCTATTTTGTGTGTGGGTCTTGTCAGGAGAAGCACTATG
TGTTTGGAGGAGGGGGAGGAGGTGGAGGAGTGAAGGAGAGGATTAGGGGA
GCAATGACCGTTGGGAAGGAGAAGGAGGGCGGGAGGGAGGAGGAGGGCGT
CTTGTCGGAAGAGGCGTTTTTTGAATTGCCTCTGTCTCCGGCTGTATCGC
GAGGGAACGACAGGGGGAGGCCCGTGATGATGATGGAGGAGGGGGAGGTG
GGAGGGGAGGAAGGCGGGAGAGAGGGAGGGCAGGCAGCAGTGCAAGACGT
GTACTTTAAGTTGGCGACCCGAGTGGCCGAGGAGATGTTCCGGCGATGGT
ACGACGGGAAAGTCGTGCCATTGGTGGAGTACAATGATAAGAATGATGTA
ATTGTCATGCGCATATTCAGTAAGGAGGCTGCCAGACAGATCCGGCTGCG
GCCAGCTGACGTCCGTTGGTCGGATCCACGGACGGGGGAGGCATTGAAGG
AGGGCGGGGAAGGAAAAGGCGCGAAGGTGACGCCAGTGACGTTTGAGAAG
AAAGGGAATTATGGTGTGAGTGTGTTGTGGAGTGATGGGCACTATGCCTC
CATATACACGTACGAGGCGTTGGAGAGGATGGCGGCGCGGATCGCGGCGG
AGAAGGAGGAGGGAGAGAATCTAATCAAAATGAAGTGATTTTGATTAGAA
TGATGAAAATTTGATTACATGCAAGTGAATGAATTGAAAGACGTAGGATG
GGAATATAAATGCTTGGTCGAGGAGGTGGATGAAGCAAATCAAATAAAGG
AAGAAAAAATGATAAAGAAATGACCGAAAAATGTAAGAAAGGAAAGAAAC
ATTCATCCTTCCA

Coding sequence (CDS) from alignment at chr16:814579..817191+

>NO16G02830.1 ID=NO16G02830.1|Name=NO16G02830.1|organism=Nannochloropsis oceanica|type=CDS|length=1899bp|location=Sequence derived from alignment at chr16:814579..817191+ (Nannochloropsis oceanica)
ATGATGTGCAGAGCTGGAAACTCCAATGGGGTCACCAGTATGTTCTATCT
GGTGCGGCAGCGCTGTCTTTCCTCATGGTGCAATGGCGCAAGAGTTCGCC
CCCGGCGCCTTTTCCATGTCGGACCATCATCGTCATCATCACCATCATCG
TCCTTGCGGCCGTCCTTCTTATTTTCCACTCGGTCACCGTCGCACTGTCT
CCGCGCGTTGTCCACTGGCAGCGTCAAAAGCGATATCAGAGAAGCTGCCG
AGCTGCAAGACAAGGTATTGCGGTGTCTGGACGCGACGGTATTTGACCCG
AGTTTGCCCACCCGCTCCATCGTGGACTTGGGCCTGGTCAAGAGTGTCCG
CGTGAACCCCATACAGGGCGAGATCCGCCTTTCTCTAGAGTATCCAACCG
CCGGGCACCCTCACACGGAAACGGTCAAAGCGCGCATCTACCAAGCACTA
CAAGCGGCCACCTCTCGACACACTCAAGGCCTCCTCCCCTTCTCTCTCCC
CCCCTCCCTCACAACCGTCCGCATCGACACCCCTGTGCCTCGGCTTACCT
CTTCCCCGTCCTCGTCCGTGCCATTGGGCTCAGGCCTCACGCATGTCCAA
CATGTTGTTGCCGTTTCATCCTGTAAAGGAGGGGTGGGGAAGAGCACCGT
TGCCGTCAACCTCGCCCTTGCGCTGGCCAGGCAAGGAAATAGGGTAGGCC
TGCTCGATTTAGATATCTATGGACCCAGTCTACCGACGCTGCTGCATGTA
GAAGACAAGGCAATACGGCCCTCTTCTCGCAACCCAAAATTCATCCAGCC
CCTTCTCTACCCTTCCTCCGCCTCGTCTTCCTCCCCTTCCTCGCCCTCCT
TCCCCTTGCCCTTCCCCGTGAAGCACCTTTCGTTCGGGCACGTCAAACCC
TCCCCTTCCCTTCCTGGAGCGGGAGGAGGAGAAGCCGCAGTCCTCCGTGG
CCCGTTAGCGAGCAAGGTTGTCAATCAATTGCTTCTCTGCACAGAATGGG
GTGAATTAGACTTCCTCCTTCTTGACTTGCCTCCCGGGACAGGAGACGTG
CAAATAACAGTGAATCAGAGCATGGGCGGGCGGGCGGGAGGGAGGGAGGG
AGGATTGAGTGGTGCAGTGGTCGTAACGACGCCGCAGGAGCTGGCGGTGG
TGGATGTGGTGAAGGGTGTGAGGATGATGGAAGGGATGAAGGTCCCGACC
TTGGCATGCGTGGTAAATATGGCCTATTTTGTGTGTGGGTCTTGTCAGGA
GAAGCACTATGTGTTTGGAGGAGGGGGAGGAGGTGGAGGAGTGAAGGAGA
GGATTAGGGGAGCAATGACCGTTGGGAAGGAGAAGGAGGGCGGGAGGGAG
GAGGAGGGCGTCTTGTCGGAAGAGGCGTTTTTTGAATTGCCTCTGTCTCC
GGCTGTATCGCGAGGGAACGACAGGGGGAGGCCCGTGATGATGATGGAGG
AGGGGGAGGTGGGAGGGGAGGAAGGCGGGAGAGAGGGAGGGCAGGCAGCA
GTGCAAGACGTGTACTTTAAGTTGGCGACCCGAGTGGCCGAGGAGATGTT
CCGGCGATGGTACGACGGGAAAGTCGTGCCATTGGTGGAGTACAATGATA
AGAATGATGTAATTGTCATGCGCATATTCAGTAAGGAGGCTGCCAGACAG
ATCCGGCTGCGGCCAGCTGACGTCCGTTGGTCGGATCCACGGACGGGGGA
GGCATTGAAGGAGGGCGGGGAAGGAAAAGGCGCGAAGGTGACGCCAGTGA
CGTTTGAGAAGAAAGGGAATTATGGTGTGAGTGTGTTGTGGAGTGATGGG
CACTATGCCTCCATATACACGTACGAGGCGTTGGAGAGGATGGCGGCGCG
GATCGCGGCGGAGAAGGAGGAGGGAGAGAATCTAATCAAAATGAAGTGA

Synonyms

Publications