|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr16 | genome | chr16:745122..748755 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO16G02580.1 vs.
Match: EWM23857.1 (Ferredoxin reductase-type FAD-binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 764.2 bits (1972), Expect = 2.000e-217 Identity = 369/412 (89.56%), Postives = 393/412 (95.39%), Query Frame = 0
Query: 1 MRLSLTLGALMASSAVAFVPPMPASRTRATKLASSLIPDNVRKTLTGDQLKTLEAAAEKATKAAAADLDPWFGEAEADDSSFAPFSALESMTGKPAPVPSASGAQDFLEANPYYDQTNIPLNTYKNKEPHTGKIVSVKRMVGPKATGETCHIIIDHGGAMPFWEGQSYGVVPPGINPKNGKPNNVRLYSIASTRYGDDMKGQTASLCVRRATYWCPELKAEDPAKKGICSNFLCDAKPGDKIALAGPTGKVMLIPEKTPEADIIMIATGTGIAPYRTFVRRLFVEDTPARKAFKGLAWLFLGVANTDSLLYDEEWQAVKKEYPNNFRVDYALSREQENKKGGKMYIQDKMEEYADEIFDRLSKGGHIYFCGLKGMMPGIQETLERVAGEKGIDWKEMLDGLKKNHQWHVEVY 413
MRLSLT+ AL+ASSAVAFVPPMP++R +AT LAS+ IPDNVRK+L+ DQLKTLE AAE+A+KAAAADLDPWFGEAEADD SFA FS+LESMTGKPA SGAQDFLEANPY+DQ+NIPLNTYKNKEPHTGKIVSVKR+VGPKATGETCHIIIDHGGAMP+WEGQSYGVVPPGINPKNGKPNNVRLYSIASTRYGDDMKGQTASLCVRRATYWCPELKAEDPAKKGICSN+LCDAKPGD +ALAGPTGKVMLIPEKTPEAD+IM+ATGTGIAPYRTFVRRLFVEDTPARKAFKGLAWLFLGVAN DSLLYD+EWQ VKK YPNNFRVDYALSREQENKKGGKMYIQDKMEEYADEIFDRLSKG HIYFCGLKGMMPGIQ+TLERVA EKGI+WK+ML+GLKKNHQWHVEVY
Sbjct: 27 MRLSLTVSALLASSAVAFVPPMPSTR-QATHLASARIPDNVRKSLSADQLKTLEVAAEQASKAAAADLDPWFGEAEADDGSFASFSSLESMTGKPAAAGGTSGAQDFLEANPYFDQSNIPLNTYKNKEPHTGKIVSVKRIVGPKATGETCHIIIDHGGAMPYWEGQSYGVVPPGINPKNGKPNNVRLYSIASTRYGDDMKGQTASLCVRRATYWCPELKAEDPAKKGICSNYLCDAKPGDSVALAGPTGKVMLIPEKTPEADLIMVATGTGIAPYRTFVRRLFVEDTPARKAFKGLAWLFLGVANKDSLLYDDEWQEVKKAYPNNFRVDYALSREQENKKGGKMYIQDKMEEYADEIFDRLSKGAHIYFCGLKGMMPGIQDTLERVAQEKGIEWKDMLEGLKKNHQWHVEVY 437
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO16G02580.1 ID=NO16G02580.1|Name=NO16G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2968bp GTGCCATTTCTTATTTTGGTTGTTTCCTCTTGTCTTTTCCCGCTTTTCTT CCCAGTCGGGGTCGGACCCCCTGCGGCAAGCACAAGAAGCATCGCCGCGG AAAAAGTGTGCGTAAAGATTGCCCATCAAGTTGCAGTGCGGTGCAGGCCG ATTGATTGAATGGCTGGCTGGCGTTTTCTGTTCAGATCACAGCCTTTTCA CCAAACATCTGCATTGTTTGTAAGGCGACGAGGAAGAGTTAAGAACATGC TTGGTTCTGTCTCGGTGGTCATGTTACAACGCGAGGACAATCCGTGCCTC CTTGCATTTTTTCCCCAGCAAAGGTGAAGAAACGTGGATACGGCTCGCTA TGACTGCAGCTTCCTCCCGTTCCCCCTTTCACCCGAGTCTGTTGCCCTTC TAATTCTCCCCGTACCTCTGCCCACACTTTGCGAGAGCCTTCTATGGTCT CCGGGCCCACGGAGGACATGGCGGGGCTTCCAAAATCCTCTTGAGCAAGA AGAAGGGGTCTCTACACCCTCCAATTCCTCGTTCACGCCCACCCATCAAA CCCACAAAGCCCACACGACAAACACGGGCACGCTTCCTAGGCATGCCGCT ACATTCGAGTGTCAATACATGAAGAGAGGCGATGGGCGGCCTGTCTTTTT TCAGCAAGGTGGAGTGGCCGCCATCCTCTCACTCGCCAGGCCCCGGCTCG GGAGGGAAGGAGTTGAGAGGGCGCGTGTGCGCGCGTGCTTCCTCGGTCTT GCTCTTTTTGGTGGTTGTGTGTGTGAATGCAGTGGCTAGGCTAGTAGGAG CTAGCAAAGATGGTAGCAAAGGGGCAGACAGGGAGTCATATGTCGCGGAG CGCGGGCGGCCACAAGCACTTCCTGCCTCAGCCCCTGGATCTAGCAGCAC AGTGACTCAGACCTGCCCCGTCCTCTAAGCCGCTTTTGTCATAATCTAAC TCTCGCTCACTCCAAATTTACAGCGAAAAAATGCGTCTGTCCCTCACCCT CGGGGCCTTGATGGCCTCCAGCGCGGTGGCGTTCGTGCCCCCCATGCCCG CCTCCCGTACCCGGGCGACGAAGCTGGCCTCCTCCCTCATCCCCGACAAC GTCCGCAAGACCCTGACCGGCGACCAGCTCAAGACCCTCGAGGCCGCCGC CGAGAAGGCCACCAAGGCCGCCGCCGCCGACCTTGACCCCTGGTTTGGGG AGGCGGAGGCGGACGACTCGTCTTTCGCTCCCTTCTCCGCCCTCGAGTCC ATGACCGGCAAGCCCGCCCCGGTGCCCAGTGCCAGCGGCGCCCAGGACTT CCTGGAGGCGAACCCGTACTACGACCAGACCAACATCCCACTCAACACGT ACAAGAACAAGGAGCCACACACCGGCAAGATCGTGTCCGTTAAGAGGATG GTGGGCCCCAAGGCCACCGGCGAGACGTGCCACATCATCATCGACCACGG GGGCGCCATGCCCTTCTGGGAGGGCCAGTCCTACGGCGTGGTGCCCCCCG GGATCAACCCCAAGAACGGTAAGCCCAACAACGTCCGCCTCTACTCCATC GCCTCCACCCGCTACGGCGACGACATGAAGGGCCAGACCGCCTCCCTTTG TGTCCGTAGGGCCACGTACTGGTGCCCCGAGCTCAAGGCCGAGGACCCTG CCAAGAAGGGCATCTGCTCCAACTTCCTCTGTGACGCCAAGCCTGGCGAC AAGATCGCCCTGGCCGGCCCCACGGGCAAGGTAATGCTCATCCCCGAGAA GACCCCCGAGGCCGACATCATCATGATCGCCACGGGCACGGGCATCGCGC CCTACCGCACCTTTGTGCGCCGCCTGTTCGTGGAGGACACCCCGGCGCGC AAGGCCTTCAAAGGCCTGGCTTGGCTCTTCTTGGGCGTGGCTAACACGGA CTCGCTGCTCTATGACGAGGAGTGGCAGGCGGTGAAGAAGGAGTACCCCA ACAACTTCCGCGTGGACTACGCGCTCTCCCGCGAGCAGGAGAACAAGAAG GGCGGCAAGATGTATATCCAGGACAAGATGGAGGAGTACGCCGACGAAAT TTTCGACCGCCTGTCCAAGGGCGGGCACATCTACTTCTGTGGCCTCAAGG GCATGATGCCCGGCATCCAAGAGACCCTCGAGAGGGTGGCGGGCGAGAAG GGGATTGACTGGAAGGAGATGCTCGACGGGTTGAAGAAGAACCACCAGTG GCACGTTGAGGTGTACTAAGCGTATCTCTGTCCATTCGTCCTCCTCCTAC CCTCCGTTGCTTGTGGTGGAAGGATGGGGGGTGATTAGTGCTGTGTGGAG GCAGGAGGGGGAGAGCAGGAGGAAGGGAGGGTGGGCGGTGTGATAGCATA GTAGTGTGCCTTGTGGCCGTCTTGACCACCTGTTCTCTTTTTCTGAGTTT AAGAGCTGGGGGAAGGGGGGAATGAGCGGTGCCGGTGTTGGATGAGAAGG CAAGCAGGTTTGAAAGAAAAGAAAAACAACAAAAACAACAAGAACAACAT AACAATAACGCGCGCGGCCCCCGGCGTGTCAATTATTTCATGTCTGATGC CGCCCAGCGGTGCCCTGTCTATGTGAGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGCTGCTAATAGTAGTGGTAGGGGAGAGAAGATGAAA TCAGAGCGATTTCGGGATTTGGAAGGCGCCCTTAGTGTGAGAAAAACAGT GAGGGAGAAAGACATGAAAGGAATGGAGGGAGGGCCTGCTTGGACTTTTT TGGTAGTCCTTATCAGGTGAGCAAGGGTGATTGTAGAGATCAGGTCCTTG GATTTCTTTGTCCGAATGAAGGGATAAGAGACGAAGGAGAAGGAGGGCGA GGAGGAGGAGGAGGAGGAGGTTATAATTCCTACTAAAGCCTTGTCCTTCA CGGTACCATGGACTACCCGGCAATAACCAACCACCAAATGAAAACACGAG GCCGAAATCTGCTCCCTC back to topprotein sequence of NO16G02580.1 >NO16G02580.1-protein ID=NO16G02580.1-protein|Name=NO16G02580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp MRLSLTLGALMASSAVAFVPPMPASRTRATKLASSLIPDNVRKTLTGDQL KTLEAAAEKATKAAAADLDPWFGEAEADDSSFAPFSALESMTGKPAPVPS ASGAQDFLEANPYYDQTNIPLNTYKNKEPHTGKIVSVKRMVGPKATGETC HIIIDHGGAMPFWEGQSYGVVPPGINPKNGKPNNVRLYSIASTRYGDDMK GQTASLCVRRATYWCPELKAEDPAKKGICSNFLCDAKPGDKIALAGPTGK VMLIPEKTPEADIIMIATGTGIAPYRTFVRRLFVEDTPARKAFKGLAWLF LGVANTDSLLYDEEWQAVKKEYPNNFRVDYALSREQENKKGGKMYIQDKM EEYADEIFDRLSKGGHIYFCGLKGMMPGIQETLERVAGEKGIDWKEMLDG LKKNHQWHVEVY* back to topmRNA from alignment at chr16:745122..748755- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO16G02580.1 ID=NO16G02580.1|Name=NO16G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=3634bp|location=Sequence derived from alignment at chr16:745122..748755- (Nannochloropsis oceanica) GTGCCATTTCTTATTTTGGTTGTTTCCTCTTGTCTTTTCCCGCTTTTCTT
CCCAGTCGGGGTCGGACCCCCTGCGGCAAGCACAAGAAGCATCGCCGCGG
AAAAAGTGTGCGTAAAGATTGCCCATCAAGTTGCAGTGCGGTGCAGGCCG
ATTGATTGAATGGCTGGCTGGCGTTTTCTGTTCAGATCACAGCCTTTTCA
CCAAACATCTGCATTGTTTGTAAGGCGACGAGGAAGAGTTAAGAACATGC
TTGGTTCTGTCTCGGTGGTCATGTTACAACGCGAGGACAATCCGTGCCTC
CTTGCATTTTTTCCCCAGCAAAGGTGAAGAAACGTGGATACGGCTCGCTA
TGACTGCAGCTTCCTCCCGTTCCCCCTTTCACCCGAGTCTGTTGCCCTTC
TAATTCTCCCCGTACCTCTGCCCACACTTTGCGAGAGCCTTCTATGGTCT
CCGGGCCCACGGAGGACATGGCGGGGCTTCCAAAATCCTCTTGAGCAAGA
AGAAGGGGTCTCTACACCCTCCAATTCCTCGTTCACGCCCACCCATCAAA
CCCACAAAGCCCACACGACAAACACGGGCACGCTTCCTAGGCATGCCGCT
ACATTCGAGTGTCAATACATGAAGAGAGGCGATGGGCGGCCTGTCTTTTT
TCAGCAAGGTGGAGTGGCCGCCATCCTCTCACTCGCCAGGCCCCGGCTCG
GGAGGGAAGGAGTTGAGAGGGCGCGTGTGCGCGCGTGCTTCCTCGGTCTT
GCTCTTTTTGGTGGTTGTGTGTGTGAATGCAGTGGCTAGGCTAGTAGGAG
CTAGCAAAGATGGTAGCAAAGGGGCAGACAGGGAGTCATATGTCGCGGAG
CGCGGGCGGCCACAAGCACTTCCTGCCTCAGCCCCTGGATCTAGCAGCAC
AGTGACTCAGACCTGCCCCGTCCTCTAAGCCGCTTTTGTCATAATCTAAC
TCTCGCTCACTCCAAATTTACAGCGAAAAAATGCGTCTGTCCCTCACCCT
CGGGGCCTTGATGGCCTCCAGCGCGGTGGCGTTCGTGCCCCCCATGCCCG
CCTCCCGTACCCGGGCGACGAAGCTGGTACGTAAATTGCCTGCCTTTCCT
TCTGTCTGTGTTCTGTGTATGTCTGTCTGGCGGGTCGTTTGTGCAATACT
AAAATGACTGTCGACGGTAGGCTCTTGATCAAGTGGGGTATGCCTGCTTG
TCGGCCCTGGTAAGCTGGGGCCGACATGTCCCGATCTACCCTCACCCCCT
CCCTCCGTCCTACCCTCCGCCCCATCCCCAGGGCACAATGAATGATCCGC
ACACCCATCCACCCGTCCGCTCTCATACAAACCCTCCACCAATCTCACAT
CTGCCCTTTCGTTCCCTCGCTCCCTCACCTCCCTCCCCTTGCTACAGGCC
TCCTCCCTCATCCCCGACAACGTCCGCAAGACCCTGACCGGCGACCAGCT
CAAGACCCTCGAGGCCGCCGCCGAGAAGGCCACCAAGGCCGCCGCCGCCG
ACCTTGACCCCTGGTTTGGGGAGGCGGAGGCGGACGACTCGTCTTTCGCT
CCCTTCTCCGCCCTCGAGTCCATGACCGGCAAGCCCGCCCCGGTGCCCAG
TGCCAGCGGCGCCCAGGACTTCCTGGAGGCGAACCCGTACTACGACCAGA
CCAACATCCCACTCAACACGTACAAGAACAAGGAGCCACACACCGGCAAG
ATCGTGTCCGTTAAGAGGATGGTGGGCCCCAAGGCCACCGGTAAGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGATGGAGAGTAACGCGTAGCAGGCCTT
CCAGCAGGAGGAGGAGGAACTGCAAGAGAGGTGTGGAGAAGCAATCTCGT
ATTTCCGAGCCCGTCCGAGCGTGCTTTTCCTTTGCGGGACCCACACGCGA
TATTACTCACGCCTTGTCTGTCGCCCTCCCCTCGCCCCCTCCGCTTCAGG
CGAGACGTGCCACATCATCATCGACCACGGGGGCGCCATGCCCTTCTGGG
AGGGCCAGTCCTACGGCGTGGTGCCCCCCGGGATCAACCCCAAGAACGGT
AAGCCCAACAACGTCCGCCTCTACTCCATCGCCTCCACCCGCTACGGCGA
CGACATGAAGGGCCAGACCGCCTCCCTTTGTGTCCGTAGGGCCACGTACT
GGTGCCCCGAGCTCAAGGCCGAGGACCCTGCCAAGAAGGGCATCTGCTCC
AACTTCCTCTGTGACGCCAAGCCTGGTACGTCCTTCCTGCCTTCTTTCCC
TCCCTCCCTCCCTTACTCCTATCCAGGCAAACGGCACTGGAACATGCCAC
CTCCACGAAAAGGCACCCACCCCTCCCTCCCTCCCTCCCTCTTCCCTCAC
TCCCTGTCTAGGCGACAAGATCGCCCTGGCCGGCCCCACGGGCAAGGTAA
TGCTCATCCCCGAGAAGACCCCCGAGGCCGACATCATCATGATCGCCACG
GGCACGGGCATCGCGCCCTACCGCACCTTTGTGCGCCGCCTGTTCGTGGA
GGACACCCCGGCGCGCAAGGCCTTCAAAGGCCTGGCTTGGCTCTTCTTGG
GCGTGGCTAACACGGACTCGCTGCTCTATGACGAGGAGTGGCAGGCGGTG
AAGAAGGAGTACCCCAACAACTTCCGCGTGGACTACGCGCTCTCCCGCGA
GCAGGAGAACAAGAAGGGCGGCAAGATGTATATCCAGGACAAGATGGAGG
AGTACGCCGACGAAATTTTCGACCGCCTGTCCAAGGGCGGGCACATCTAC
TTCTGTGGCCTCAAGGGCATGATGCCCGGCATCCAAGAGACCCTCGAGAG
GGTGGCGGGCGAGAAGGGGATTGACTGGAAGGAGATGCTCGACGGGTTGA
AGAAGAACCACCAGTGGCACGTTGAGGTGTACTAAGCGTATCTCTGTCCA
TTCGTCCTCCTCCTACCCTCCGTTGCTTGTGGTGGAAGGATGGGGGGTGA
TTAGTGCTGTGTGGAGGCAGGAGGGGGAGAGCAGGAGGAAGGGAGGGTGG
GCGGTGTGATAGCATAGTAGTGTGCCTTGTGGCCGTCTTGACCACCTGTT
CTCTTTTTCTGAGTTTAAGAGCTGGGGGAAGGGGGGAATGAGCGGTGCCG
GTGTTGGATGAGAAGGCAAGCAGGTTTGAAAGAAAAGAAAAACAACAAAA
ACAACAAGAACAACATAACAATAACGCGCGCGGCCCCCGGCGTGTCAATT
ATTTCATGTCTGATGCCGCCCAGCGGTGCCCTGTCTATGTGAGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGCTAATAGTAGTGGTAG
GGGAGAGAAGATGAAATCAGAGCGATTTCGGGATTTGGAAGGCGCCCTTA
GTGTGAGAAAAACAGTGAGGGAGAAAGACATGAAAGGAATGGAGGGAGGG
CCTGCTTGGACTTTTTTGGTAGTCCTTATCAGGTGAGCAAGGGTGATTGT
AGAGATCAGGTCCTTGGATTTCTTTGTCCGAATGAAGGGATAAGAGACGA
AGGAGAAGGAGGGCGAGGAGGAGGAGGAGGAGGAGGTTATAATTCCTACT
AAAGCCTTGTCCTTCACGGTACCATGGACTACCCGGCAATAACCAACCAC
CAAATGAAAACACGAGGCCGAAATCTGCTCCCTC back to topCoding sequence (CDS) from alignment at chr16:745122..748755- >NO16G02580.1 ID=NO16G02580.1|Name=NO16G02580.1|organism=Nannochloropsis oceanica|type=CDS|length=1239bp|location=Sequence derived from alignment at chr16:745122..748755- (Nannochloropsis oceanica) ATGCGTCTGTCCCTCACCCTCGGGGCCTTGATGGCCTCCAGCGCGGTGGC GTTCGTGCCCCCCATGCCCGCCTCCCGTACCCGGGCGACGAAGCTGGCCT CCTCCCTCATCCCCGACAACGTCCGCAAGACCCTGACCGGCGACCAGCTC AAGACCCTCGAGGCCGCCGCCGAGAAGGCCACCAAGGCCGCCGCCGCCGA CCTTGACCCCTGGTTTGGGGAGGCGGAGGCGGACGACTCGTCTTTCGCTC CCTTCTCCGCCCTCGAGTCCATGACCGGCAAGCCCGCCCCGGTGCCCAGT GCCAGCGGCGCCCAGGACTTCCTGGAGGCGAACCCGTACTACGACCAGAC CAACATCCCACTCAACACGTACAAGAACAAGGAGCCACACACCGGCAAGA TCGTGTCCGTTAAGAGGATGGTGGGCCCCAAGGCCACCGGCGAGACGTGC CACATCATCATCGACCACGGGGGCGCCATGCCCTTCTGGGAGGGCCAGTC CTACGGCGTGGTGCCCCCCGGGATCAACCCCAAGAACGGTAAGCCCAACA ACGTCCGCCTCTACTCCATCGCCTCCACCCGCTACGGCGACGACATGAAG GGCCAGACCGCCTCCCTTTGTGTCCGTAGGGCCACGTACTGGTGCCCCGA GCTCAAGGCCGAGGACCCTGCCAAGAAGGGCATCTGCTCCAACTTCCTCT GTGACGCCAAGCCTGGCGACAAGATCGCCCTGGCCGGCCCCACGGGCAAG GTAATGCTCATCCCCGAGAAGACCCCCGAGGCCGACATCATCATGATCGC CACGGGCACGGGCATCGCGCCCTACCGCACCTTTGTGCGCCGCCTGTTCG TGGAGGACACCCCGGCGCGCAAGGCCTTCAAAGGCCTGGCTTGGCTCTTC TTGGGCGTGGCTAACACGGACTCGCTGCTCTATGACGAGGAGTGGCAGGC GGTGAAGAAGGAGTACCCCAACAACTTCCGCGTGGACTACGCGCTCTCCC GCGAGCAGGAGAACAAGAAGGGCGGCAAGATGTATATCCAGGACAAGATG GAGGAGTACGCCGACGAAATTTTCGACCGCCTGTCCAAGGGCGGGCACAT CTACTTCTGTGGCCTCAAGGGCATGATGCCCGGCATCCAAGAGACCCTCG AGAGGGTGGCGGGCGAGAAGGGGATTGACTGGAAGGAGATGCTCGACGGG TTGAAGAAGAACCACCAGTGGCACGTTGAGGTGTACTAA back to top
|