NO16G02810.1, NO16G02810.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO16G02810.1
Unique Name	NO16G02810.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1610
Alignment location	chr16:806893..809776 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr16	genome	chr16:806893..809776 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO16G02810.1 vs.
Match: EWM23828.1 (yip1 domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 417.5 bits (1072), Expect = 2.900e-113
Identity = 214/257 (83.27%), Postives = 229/257 (89.11%), Query Frame = 0

Query:    1 MSSTNDGSGDFMAPSYTESASAALLRDPETGGGQIRSEATGAGEENQPGGGGLCGCLSVRYYQPYFDVDTAHVKDRILYAIFPFNKESTFIQLLGPNPDAYGPFWVATSLIFVIAVVSNLSSYFHFDGEEGSKWTYDFAAVVTCATTIYGFAAFVPLLLWAALRYINLPLPFIQTIAIYGYSLVAFVPFTFLNFIPASAFPWLSEAAAAAASVVFLLKALGPVVTEKAPTQAVPFLAAVGAVQVALALTIKLAFFKN 258
            M+STN G GDFMAPSYTESASAALLRD ETGGGQ+RS+ATGAGE+     GGLC CLS+RYYQPYFDVDT HV DRI YA+FPF KESTFIQLLGPNPDAYGPFWVATSLIFVIAVVSN+SSYF F G EGS WTYDFAAVVTCATTIYGFAA +PLL+WAALRY+ LPLP IQT+AIYGYSLVAFVP T LNFIPA AFPWLSE AAAAASVVFLLKALGPVV EKAP  A+PFLA++GAVQ+ALALTIKL FFKN
Sbjct:    1 MASTNSGEGDFMAPSYTESASAALLRDAETGGGQMRSDATGAGEDVP--AGGLCSCLSIRYYQPYFDVDTQHVVDRIKYALFPFKKESTFIQLLGPNPDAYGPFWVATSLIFVIAVVSNVSSYFQFVGTEGSAWTYDFAAVVTCATTIYGFAAIIPLLIWAALRYMQLPLPLIQTVAIYGYSLVAFVPCTLLNFIPAPAFPWLSEIAAAAASVVFLLKALGPVVMEKAPQHAMPFLASIGAVQLALALTIKLVFFKN 255

The following BLAST results are available for this feature:

BLAST of NO16G02810.1 vs.

BLAST of NO16G02810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23828.1	2.900e-113	83.27	yip1 domain-containing protein [Nannochloropsis ga...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO16G02810	NO16G02810	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO16G02810.1	NO16G02810.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO16G02810.1.cds1	NO16G02810.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G02810.1.cds2	NO16G02810.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G02810.1.cds3	NO16G02810.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G02810.1.cds4	NO16G02810.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G02810.1.cds5	NO16G02810.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G02810.1.cds6	NO16G02810.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G02810.1.cds7	NO16G02810.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G02810.1.cds8	NO16G02810.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr16:806893..809776-
coding sequence from alignment at chr16:806893..809776-

mRNA sequence

>NO16G02810.1 ID=NO16G02810.1|Name=NO16G02810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1610bp
AAGGCTTGAAGTGTCCTGTGCTCTTGAATGGTACGGGTGCACATTCGGCG
GCGGGGTGAGGAGAACCATTTGTTTCTACCTGGAATCTCCATGTAGGAAT
TGGCAACGAGACACGATGCTCTGCCAAAATTTGCGTGTAACGTTCGTAAC
GGCCTCGGCCTCGTTAGGGAGTGAGTCTCTGTGGACCCGCACGCCGTAGG
GTGGGGTGTATATGTTTGCCGTCAAACAAGTCTTGGGTTTCTTTGCTCCA
CGAAGTCGTGGGGATGCGTGTCCTTGTGTGTGTGTGCGTGCCATGTGCAT
CGCGGGCACGTCACAGTCCTAGGGAAACGAAGGACAGTTGGCCGTTGCAT
TCCCTTCTTGTTGGCGAAGCCTCCTTCTCATCTCCTCATGCACCCCTTTC
GAACATGCCTGTTCAATTGCGTCCCCTTCATCTCCATGCACACACAACTC
ACAGGTCGTCAACACACTGCGGTGCCAGGCGTAGACACGCAGCATGTCGT
CAACAAACGATGGATCAGGTGACTTCATGGCACCGTCCTACACAGAGAGT
GCCTCGGCAGCCTTGCTTCGAGATCCAGAGACGGGTGGGGGGCAGATTAG
GTCAGAAGCCACAGGGGCAGGAGAGGAGAATCAACCGGGAGGCGGAGGGT
TGTGCGGCTGTCTGTCTGTCCGGTATTACCAACCTTACTTCGACGTGGAC
ACGGCGCACGTCAAGGACCGCATCCTCTATGCCATCTTCCCCTTCAATAA
GGAGTCGACTTTCATCCAGCTCCTAGGCCCCAACCCTGATGCATATGGCC
CATTCTGGGTAGCCACATCATTAATCTTTGTTATTGCCGTGGTATCCAAC
CTGAGCTCGTACTTCCACTTTGACGGGGAAGAGGGGAGCAAGTGGACCTA
TGATTTCGCGGCAGTGGTCACCTGCGCCACCACCATCTACGGCTTTGCAG
CCTTCGTCCCACTCCTCCTCTGGGCTGCTCTGCGTTACATCAATCTGCCT
CTTCCCTTCATCCAGACCATTGCCATCTACGGCTACTCCCTCGTTGCCTT
TGTGCCCTTCACGTTTCTCAACTTCATCCCCGCCTCGGCCTTCCCATGGC
TATCCGAAGCTGCTGCTGCTGCTGCTTCTGTTGTGTTCCTCCTCAAGGCC
CTCGGTCCGGTCGTGACCGAAAAAGCCCCCACACAAGCAGTGCCGTTCCT
GGCCGCGGTTGGGGCGGTGCAGGTGGCCTTGGCCTTGACGATTAAGCTTG
CCTTTTTCAAAAATTAAGGAGCAGACGCAATGCATGTAATGTTTACCGCC
GAACACGCACGAGTGACACGAGGTGACGAGGGAAAGAGGAGGAATTCAAG
AAGAAGAGGTGTGAGAGTAGAGGGGGAAGCAGAGGGAAAGAGGGAACCAA
GATGATGAGGAGGAACAGAGAGACGGTAATCCTCGGCATTCGACCCTGTA
CGTGCGAGAGGAAAATATCGACGCGGTATGACAAACACACCCACCCCTTG
GGGTGAGTGAAAGAAGAGCAAGTACGGATGGGAATGGGATTGCGTGGGAT
AGAAAGGAGCAGGAGCCGGTGGAGGAGGATGGAGGGAGGGGAGGATGGAG
GGAGGGAGGG

protein sequence of NO16G02810.1

>NO16G02810.1-protein ID=NO16G02810.1-protein|Name=NO16G02810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MSSTNDGSGDFMAPSYTESASAALLRDPETGGGQIRSEATGAGEENQPGG
GGLCGCLSVRYYQPYFDVDTAHVKDRILYAIFPFNKESTFIQLLGPNPDA
YGPFWVATSLIFVIAVVSNLSSYFHFDGEEGSKWTYDFAAVVTCATTIYG
FAAFVPLLLWAALRYINLPLPFIQTIAIYGYSLVAFVPFTFLNFIPASAF
PWLSEAAAAAASVVFLLKALGPVVTEKAPTQAVPFLAAVGAVQVALALTI
KLAFFKN*

mRNA from alignment at chr16:806893..809776-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO16G02810.1 ID=NO16G02810.1|Name=NO16G02810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2884bp|location=Sequence derived from alignment at chr16:806893..809776- (Nannochloropsis oceanica)
AAGGCTTGAAGTGTCCTGTGCTCTTGAATGGTACGGGTGCACATTCGGCG
GCGGGGTGAGGAGAACCATTTGTTTCTACCTGGAATCTCCATGTAGGAAT
TGGCAACGAGACACGATGCTCTGCCAAAATTTGCGTGTAACGTTCGTAAC
GGCCTCGGCCTCGTTAGGGAGTGAGTCTCTGTGGACCCGCACGCCGTAGG
GTGGGGTGTATATGTTTGCCGTCAAACAAGTCTTGGGTTTCTTTGCTCCA
CGAAGTCGTGGGGATGCGTGTCCTTGTGTGTGTGTGCGTGCCATGTGCAT
CGCGGGCACGTCACAGTCCTAGGGAAACGAAGGACAGTTGGCCGTTGCAT
TCCCTTCTTGTTGGCGAAGCCTCCTTCTCATCTCCTCATGCACCCCTTTC
GAACATGCCTGTTCAATTGCGTCCCCTTCATCTCCATGCACACACAACTC
ACAGGTCGTCAACACACTGCGGTGCCAGGCGTAGACACGCAGCATGTCGT
CAACAAACGATGGATCAGGCAAGACTCTCCCCATAAATCCTTTCCCTTCT
CATGGAATTCACAGCAAACCCCCTCATCCTTCCTCCTCCTTCCTTCAGCA
GGTGACTTCATGGCACCGTCCTACACAGAGAGTGCCTCGGCAGCCTTGCT
TCGAGATCCAGAGACGGGTGGGGGGCAGATTAGGTCAGAAGCCACAGGGG
CAGGAGAGGAGAATCAACCGGGAGGCGGTACGTGAGGATGGAGGAGAGGA
GTAGGAGTAGGATTAGGAGAATGAGGATGAGGAGGAGGGAACCTTAATTT
CATTCTATCACAGGAGGGTTGTGCGGCTGTCTGTCTGTCCGGTATTACCA
ACCTTACTTCGACGTGGACACGGCGCACGTCAAGGACCGCATCCTCTATG
CCATCTTCCCCTTCAATAAGGAGTCGACTTTCATCCAGGTAATGGCTCTC
TTTCCCACTCTCCCTCCCTCCCTCTCTTTCTCTCTCCCTCCTCTCCTCCC
CTCCTAAGGGCCCTTATTCAACTCCTCTAAAGAGAATCTCACGTCGCTCG
TCTCTCGCGCATTATCACAACCCTTGAAAACTCTCTCATTTCTCCCATCC
CCGCCCCCCTCTCTTAGCTCCTAGGCCCCAACCCTGATGCATATGGCCCA
TTCTGGGTAGCCACATCATTAATCTTTGTTATTGCCGTGGTATCCAACCT
GAGCTCGTACTTCCACTTTGACGGGGAAGAGGGGAGCAAGTGGTGAGGGA
GGGGGAAGGGAGGGAGGGAGGGAGGGAGGAGACGAGGGAGTAAGGAGGCA
GGGTTGATTGTACGGGCACGATTCACGTGATGGCCTTCATCATCATGGGC
GCTCACCACAAACCCCCTCCCTTTCTTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCTGCAGGACCTATGATTTCGCGGCAGTGGTCACCTGCGCC
ACCACCATCTACGGCTTTGCAGTGCGTGGGGAGAAGAGGGCAGGGAGAGA
TAGATGGAGGGGATGCACAATCTCCGAATGGCCTGTCATGGAAGATAGTC
ACATCGTATTCACTTCCCGCCCCTCCCTCCCTCCCTCCCTCCCTCTCCCT
CCCTCCCTCCCTCAGGCCTTCGTCCCACTCCTCCTCTGGGCTGCTCTGCG
TTACATCAATCTGCCTCTTCCCTTCATCCAGACCATTGCCATCTACGGCT
ACTCCCTCGTTGCCTTTGTGCCCTTCACGGTAAGCTCTCCTTCCCTCCCT
CCTTCCCTCCCTTCTCCCCCCTCCTTTACTCCCTCCTTCTGCCTTGGCCT
GTGACTTGATCCATCGTCCATGGACGACTACTCACTCCTTGCCTGCTTTT
AGCGAAAGCAAGCTCTCCCTCTCTACCTCCCTCCTTCTCTCCTTTCCCCG
GCTGCCTCAAACAGCTGCTGCTGCTGCTGCCACTGCTTCTATCGTCTTCC
TCCTCTGACATCCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGTTTCTCAAC
TTCATCCCCGCCTCGGCCTTCCCATGGCTATCCGAAGCTGCTGCTGCTGC
TGCTTCTGTTGTGTTCCTCCTCAAGGCCCTCGGTCCGGTCGTGACCGAAA
AAGCCCCCACACAAGCAGTGCCGTTCCTGGCCGCGGTTGGGTAAGTAGGA
GAGAGGAGAAAGACAGATGGATGGATGGATGGATGGATGGATGGATGGAT
GGATGGAGGGATGGATTGAGGGATTGATGGATGGAGGGATTGATGGATAT
ATTGATGGATGGAGGGATTGATGGAGGGAGTGTCGATTCAGTTAAAGGAT
GAGATCTTCAGTCTAGGACAGTTAGAAATTCACCTCCAAGGCCATCTCCC
ACATTTTACGCAAACCCCTCCCTCCTTCATTCCCTCCCTCCTCCTCTCCC
TCCTTCCCTTCCTCCTTCCCTCCCTCCTTTATTTAGGGCGGTGCAGGTGG
CCTTGGCCTTGACGATTAAGCTTGCCTTTTTCAAAAATTAAGGAGCAGAC
GCAATGCATGTAATGTTTACCGCCGAACACGCACGAGTGACACGAGGTGA
CGAGGGAAAGAGGAGGAATTCAAGAAGAAGAGGTGTGAGAGTAGAGGGGG
AAGCAGAGGGAAAGAGGGAACCAAGATGATGAGGAGGAACAGAGAGACGG
TAATCCTCGGCATTCGACCCTGTACGTGCGAGAGGAAAATATCGACGCGG
TATGACAAACACACCCACCCCTTGGGGTGAGTGAAAGAAGAGCAAGTACG
GATGGGAATGGGATTGCGTGGGATAGAAAGGAGCAGGAGCCGGTGGAGGA
GGATGGAGGGAGGGGAGGATGGAGGGAGGGAGGG

Coding sequence (CDS) from alignment at chr16:806893..809776-

>NO16G02810.1 ID=NO16G02810.1|Name=NO16G02810.1|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at chr16:806893..809776- (Nannochloropsis oceanica)
ATGTCGTCAACAAACGATGGATCAGGTGACTTCATGGCACCGTCCTACAC
AGAGAGTGCCTCGGCAGCCTTGCTTCGAGATCCAGAGACGGGTGGGGGGC
AGATTAGGTCAGAAGCCACAGGGGCAGGAGAGGAGAATCAACCGGGAGGC
GGAGGGTTGTGCGGCTGTCTGTCTGTCCGGTATTACCAACCTTACTTCGA
CGTGGACACGGCGCACGTCAAGGACCGCATCCTCTATGCCATCTTCCCCT
TCAATAAGGAGTCGACTTTCATCCAGCTCCTAGGCCCCAACCCTGATGCA
TATGGCCCATTCTGGGTAGCCACATCATTAATCTTTGTTATTGCCGTGGT
ATCCAACCTGAGCTCGTACTTCCACTTTGACGGGGAAGAGGGGAGCAAGT
GGACCTATGATTTCGCGGCAGTGGTCACCTGCGCCACCACCATCTACGGC
TTTGCAGCCTTCGTCCCACTCCTCCTCTGGGCTGCTCTGCGTTACATCAA
TCTGCCTCTTCCCTTCATCCAGACCATTGCCATCTACGGCTACTCCCTCG
TTGCCTTTGTGCCCTTCACGTTTCTCAACTTCATCCCCGCCTCGGCCTTC
CCATGGCTATCCGAAGCTGCTGCTGCTGCTGCTTCTGTTGTGTTCCTCCT
CAAGGCCCTCGGTCCGGTCGTGACCGAAAAAGCCCCCACACAAGCAGTGC
CGTTCCTGGCCGCGGTTGGGGCGGTGCAGGTGGCCTTGGCCTTGACGATT
AAGCTTGCCTTTTTCAAAAATTAA

Synonyms

Publications