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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr16 | genome | chr16:793265..796747 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO16G02760.1 vs.
Match: EWM23834.1 (Thioredoxin superfamily protein [Nannochloropsis gaditana]) HSP 1 Score: 270.0 bits (689), Expect = 6.800e-69 Identity = 141/220 (64.09%), Postives = 164/220 (74.55%), Query Frame = 0
Query: 11 SLLLLSLLLHLSLVPAARAAD-PPALPLTASEYSVVILGEPSSSARVDFFLDLVCVDTKNAWPVIKEVIEMYGRDVQWRFHQFPLPYHTNAFLVAKGAVIAALYANDTAALDYMDVAFDRQSDVLNEETKDMSYAEVSERVQGWVRETTGLSDKRVKQGLELGEVEEAVRVSFKYAAIRSVFGTPMFMINQIMVPGLDSESGLQDWKMYLEPLLARAERK 230
SLLL SLLL P A PPALPL+ASEYSVV LG+ SS VD FLDLVC+DTK AWPVIK+VI+ Y R VQWRFHQFPLPYHTNAF+VAKGAV+AA Y NDTAAL YMD+AF RQ V NE T+ M+Y V V WV+E TGL + V++ L+ G VEEAVR SFKYA IRS+FGTPMF+INQ++VPGLD S + DW+ YL PLL + R+
Sbjct: 18 SLLLASLLLAAGHFPRTGVATAPPALPLSASEYSVVTLGDSSSGVDVDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLEREVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQMARE 237
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO16G02760.1 ID=NO16G02760.1|Name=NO16G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=3369bp
TCCTTAGTTGAAGCTTTGCTTCACTTCATTTTTCTTCTTTTTCTGTTGTG
TGTGTACGGTCATCTTTCCCTCCTGTTTGCCTGTTCTTCTCTTCCCCTCT
GCAGGCCTTTAGTTCCGTACGCAAAATATAAAATTACGTCATCCTTCCTC
ACTCCCCTAGCTTTCTTCCATCTTCCCTTCTTGCCCTCCAATTACAGCTC
TTCTTTATCCTCGTCCTCTTCCTCTTCCCCTTCCTCCTCTTCCCCTCCGC
CCGCCATGATCCTCCTTCTTCTTTCGGCCTCCTCCTTAGCCTCTTGCCAC
ACTTCTTCCATCAATGCATCGTGCTCCAGTGCCTCCTCCTTCCCTTCCTC
CTGTTCCTCCCCACCCTCCATACGCACATGTCTCTCCCTCTCCTCCCTCA
CGGCTTCCTTCAACTCCTCCAACACACCGATACCTCCCTCCCCACTCTCC
TCCGCCGCCGGTTGAGAAATCGAGCTCAGGTAGCCCCCCCAAGCAATTGA
CATGAAGGTGTTAAACAGCGGCCGATGGCTCGCAGGCACGTAGGCATATA
AAATCGTGTCATACACCGGCCACACTTGCAAAGACCGCAACCACGTCAGC
AAAAAGCGCTTTCGAAACTTCTCCGGCAGCTTGGCAAAGCGCTTCTTCCA
CCCTACCCCTCCGTCCAACGCTGCGGTCAAAACCATCATAGACGCGATCT
TATAAACCCCGATGGTCGGCCATTCGATCCAATACTTGGCCCAGGCCACA
CATAGCTTGTAGTACGTCCCCTCGGCCTTCCCGAATCGCTCCTCTGTAAA
TAAGTGGTACGGGAACCGACGATCGATGTATTTGTAGTAGCTGTAGTGGA
TCAGCCCATTGTTCAAGGCGCCGATCAAGCCGGACCTCACAGCGCGCCAG
GCCTTTACCCCCACCTTCTTCACGCCCCTCAAGCCCCCCTGCTCCAAGAT
CTGAAAGTACGTATCGCCTGCCAGGCACAGAATGAACCCCTGGACAACAT
TGAAACTAATCGGAAAATTCTGCAGCAATGGTGTGAAGATGATGGCCGCA
ATGTCCATACCAAACAAGGCAGTGGCCCCTGCGGCGATCACGGCCGGGTT
TCCAGCGATCTTGCCCTTGTAGTATGGCGTGACGCGCGGTTTTTGAACTT
TCAAACGACACGACTCCGAGAATGTGGCGTCGAGGAATCGGTACTTGTAG
TGGCAGTGACTCACGGGCTCGCACCGACGGATGCGATAATCGAAGAAGCA
GCCATCGTCGGAGGTGGGGATGGAGGACGCGGTGAGGTTGGTCTTTTTCC
CGACCGTGTCGGGCAGGAGGAGAAGGGAGACGAGTAAGGAAAGAAGCAGG
GAGAGGGAGGAGATAAGTCTGGTGGAGCCTCCTTGAATAGCCATGGTGAC
AGTGGTGTGGCAGTACTGCTGGTACAAGCGGAGCTAGTGTCGCTCTTGCT
ATTGCTCGAGCCTGCTACTACTGCTACTAGTGCGGCTGCTGATGCGGCTG
CAGGTGCAGATGCTAAGAGTCGATCACCTCCCTTCTGTCGTCGTAAATAA
GAGTAGACAATGATGTGCCTGGCCCTCCTCGTGTTGGCGGCAGTCCCTGC
TGTTGTCATGTCATGAAGGGAATAGGGTTAGCGAGGACGTGTCGTGGTGT
GCGCGAGAAAAGGAAGAAATGTGAAATGTTTTCCCCTCCTCACGGCTGGC
AGCAAAGCCAGCTACCAGCCTGTCGCAGCACAGTGCGCCCACACCAATGT
CCGTCGTGCAGTGGGGCGCCTGGGACCTAGGGTATTTAGGGTGGTGTTGG
CTCACGGTCACGGATTTGTGATCATCGCCGCTTCCTGTCTTCAACCACAA
GCAGGGCCAAAAGCAGAGTTCGACAAACGCAGTGGACCGTTTTGACTGAC
CCACACAACCCTTGACAATGAGACGACCAGCCTCGTTACGGGCGTCTTGT
GTTATGTTCGCTCTGCATGTGGTGAGGCGGCGTGAGACGTGAAGGCAAAA
GGAAAAGAGGGAGGCCATGGCGCGAAGAGCTGAAGCGGGGCCAAACGGAG
CCTTGCAGCTTCTTCCTCCTCTGCCCTGCCCTGGGATTGTCGCACGCACG
CTCGTCGCAAGCTAGATGGCTAAACTGCGGTAATCACATTGGCATGAGCA
GAGCGTGGTCACGCCTCTGTCCTTTCCGCAGGCCCGCATCATCTTTTTTA
GCAACCGACAACTTTCCTCTCACTTGCCCCCTTCCAGTTGGGAGCCCAAC
CTCTCTCCACAGCACACAGATCTGCACCCTACAAGCTCTCTCAAGACCAC
CTTCAGCATGGAAACCGCCTACGCCTTTCGCCTTTTTTCCCTCCTCCTGC
TCTCCCTCCTTCTTCACCTATCCCTCGTCCCCGCCGCCCGCGCGGCAGAT
CCTCCTGCCTTGCCCTTGACCGCCTCGGAGTACAGCGTCGTGATCCTCGG
TGAGCCTTCCTCCAGCGCGCGCGTCGATTTCTTCCTGGATCTCGTCTGTG
TCGACACAAAAAATGCCTGGCCTGTGATTAAGGAGGTGATTGAGATGTAT
GGCCGGGACGTGCAATGGCGCTTTCATCAGTTTCCTCTGCCATACCATAC
CAATGCTTTCTTGGTCGCTAAAGGAGCCGTTATCGCCGCCCTCTATGCCA
ACGACACTGCCGCCCTTGACTACATGGACGTCGCTTTCGACCGCCAATCG
GACGTGTTGAATGAAGAAACAAAAGACATGAGTTACGCCGAAGTAAGTGA
GCGCGTTCAAGGCTGGGTTCGCGAAACTACCGGGCTAAGCGACAAGAGAG
TCAAGCAGGGCCTGGAATTGGGCGAGGTAGAGGAAGCTGTTCGGGTTTCA
TTCAAGTACGCGGCGATCCGCTCCGTGTTTGGGACGCCAATGTTTATGAT
AAACCAGATTATGGTTCCCGGTTTAGACAGTGAGAGTGGGTTGCAAGACT
GGAAGATGTACCTGGAGCCCTTGTTGGCGCGCGCGGAACGCAAAGACTGA
GCTTGAGATCTCTCAGTATCCAGGAGTGTCAGAGTACGTTTGTTTGTTTG
AATCTCATTCTGAATCCTGAGGACAGTGGGGGGGAGAGTACACGAAAAGA
CTCGATGCCTGGGGCAAGTGCGGGCGACCGTGCACAGCGAAGTATTTTTT
CGCACACGTGCAGACCCCTCGAAATATATGAAAGTTCGCCCGTTGGTTTG
TGGACAATCAGGAGGGGAAACGATGCAAATGGAGAATATAGATGTGTGTA
AATAATTAGGTCAGGAAGTGTTAAGGCGGAGAGCCCGCACAACGTGTACA
TACCGCCATTTGTAGGGGAACCAAATGAATTCAGGATAAGACAAGAAAGA
GGATCGGATAAACCTGGAC back to topprotein sequence of NO16G02760.1 >NO16G02760.1-protein ID=NO16G02760.1-protein|Name=NO16G02760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
METAYAFRLFSLLLLSLLLHLSLVPAARAADPPALPLTASEYSVVILGEP
SSSARVDFFLDLVCVDTKNAWPVIKEVIEMYGRDVQWRFHQFPLPYHTNA
FLVAKGAVIAALYANDTAALDYMDVAFDRQSDVLNEETKDMSYAEVSERV
QGWVRETTGLSDKRVKQGLELGEVEEAVRVSFKYAAIRSVFGTPMFMINQ
IMVPGLDSESGLQDWKMYLEPLLARAERKD* back to topmRNA from alignment at chr16:793265..796747+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO16G02760.1 ID=NO16G02760.1|Name=NO16G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=3483bp|location=Sequence derived from alignment at chr16:793265..796747+ (Nannochloropsis oceanica)
TCCTTAGTTGAAGCTTTGCTTCACTTCATTTTTCTTCTTTTTCTGTTGTG
TGTGTACGGTCATCTTTCCCTCCTGTTTGCCTGTTCTTCTCTTCCCCTCT
GCAGGCCTTTAGTTCCGTACGCAAAATATAAAATTACGTCATCCTTCCTC
ACTCCCCTAGCTTTCTTCCATCTTCCCTTCTTGCCCTCCAATTACAGCTC
TTCTTTATCCTCGTCCTCTTCCTCTTCCCCTTCCTCCTCTTCCCCTCCGC
CCGCCATGATCCTCCTTCTTCTTTCGGCCTCCTCCTTAGCCTCTTGCCAC
ACTTCTTCCATCAATGCATCGTGCTCCAGTGCCTCCTCCTTCCCTTCCTC
CTGTTCCTCCCCACCCTCCATACGCACATGTCTCTCCCTCTCCTCCCTCA
CGGCTTCCTTCAACTCCTCCAACACACCGATACCTCCCTCCCCACTCTCC
TCCGCCGCCGGTTGAGAAATCGAGCTCAGGTAGCCCCCCCAAGCAATTGA
CATGAAGGTGTTAAACAGCGGCCGATGGCTCGCAGGCACGTAGGCATATA
AAATCGTGTCATACACCGGCCACACTTGCAAAGACCGCAACCACGTCAGC
AAAAAGCGCTTTCGAAACTTCTCCGGCAGCTTGGCAAAGCGCTTCTTCCA
CCCTACCCCTCCGTCCAACGCTGCGGTCAAAACCATCATAGACGCGATCT
TATAAACCCCGATGGTCGGCCATTCGATCCAATACTTGGCCCAGGCCACA
CATAGCTTGTAGTACGTCCCCTCGGCCTTCCCGAATCGCTCCTCTGTAAA
TAAGTGGTACGGGAACCGACGATCGATGTATTTGTAGTAGCTGTAGTGGA
TCAGCCCATTGTTCAAGGCGCCGATCAAGCCGGACCTCACAGCGCGCCAG
GCCTTTACCCCCACCTTCTTCACGCCCCTCAAGCCCCCCTGCTCCAAGAT
CTGAAAGTACGTATCGCCTGCCAGGCACAGAATGAACCCCTGGACAACAT
TGAAACTAATCGGAAAATTCTGCAGCAATGGTGTGAAGATGATGGCCGCA
ATGTCCATACCAAACAAGGCAGTGGCCCCTGCGGCGATCACGGCCGGGTT
TCCAGCGATCTTGCCCTTGTAGTATGGCGTGACGCGCGGTTTTTGAACTT
TCAAACGACACGACTCCGAGAATGTGGCGTCGAGGAATCGGTACTTGTAG
TGGCAGTGACTCACGGGCTCGCACCGACGGATGCGATAATCGAAGAAGCA
GCCATCGTCGGAGGTGGGGATGGAGGACGCGGTGAGGTTGGTCTTTTTCC
CGACCGTGTCGGGCAGGAGGAGAAGGGAGACGAGTAAGGAAAGAAGCAGG
GAGAGGGAGGAGATAAGTCTGGTGGAGCCTCCTTGAATAGCCATGGTGAC
AGTGGTGTGGCAGTACTGCTGGTACAAGCGGAGCTAGTGTCGCTCTTGCT
ATTGCTCGAGCCTGCTACTACTGCTACTAGTGCGGCTGCTGATGCGGCTG
CAGGTGCAGATGCTAAGAGTCGATCACCTCCCTTCTGTCGTCGTAAATAA
GAGTAGACAATGATGTGCCTGGCCCTCCTCGTGTTGGCGGCAGTCCCTGC
TGTTGTCATGTCATGAAGGGAATAGGGTTAGCGAGGACGTGTCGTGGTGT
GCGCGAGAAAAGGAAGAAATGTGAAATGTTTTCCCCTCCTCACGGCTGGC
AGCAAAGCCAGCTACCAGCCTGTCGCAGCACAGTGCGCCCACACCAATGT
CCGTCGTGCAGTGGGGCGCCTGGGACCTAGGGTATTTAGGGTGGTGTTGG
CTCACGGTCACGGATTTGTGATCATCGCCGCTTCCTGTCTTCAACCACAA
GCAGGGCCAAAAGCAGAGTTCGACAAACGCAGTGGACCGTTTTGACTGAC
CCACACAACCCTTGACAATGAGACGACCAGCCTCGTTACGGGCGTCTTGT
GTTATGTTCGCTCTGCATGTGGTGAGGCGGCGTGAGACGTGAAGGCAAAA
GGAAAAGAGGGAGGCCATGGCGCGAAGAGCTGAAGCGGGGCCAAACGGAG
CCTTGCAGCTTCTTCCTCCTCTGCCCTGCCCTGGGATTGTCGCACGCACG
CTCGTCGCAAGCTAGATGGCTAAACTGCGGTAATCACATTGGCATGAGCA
GAGCGTGGTCACGCCTCTGTCCTTTCCGCAGGCCCGCATCATCTTTTTTA
GCAACCGACAACTTTCCTCTCACTTGCCCCCTTCCAGTTGGGAGCCCAAC
CTCTCTCCACAGCACACAGATCTGCACCCTACAAGCTCTCTCAAGACCAC
CTTCAGCATGGAAACCGCCTACGCCTTTCGCCTTTTTTCCCTCCTCCTGC
TCTCCCTCCTTCTTCACCTATCCCTCGTCCCCGCCGCCCGCGCGGCAGAT
CCTCCTGCCTTGCCCTTGACCGCCTCGGAGTACAGCGTCGTGATCCTCGG
TGAGCCTTCCTCCAGCGCGCGCGTCGATTTCTTCCTGGATCTCGTCTGTG
TCGACACAAAAAATGCCTGGCCTGTGATTAAGGAGGTGATTGAGATGTAT
GGCCGGGACGTGCAATGGCGCTTTCATCAGTTTCCTCTGCCATACCATAC
CAATGCTTTCTTGGGTGAGTGCTGTTTGCCTCTTGCATTTCACAAGCCTC
CTCGCCCATCGCGTGAACTCGCAAAGCAAAAATTGACTCATATTTTCCTG
TCAACTTTCCTTCCTCCCCTCCCTCCAGTCGCTAAAGGAGCCGTTATCGC
CGCCCTCTATGCCAACGACACTGCCGCCCTTGACTACATGGACGTCGCTT
TCGACCGCCAATCGGACGTGTTGAATGAAGAAACAAAAGACATGAGTTAC
GCCGAAGTAAGTGAGCGCGTTCAAGGCTGGGTTCGCGAAACTACCGGGCT
AAGCGACAAGAGAGTCAAGCAGGGCCTGGAATTGGGCGAGGTAGAGGAAG
CTGTTCGGGTTTCATTCAAGTACGCGGCGATCCGCTCCGTGTTTGGGACG
CCAATGTTTATGATAAACCAGATTATGGTTCCCGGTTTAGACAGTGAGAG
TGGGTTGCAAGACTGGAAGATGTACCTGGAGCCCTTGTTGGCGCGCGCGG
AACGCAAAGACTGAGCTTGAGATCTCTCAGTATCCAGGAGTGTCAGAGTA
CGTTTGTTTGTTTGAATCTCATTCTGAATCCTGAGGACAGTGGGGGGGAG
AGTACACGAAAAGACTCGATGCCTGGGGCAAGTGCGGGCGACCGTGCACA
GCGAAGTATTTTTTCGCACACGTGCAGACCCCTCGAAATATATGAAAGTT
CGCCCGTTGGTTTGTGGACAATCAGGAGGGGAAACGATGCAAATGGAGAA
TATAGATGTGTGTAAATAATTAGGTCAGGAAGTGTTAAGGCGGAGAGCCC
GCACAACGTGTACATACCGCCATTTGTAGGGGAACCAAATGAATTCAGGA
TAAGACAAGAAAGAGGATCGGATAAACCTGGAC back to topCoding sequence (CDS) from alignment at chr16:793265..796747+ >NO16G02760.1 ID=NO16G02760.1|Name=NO16G02760.1|organism=Nannochloropsis oceanica|type=CDS|length=693bp|location=Sequence derived from alignment at chr16:793265..796747+ (Nannochloropsis oceanica)
ATGGAAACCGCCTACGCCTTTCGCCTTTTTTCCCTCCTCCTGCTCTCCCT
CCTTCTTCACCTATCCCTCGTCCCCGCCGCCCGCGCGGCAGATCCTCCTG
CCTTGCCCTTGACCGCCTCGGAGTACAGCGTCGTGATCCTCGGTGAGCCT
TCCTCCAGCGCGCGCGTCGATTTCTTCCTGGATCTCGTCTGTGTCGACAC
AAAAAATGCCTGGCCTGTGATTAAGGAGGTGATTGAGATGTATGGCCGGG
ACGTGCAATGGCGCTTTCATCAGTTTCCTCTGCCATACCATACCAATGCT
TTCTTGGTCGCTAAAGGAGCCGTTATCGCCGCCCTCTATGCCAACGACAC
TGCCGCCCTTGACTACATGGACGTCGCTTTCGACCGCCAATCGGACGTGT
TGAATGAAGAAACAAAAGACATGAGTTACGCCGAAGTAAGTGAGCGCGTT
CAAGGCTGGGTTCGCGAAACTACCGGGCTAAGCGACAAGAGAGTCAAGCA
GGGCCTGGAATTGGGCGAGGTAGAGGAAGCTGTTCGGGTTTCATTCAAGT
ACGCGGCGATCCGCTCCGTGTTTGGGACGCCAATGTTTATGATAAACCAG
ATTATGGTTCCCGGTTTAGACAGTGAGAGTGGGTTGCAAGACTGGAAGAT
GTACCTGGAGCCCTTGTTGGCGCGCGCGGAACGCAAAGACTGA back to top
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