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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr16 | genome | chr16:807538..809776 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO16G02810.3 vs.
Match: EWM23828.1 (yip1 domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 392.9 bits (1008), Expect = 7.200e-106 Identity = 199/240 (82.92%), Postives = 213/240 (88.75%), Query Frame = 0
Query: 1 MSSTNDGSGDFMAPSYTESASAALLRDPETGGGQIRSEATGAGEENQPGGGGLCGCLSVRYYQPYFDVDTAHVKDRILYAIFPFNKESTFIQLLGPNPDAYGPFWVATSLIFVIAVVSNLSSYFHFDGEEGSKWTYDFAAVVTCATTIYGFAAFVPLLLWAALRYINLPLPFIQTIAIYGYSLVAFVPFTFLNFIPASAFPWLSEAAAAAASVVFLLKALGPVVTEKAPTQAVPFLAAVG 241
M+STN G GDFMAPSYTESASAALLRD ETGGGQ+RS+ATGAGE+ GGLC CLS+RYYQPYFDVDT HV DRI YA+FPF KESTFIQLLGPNPDAYGPFWVATSLIFVIAVVSN+SSYF F G EGS WTYDFAAVVTCATTIYGFAA +PLL+WAALRY+ LPLP IQT+AIYGYSLVAFVP T LNFIPA AFPWLSE AAAAASVVFLLKALGPVV EKAP A+PFLA++G
Sbjct: 1 MASTNSGEGDFMAPSYTESASAALLRDAETGGGQMRSDATGAGEDVP--AGGLCSCLSIRYYQPYFDVDTQHVVDRIKYALFPFKKESTFIQLLGPNPDAYGPFWVATSLIFVIAVVSNVSSYFQFVGTEGSAWTYDFAAVVTCATTIYGFAAIIPLLIWAALRYMQLPLPLIQTVAIYGYSLVAFVPCTLLNFIPAPAFPWLSEIAAAAASVVFLLKALGPVVMEKAPQHAMPFLASIG 238
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO16G02810.3 ID=NO16G02810.3|Name=NO16G02810.3|organism=Nannochloropsis oceanica|type=mRNA|length=1261bp
AAGGCTTGAAGTGTCCTGTGCTCTTGAATGGTACGGGTGCACATTCGGCG
GCGGGGTGAGGAGAACCATTTGTTTCTACCTGGAATCTCCATGTAGGAAT
TGGCAACGAGACACGATGCTCTGCCAAAATTTGCGTGTAACGTTCGTAAC
GGCCTCGGCCTCGTTAGGGAGTGAGTCTCTGTGGACCCGCACGCCGTAGG
GTGGGGTGTATATGTTTGCCGTCAAACAAGTCTTGGGTTTCTTTGCTCCA
CGAAGTCGTGGGGATGCGTGTCCTTGTGTGTGTGTGCGTGCCATGTGCAT
CGCGGGCACGTCACAGTCCTAGGGAAACGAAGGACAGTTGGCCGTTGCAT
TCCCTTCTTGTTGGCGAAGCCTCCTTCTCATCTCCTCATGCACCCCTTTC
GAACATGCCTGTTCAATTGCGTCCCCTTCATCTCCATGCACACACAACTC
ACAGGTCGTCAACACACTGCGGTGCCAGGCGTAGACACGCAGCATGTCGT
CAACAAACGATGGATCAGGTGACTTCATGGCACCGTCCTACACAGAGAGT
GCCTCGGCAGCCTTGCTTCGAGATCCAGAGACGGGTGGGGGGCAGATTAG
GTCAGAAGCCACAGGGGCAGGAGAGGAGAATCAACCGGGAGGCGGAGGGT
TGTGCGGCTGTCTGTCTGTCCGGTATTACCAACCTTACTTCGACGTGGAC
ACGGCGCACGTCAAGGACCGCATCCTCTATGCCATCTTCCCCTTCAATAA
GGAGTCGACTTTCATCCAGCTCCTAGGCCCCAACCCTGATGCATATGGCC
CATTCTGGGTAGCCACATCATTAATCTTTGTTATTGCCGTGGTATCCAAC
CTGAGCTCGTACTTCCACTTTGACGGGGAAGAGGGGAGCAAGTGGACCTA
TGATTTCGCGGCAGTGGTCACCTGCGCCACCACCATCTACGGCTTTGCAG
CCTTCGTCCCACTCCTCCTCTGGGCTGCTCTGCGTTACATCAATCTGCCT
CTTCCCTTCATCCAGACCATTGCCATCTACGGCTACTCCCTCGTTGCCTT
TGTGCCCTTCACGTTTCTCAACTTCATCCCCGCCTCGGCCTTCCCATGGC
TATCCGAAGCTGCTGCTGCTGCTGCTTCTGTTGTGTTCCTCCTCAAGGCC
CTCGGTCCGGTCGTGACCGAAAAAGCCCCCACACAAGCAGTGCCGTTCCT
GGCCGCGGTTGGGTAAGTAGGAGAGAGGAGAAAGACAGATGGATGGATGG
ATGGATGGATG back to topprotein sequence of NO16G02810.3 >NO16G02810.3-protein ID=NO16G02810.3-protein|Name=NO16G02810.3|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MSSTNDGSGDFMAPSYTESASAALLRDPETGGGQIRSEATGAGEENQPGG
GGLCGCLSVRYYQPYFDVDTAHVKDRILYAIFPFNKESTFIQLLGPNPDA
YGPFWVATSLIFVIAVVSNLSSYFHFDGEEGSKWTYDFAAVVTCATTIYG
FAAFVPLLLWAALRYINLPLPFIQTIAIYGYSLVAFVPFTFLNFIPASAF
PWLSEAAAAAASVVFLLKALGPVVTEKAPTQAVPFLAAVG* back to topmRNA from alignment at chr16:807538..809776- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO16G02810.3 ID=NO16G02810.3|Name=NO16G02810.3|organism=Nannochloropsis oceanica|type=mRNA|length=2239bp|location=Sequence derived from alignment at chr16:807538..809776- (Nannochloropsis oceanica)
AAGGCTTGAAGTGTCCTGTGCTCTTGAATGGTACGGGTGCACATTCGGCG
GCGGGGTGAGGAGAACCATTTGTTTCTACCTGGAATCTCCATGTAGGAAT
TGGCAACGAGACACGATGCTCTGCCAAAATTTGCGTGTAACGTTCGTAAC
GGCCTCGGCCTCGTTAGGGAGTGAGTCTCTGTGGACCCGCACGCCGTAGG
GTGGGGTGTATATGTTTGCCGTCAAACAAGTCTTGGGTTTCTTTGCTCCA
CGAAGTCGTGGGGATGCGTGTCCTTGTGTGTGTGTGCGTGCCATGTGCAT
CGCGGGCACGTCACAGTCCTAGGGAAACGAAGGACAGTTGGCCGTTGCAT
TCCCTTCTTGTTGGCGAAGCCTCCTTCTCATCTCCTCATGCACCCCTTTC
GAACATGCCTGTTCAATTGCGTCCCCTTCATCTCCATGCACACACAACTC
ACAGGTCGTCAACACACTGCGGTGCCAGGCGTAGACACGCAGCATGTCGT
CAACAAACGATGGATCAGGCAAGACTCTCCCCATAAATCCTTTCCCTTCT
CATGGAATTCACAGCAAACCCCCTCATCCTTCCTCCTCCTTCCTTCAGCA
GGTGACTTCATGGCACCGTCCTACACAGAGAGTGCCTCGGCAGCCTTGCT
TCGAGATCCAGAGACGGGTGGGGGGCAGATTAGGTCAGAAGCCACAGGGG
CAGGAGAGGAGAATCAACCGGGAGGCGGTACGTGAGGATGGAGGAGAGGA
GTAGGAGTAGGATTAGGAGAATGAGGATGAGGAGGAGGGAACCTTAATTT
CATTCTATCACAGGAGGGTTGTGCGGCTGTCTGTCTGTCCGGTATTACCA
ACCTTACTTCGACGTGGACACGGCGCACGTCAAGGACCGCATCCTCTATG
CCATCTTCCCCTTCAATAAGGAGTCGACTTTCATCCAGGTAATGGCTCTC
TTTCCCACTCTCCCTCCCTCCCTCTCTTTCTCTCTCCCTCCTCTCCTCCC
CTCCTAAGGGCCCTTATTCAACTCCTCTAAAGAGAATCTCACGTCGCTCG
TCTCTCGCGCATTATCACAACCCTTGAAAACTCTCTCATTTCTCCCATCC
CCGCCCCCCTCTCTTAGCTCCTAGGCCCCAACCCTGATGCATATGGCCCA
TTCTGGGTAGCCACATCATTAATCTTTGTTATTGCCGTGGTATCCAACCT
GAGCTCGTACTTCCACTTTGACGGGGAAGAGGGGAGCAAGTGGTGAGGGA
GGGGGAAGGGAGGGAGGGAGGGAGGGAGGAGACGAGGGAGTAAGGAGGCA
GGGTTGATTGTACGGGCACGATTCACGTGATGGCCTTCATCATCATGGGC
GCTCACCACAAACCCCCTCCCTTTCTTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCTGCAGGACCTATGATTTCGCGGCAGTGGTCACCTGCGCC
ACCACCATCTACGGCTTTGCAGTGCGTGGGGAGAAGAGGGCAGGGAGAGA
TAGATGGAGGGGATGCACAATCTCCGAATGGCCTGTCATGGAAGATAGTC
ACATCGTATTCACTTCCCGCCCCTCCCTCCCTCCCTCCCTCCCTCTCCCT
CCCTCCCTCCCTCAGGCCTTCGTCCCACTCCTCCTCTGGGCTGCTCTGCG
TTACATCAATCTGCCTCTTCCCTTCATCCAGACCATTGCCATCTACGGCT
ACTCCCTCGTTGCCTTTGTGCCCTTCACGGTAAGCTCTCCTTCCCTCCCT
CCTTCCCTCCCTTCTCCCCCCTCCTTTACTCCCTCCTTCTGCCTTGGCCT
GTGACTTGATCCATCGTCCATGGACGACTACTCACTCCTTGCCTGCTTTT
AGCGAAAGCAAGCTCTCCCTCTCTACCTCCCTCCTTCTCTCCTTTCCCCG
GCTGCCTCAAACAGCTGCTGCTGCTGCTGCCACTGCTTCTATCGTCTTCC
TCCTCTGACATCCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGTTTCTCAAC
TTCATCCCCGCCTCGGCCTTCCCATGGCTATCCGAAGCTGCTGCTGCTGC
TGCTTCTGTTGTGTTCCTCCTCAAGGCCCTCGGTCCGGTCGTGACCGAAA
AAGCCCCCACACAAGCAGTGCCGTTCCTGGCCGCGGTTGGGTAAGTAGGA
GAGAGGAGAAAGACAGATGGATGGATGGATGGATGGATG back to topCoding sequence (CDS) from alignment at chr16:807538..809776- >NO16G02810.3 ID=NO16G02810.3|Name=NO16G02810.3|organism=Nannochloropsis oceanica|type=CDS|length=723bp|location=Sequence derived from alignment at chr16:807538..809776- (Nannochloropsis oceanica)
ATGTCGTCAACAAACGATGGATCAGGTGACTTCATGGCACCGTCCTACAC
AGAGAGTGCCTCGGCAGCCTTGCTTCGAGATCCAGAGACGGGTGGGGGGC
AGATTAGGTCAGAAGCCACAGGGGCAGGAGAGGAGAATCAACCGGGAGGC
GGAGGGTTGTGCGGCTGTCTGTCTGTCCGGTATTACCAACCTTACTTCGA
CGTGGACACGGCGCACGTCAAGGACCGCATCCTCTATGCCATCTTCCCCT
TCAATAAGGAGTCGACTTTCATCCAGCTCCTAGGCCCCAACCCTGATGCA
TATGGCCCATTCTGGGTAGCCACATCATTAATCTTTGTTATTGCCGTGGT
ATCCAACCTGAGCTCGTACTTCCACTTTGACGGGGAAGAGGGGAGCAAGT
GGACCTATGATTTCGCGGCAGTGGTCACCTGCGCCACCACCATCTACGGC
TTTGCAGCCTTCGTCCCACTCCTCCTCTGGGCTGCTCTGCGTTACATCAA
TCTGCCTCTTCCCTTCATCCAGACCATTGCCATCTACGGCTACTCCCTCG
TTGCCTTTGTGCCCTTCACGTTTCTCAACTTCATCCCCGCCTCGGCCTTC
CCATGGCTATCCGAAGCTGCTGCTGCTGCTGCTTCTGTTGTGTTCCTCCT
CAAGGCCCTCGGTCCGGTCGTGACCGAAAAAGCCCCCACACAAGCAGTGC
CGTTCCTGGCCGCGGTTGGGTAA back to top
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