NO16G02760.1, NO16G02760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02760.1
Unique NameNO16G02760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3369
Alignment locationchr16:793265..796747 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:793265..796747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02760.1 vs.
Match: EWM23834.1 (Thioredoxin superfamily protein [Nannochloropsis gaditana])

HSP 1 Score: 270.0 bits (689), Expect = 6.800e-69
Identity = 141/220 (64.09%), Postives = 164/220 (74.55%), Query Frame = 0 
Query:   11 SLLLLSLLLHLSLVPAARAAD-PPALPLTASEYSVVILGEPSSSARVDFFLDLVCVDTKNAWPVIKEVIEMYGRDVQWRFHQFPLPYHTNAFLVAKGAVIAALYANDTAALDYMDVAFDRQSDVLNEETKDMSYAEVSERVQGWVRETTGLSDKRVKQGLELGEVEEAVRVSFKYAAIRSVFGTPMFMINQIMVPGLDSESGLQDWKMYLEPLLARAERK 230
            SLLL SLLL     P    A  PPALPL+ASEYSVV LG+ SS   VD FLDLVC+DTK AWPVIK+VI+ Y R VQWRFHQFPLPYHTNAF+VAKGAV+AA Y NDTAAL YMD+AF RQ  V NE T+ M+Y  V   V  WV+E TGL  + V++ L+ G VEEAVR SFKYA IRS+FGTPMF+INQ++VPGLD  S + DW+ YL PLL +  R+
Sbjct:   18 SLLLASLLLAAGHFPRTGVATAPPALPLSASEYSVVTLGDSSSGVDVDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLEREVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQMARE 237
The following BLAST results are available for this feature:
BLAST of NO16G02760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
50010001500200025003000SequenceEWM23834.1
Match NameE-valueIdentityDescription
EWM23834.16.800e-6964.09Thioredoxin superfamily protein [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02760NO16G02760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02760.1NO16G02760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02760.1.cds1NO16G02760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02760.1.cds2NO16G02760.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02760.1 ID=NO16G02760.1|Name=NO16G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=3369bp
TCCTTAGTTGAAGCTTTGCTTCACTTCATTTTTCTTCTTTTTCTGTTGTG
TGTGTACGGTCATCTTTCCCTCCTGTTTGCCTGTTCTTCTCTTCCCCTCT
GCAGGCCTTTAGTTCCGTACGCAAAATATAAAATTACGTCATCCTTCCTC
ACTCCCCTAGCTTTCTTCCATCTTCCCTTCTTGCCCTCCAATTACAGCTC
TTCTTTATCCTCGTCCTCTTCCTCTTCCCCTTCCTCCTCTTCCCCTCCGC
CCGCCATGATCCTCCTTCTTCTTTCGGCCTCCTCCTTAGCCTCTTGCCAC
ACTTCTTCCATCAATGCATCGTGCTCCAGTGCCTCCTCCTTCCCTTCCTC
CTGTTCCTCCCCACCCTCCATACGCACATGTCTCTCCCTCTCCTCCCTCA
CGGCTTCCTTCAACTCCTCCAACACACCGATACCTCCCTCCCCACTCTCC
TCCGCCGCCGGTTGAGAAATCGAGCTCAGGTAGCCCCCCCAAGCAATTGA
CATGAAGGTGTTAAACAGCGGCCGATGGCTCGCAGGCACGTAGGCATATA
AAATCGTGTCATACACCGGCCACACTTGCAAAGACCGCAACCACGTCAGC
AAAAAGCGCTTTCGAAACTTCTCCGGCAGCTTGGCAAAGCGCTTCTTCCA
CCCTACCCCTCCGTCCAACGCTGCGGTCAAAACCATCATAGACGCGATCT
TATAAACCCCGATGGTCGGCCATTCGATCCAATACTTGGCCCAGGCCACA
CATAGCTTGTAGTACGTCCCCTCGGCCTTCCCGAATCGCTCCTCTGTAAA
TAAGTGGTACGGGAACCGACGATCGATGTATTTGTAGTAGCTGTAGTGGA
TCAGCCCATTGTTCAAGGCGCCGATCAAGCCGGACCTCACAGCGCGCCAG
GCCTTTACCCCCACCTTCTTCACGCCCCTCAAGCCCCCCTGCTCCAAGAT
CTGAAAGTACGTATCGCCTGCCAGGCACAGAATGAACCCCTGGACAACAT
TGAAACTAATCGGAAAATTCTGCAGCAATGGTGTGAAGATGATGGCCGCA
ATGTCCATACCAAACAAGGCAGTGGCCCCTGCGGCGATCACGGCCGGGTT
TCCAGCGATCTTGCCCTTGTAGTATGGCGTGACGCGCGGTTTTTGAACTT
TCAAACGACACGACTCCGAGAATGTGGCGTCGAGGAATCGGTACTTGTAG
TGGCAGTGACTCACGGGCTCGCACCGACGGATGCGATAATCGAAGAAGCA
GCCATCGTCGGAGGTGGGGATGGAGGACGCGGTGAGGTTGGTCTTTTTCC
CGACCGTGTCGGGCAGGAGGAGAAGGGAGACGAGTAAGGAAAGAAGCAGG
GAGAGGGAGGAGATAAGTCTGGTGGAGCCTCCTTGAATAGCCATGGTGAC
AGTGGTGTGGCAGTACTGCTGGTACAAGCGGAGCTAGTGTCGCTCTTGCT
ATTGCTCGAGCCTGCTACTACTGCTACTAGTGCGGCTGCTGATGCGGCTG
CAGGTGCAGATGCTAAGAGTCGATCACCTCCCTTCTGTCGTCGTAAATAA
GAGTAGACAATGATGTGCCTGGCCCTCCTCGTGTTGGCGGCAGTCCCTGC
TGTTGTCATGTCATGAAGGGAATAGGGTTAGCGAGGACGTGTCGTGGTGT
GCGCGAGAAAAGGAAGAAATGTGAAATGTTTTCCCCTCCTCACGGCTGGC
AGCAAAGCCAGCTACCAGCCTGTCGCAGCACAGTGCGCCCACACCAATGT
CCGTCGTGCAGTGGGGCGCCTGGGACCTAGGGTATTTAGGGTGGTGTTGG
CTCACGGTCACGGATTTGTGATCATCGCCGCTTCCTGTCTTCAACCACAA
GCAGGGCCAAAAGCAGAGTTCGACAAACGCAGTGGACCGTTTTGACTGAC
CCACACAACCCTTGACAATGAGACGACCAGCCTCGTTACGGGCGTCTTGT
GTTATGTTCGCTCTGCATGTGGTGAGGCGGCGTGAGACGTGAAGGCAAAA
GGAAAAGAGGGAGGCCATGGCGCGAAGAGCTGAAGCGGGGCCAAACGGAG
CCTTGCAGCTTCTTCCTCCTCTGCCCTGCCCTGGGATTGTCGCACGCACG
CTCGTCGCAAGCTAGATGGCTAAACTGCGGTAATCACATTGGCATGAGCA
GAGCGTGGTCACGCCTCTGTCCTTTCCGCAGGCCCGCATCATCTTTTTTA
GCAACCGACAACTTTCCTCTCACTTGCCCCCTTCCAGTTGGGAGCCCAAC
CTCTCTCCACAGCACACAGATCTGCACCCTACAAGCTCTCTCAAGACCAC
CTTCAGCATGGAAACCGCCTACGCCTTTCGCCTTTTTTCCCTCCTCCTGC
TCTCCCTCCTTCTTCACCTATCCCTCGTCCCCGCCGCCCGCGCGGCAGAT
CCTCCTGCCTTGCCCTTGACCGCCTCGGAGTACAGCGTCGTGATCCTCGG
TGAGCCTTCCTCCAGCGCGCGCGTCGATTTCTTCCTGGATCTCGTCTGTG
TCGACACAAAAAATGCCTGGCCTGTGATTAAGGAGGTGATTGAGATGTAT
GGCCGGGACGTGCAATGGCGCTTTCATCAGTTTCCTCTGCCATACCATAC
CAATGCTTTCTTGGTCGCTAAAGGAGCCGTTATCGCCGCCCTCTATGCCA
ACGACACTGCCGCCCTTGACTACATGGACGTCGCTTTCGACCGCCAATCG
GACGTGTTGAATGAAGAAACAAAAGACATGAGTTACGCCGAAGTAAGTGA
GCGCGTTCAAGGCTGGGTTCGCGAAACTACCGGGCTAAGCGACAAGAGAG
TCAAGCAGGGCCTGGAATTGGGCGAGGTAGAGGAAGCTGTTCGGGTTTCA
TTCAAGTACGCGGCGATCCGCTCCGTGTTTGGGACGCCAATGTTTATGAT
AAACCAGATTATGGTTCCCGGTTTAGACAGTGAGAGTGGGTTGCAAGACT
GGAAGATGTACCTGGAGCCCTTGTTGGCGCGCGCGGAACGCAAAGACTGA
GCTTGAGATCTCTCAGTATCCAGGAGTGTCAGAGTACGTTTGTTTGTTTG
AATCTCATTCTGAATCCTGAGGACAGTGGGGGGGAGAGTACACGAAAAGA
CTCGATGCCTGGGGCAAGTGCGGGCGACCGTGCACAGCGAAGTATTTTTT
CGCACACGTGCAGACCCCTCGAAATATATGAAAGTTCGCCCGTTGGTTTG
TGGACAATCAGGAGGGGAAACGATGCAAATGGAGAATATAGATGTGTGTA
AATAATTAGGTCAGGAAGTGTTAAGGCGGAGAGCCCGCACAACGTGTACA
TACCGCCATTTGTAGGGGAACCAAATGAATTCAGGATAAGACAAGAAAGA
GGATCGGATAAACCTGGAC
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protein sequence of NO16G02760.1

>NO16G02760.1-protein ID=NO16G02760.1-protein|Name=NO16G02760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
METAYAFRLFSLLLLSLLLHLSLVPAARAADPPALPLTASEYSVVILGEP
SSSARVDFFLDLVCVDTKNAWPVIKEVIEMYGRDVQWRFHQFPLPYHTNA
FLVAKGAVIAALYANDTAALDYMDVAFDRQSDVLNEETKDMSYAEVSERV
QGWVRETTGLSDKRVKQGLELGEVEEAVRVSFKYAAIRSVFGTPMFMINQ
IMVPGLDSESGLQDWKMYLEPLLARAERKD*
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mRNA from alignment at chr16:793265..796747+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02760.1 ID=NO16G02760.1|Name=NO16G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=3483bp|location=Sequence derived from alignment at chr16:793265..796747+ (Nannochloropsis oceanica)
TCCTTAGTTGAAGCTTTGCTTCACTTCATTTTTCTTCTTTTTCTGTTGTG
TGTGTACGGTCATCTTTCCCTCCTGTTTGCCTGTTCTTCTCTTCCCCTCT
GCAGGCCTTTAGTTCCGTACGCAAAATATAAAATTACGTCATCCTTCCTC
ACTCCCCTAGCTTTCTTCCATCTTCCCTTCTTGCCCTCCAATTACAGCTC
TTCTTTATCCTCGTCCTCTTCCTCTTCCCCTTCCTCCTCTTCCCCTCCGC
CCGCCATGATCCTCCTTCTTCTTTCGGCCTCCTCCTTAGCCTCTTGCCAC
ACTTCTTCCATCAATGCATCGTGCTCCAGTGCCTCCTCCTTCCCTTCCTC
CTGTTCCTCCCCACCCTCCATACGCACATGTCTCTCCCTCTCCTCCCTCA
CGGCTTCCTTCAACTCCTCCAACACACCGATACCTCCCTCCCCACTCTCC
TCCGCCGCCGGTTGAGAAATCGAGCTCAGGTAGCCCCCCCAAGCAATTGA
CATGAAGGTGTTAAACAGCGGCCGATGGCTCGCAGGCACGTAGGCATATA
AAATCGTGTCATACACCGGCCACACTTGCAAAGACCGCAACCACGTCAGC
AAAAAGCGCTTTCGAAACTTCTCCGGCAGCTTGGCAAAGCGCTTCTTCCA
CCCTACCCCTCCGTCCAACGCTGCGGTCAAAACCATCATAGACGCGATCT
TATAAACCCCGATGGTCGGCCATTCGATCCAATACTTGGCCCAGGCCACA
CATAGCTTGTAGTACGTCCCCTCGGCCTTCCCGAATCGCTCCTCTGTAAA
TAAGTGGTACGGGAACCGACGATCGATGTATTTGTAGTAGCTGTAGTGGA
TCAGCCCATTGTTCAAGGCGCCGATCAAGCCGGACCTCACAGCGCGCCAG
GCCTTTACCCCCACCTTCTTCACGCCCCTCAAGCCCCCCTGCTCCAAGAT
CTGAAAGTACGTATCGCCTGCCAGGCACAGAATGAACCCCTGGACAACAT
TGAAACTAATCGGAAAATTCTGCAGCAATGGTGTGAAGATGATGGCCGCA
ATGTCCATACCAAACAAGGCAGTGGCCCCTGCGGCGATCACGGCCGGGTT
TCCAGCGATCTTGCCCTTGTAGTATGGCGTGACGCGCGGTTTTTGAACTT
TCAAACGACACGACTCCGAGAATGTGGCGTCGAGGAATCGGTACTTGTAG
TGGCAGTGACTCACGGGCTCGCACCGACGGATGCGATAATCGAAGAAGCA
GCCATCGTCGGAGGTGGGGATGGAGGACGCGGTGAGGTTGGTCTTTTTCC
CGACCGTGTCGGGCAGGAGGAGAAGGGAGACGAGTAAGGAAAGAAGCAGG
GAGAGGGAGGAGATAAGTCTGGTGGAGCCTCCTTGAATAGCCATGGTGAC
AGTGGTGTGGCAGTACTGCTGGTACAAGCGGAGCTAGTGTCGCTCTTGCT
ATTGCTCGAGCCTGCTACTACTGCTACTAGTGCGGCTGCTGATGCGGCTG
CAGGTGCAGATGCTAAGAGTCGATCACCTCCCTTCTGTCGTCGTAAATAA
GAGTAGACAATGATGTGCCTGGCCCTCCTCGTGTTGGCGGCAGTCCCTGC
TGTTGTCATGTCATGAAGGGAATAGGGTTAGCGAGGACGTGTCGTGGTGT
GCGCGAGAAAAGGAAGAAATGTGAAATGTTTTCCCCTCCTCACGGCTGGC
AGCAAAGCCAGCTACCAGCCTGTCGCAGCACAGTGCGCCCACACCAATGT
CCGTCGTGCAGTGGGGCGCCTGGGACCTAGGGTATTTAGGGTGGTGTTGG
CTCACGGTCACGGATTTGTGATCATCGCCGCTTCCTGTCTTCAACCACAA
GCAGGGCCAAAAGCAGAGTTCGACAAACGCAGTGGACCGTTTTGACTGAC
CCACACAACCCTTGACAATGAGACGACCAGCCTCGTTACGGGCGTCTTGT
GTTATGTTCGCTCTGCATGTGGTGAGGCGGCGTGAGACGTGAAGGCAAAA
GGAAAAGAGGGAGGCCATGGCGCGAAGAGCTGAAGCGGGGCCAAACGGAG
CCTTGCAGCTTCTTCCTCCTCTGCCCTGCCCTGGGATTGTCGCACGCACG
CTCGTCGCAAGCTAGATGGCTAAACTGCGGTAATCACATTGGCATGAGCA
GAGCGTGGTCACGCCTCTGTCCTTTCCGCAGGCCCGCATCATCTTTTTTA
GCAACCGACAACTTTCCTCTCACTTGCCCCCTTCCAGTTGGGAGCCCAAC
CTCTCTCCACAGCACACAGATCTGCACCCTACAAGCTCTCTCAAGACCAC
CTTCAGCATGGAAACCGCCTACGCCTTTCGCCTTTTTTCCCTCCTCCTGC
TCTCCCTCCTTCTTCACCTATCCCTCGTCCCCGCCGCCCGCGCGGCAGAT
CCTCCTGCCTTGCCCTTGACCGCCTCGGAGTACAGCGTCGTGATCCTCGG
TGAGCCTTCCTCCAGCGCGCGCGTCGATTTCTTCCTGGATCTCGTCTGTG
TCGACACAAAAAATGCCTGGCCTGTGATTAAGGAGGTGATTGAGATGTAT
GGCCGGGACGTGCAATGGCGCTTTCATCAGTTTCCTCTGCCATACCATAC
CAATGCTTTCTTGGGTGAGTGCTGTTTGCCTCTTGCATTTCACAAGCCTC
CTCGCCCATCGCGTGAACTCGCAAAGCAAAAATTGACTCATATTTTCCTG
TCAACTTTCCTTCCTCCCCTCCCTCCAGTCGCTAAAGGAGCCGTTATCGC
CGCCCTCTATGCCAACGACACTGCCGCCCTTGACTACATGGACGTCGCTT
TCGACCGCCAATCGGACGTGTTGAATGAAGAAACAAAAGACATGAGTTAC
GCCGAAGTAAGTGAGCGCGTTCAAGGCTGGGTTCGCGAAACTACCGGGCT
AAGCGACAAGAGAGTCAAGCAGGGCCTGGAATTGGGCGAGGTAGAGGAAG
CTGTTCGGGTTTCATTCAAGTACGCGGCGATCCGCTCCGTGTTTGGGACG
CCAATGTTTATGATAAACCAGATTATGGTTCCCGGTTTAGACAGTGAGAG
TGGGTTGCAAGACTGGAAGATGTACCTGGAGCCCTTGTTGGCGCGCGCGG
AACGCAAAGACTGAGCTTGAGATCTCTCAGTATCCAGGAGTGTCAGAGTA
CGTTTGTTTGTTTGAATCTCATTCTGAATCCTGAGGACAGTGGGGGGGAG
AGTACACGAAAAGACTCGATGCCTGGGGCAAGTGCGGGCGACCGTGCACA
GCGAAGTATTTTTTCGCACACGTGCAGACCCCTCGAAATATATGAAAGTT
CGCCCGTTGGTTTGTGGACAATCAGGAGGGGAAACGATGCAAATGGAGAA
TATAGATGTGTGTAAATAATTAGGTCAGGAAGTGTTAAGGCGGAGAGCCC
GCACAACGTGTACATACCGCCATTTGTAGGGGAACCAAATGAATTCAGGA
TAAGACAAGAAAGAGGATCGGATAAACCTGGAC
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Coding sequence (CDS) from alignment at chr16:793265..796747+

>NO16G02760.1 ID=NO16G02760.1|Name=NO16G02760.1|organism=Nannochloropsis oceanica|type=CDS|length=693bp|location=Sequence derived from alignment at chr16:793265..796747+ (Nannochloropsis oceanica)
ATGGAAACCGCCTACGCCTTTCGCCTTTTTTCCCTCCTCCTGCTCTCCCT
CCTTCTTCACCTATCCCTCGTCCCCGCCGCCCGCGCGGCAGATCCTCCTG
CCTTGCCCTTGACCGCCTCGGAGTACAGCGTCGTGATCCTCGGTGAGCCT
TCCTCCAGCGCGCGCGTCGATTTCTTCCTGGATCTCGTCTGTGTCGACAC
AAAAAATGCCTGGCCTGTGATTAAGGAGGTGATTGAGATGTATGGCCGGG
ACGTGCAATGGCGCTTTCATCAGTTTCCTCTGCCATACCATACCAATGCT
TTCTTGGTCGCTAAAGGAGCCGTTATCGCCGCCCTCTATGCCAACGACAC
TGCCGCCCTTGACTACATGGACGTCGCTTTCGACCGCCAATCGGACGTGT
TGAATGAAGAAACAAAAGACATGAGTTACGCCGAAGTAAGTGAGCGCGTT
CAAGGCTGGGTTCGCGAAACTACCGGGCTAAGCGACAAGAGAGTCAAGCA
GGGCCTGGAATTGGGCGAGGTAGAGGAAGCTGTTCGGGTTTCATTCAAGT
ACGCGGCGATCCGCTCCGTGTTTGGGACGCCAATGTTTATGATAAACCAG
ATTATGGTTCCCGGTTTAGACAGTGAGAGTGGGTTGCAAGACTGGAAGAT
GTACCTGGAGCCCTTGTTGGCGCGCGCGGAACGCAAAGACTGA
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Synonyms
Publications