NO16G02540.1, NO16G02540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02540.1
Unique NameNO16G02540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1641
Alignment locationchr16:727391..729031 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:727391..729031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02540.1 vs.
Match: XP_005855086.1 (aldo keto reductase [Nannochloropsis gaditana CCMP526]; EKU21270.1 aldo keto reductase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 587.0 bits (1512), Expect = 5.900e-164
Identity = 303/477 (63.52%), Postives = 358/477 (75.05%), Query Frame = 0 
Query:   65 NSIPGSDVGMILPISRIGYGTYRIGHNSEEQAGSLRQALLQGINLIDTSANYGNGEAEEVVGEVMKTLIEEGAIQRQDVVIVSKAGYIQGQNMERYQDGTVKTPDTVEVASYLAHCIHPAFLQDQLNRSLDRLNLPSLDVFLLHNPEYYLTHNIPAGRRDISDAALEDHRAEMDRRLFEAFKAMEAEIASGQGRIESYGISSNSFSLPPTHPHFLKYDHLVEMAQRAAKAVASQVEGEEEVEGEERAPKHHFSTIQLPGNLLEQEGLDHAADWAAQNGLMVLINRPLNAFNDRMSLRLAEYEDTRPAYEEARNVLLAYLDA--VAEDKGADNFRVIFRPEIEEIDTYLQKQAGEGKINVLSWENLSSQSIVPALRRGLQATANAEGTFDTQAMRLAQDFLDACKRFVSFHSGTHAREVVEGELGFGRLPEGKSLQEFAVEWLLAREGVTCVLLGCRNMRYVTDAVKVNAMFPSVTSF 540
            NS      G  LPISRIGYGTYRIG N+ EQA SLR+ALL GIN+IDTSANYGNGEAEE +G+V++ L++EG ++R+D+++VSK GYIQGQNM+RY  GTV+TPDTVEVASYL HCIHPAF+QDQL RSL RL +PSLDVFLLHNPEYYLTHN+PA    IS   L+ HR EMDRRL EAFKA+E EIASGQGRI SYGISSNSFSLPP HPHFL+YDHL  MA  AAKAV+ +            A  HHFSTIQLP NLLEQEGL  A  WAA+  L VLINRPLNAF+DRMSLRLAEY D+RPAY  AR+ LL Y+DA   A      +   +F+ E+E ID  L   A +   +VL+WE +SS+ ++P LRRGL+ATA  + TFD + MRLAQ++L AC+R VS+ SG HARE +E  LGFG +P  KSLQEFA+E+LL   GV+ VLLGCRN RYV DA+K+N   PSV  F
Sbjct:    5 NSADPVMAGCGLPISRIGYGTYRIGLNNAEQAESLREALLHGINVIDTSANYGNGEAEECIGQVVRELMQEGKLKREDILLVSKVGYIQGQNMDRYLAGTVRTPDTVEVASYLGHCIHPAFIQDQLGRSLARLGMPSLDVFLLHNPEYYLTHNVPAQAGAISAEDLQTHRDEMDRRLLEAFKALEGEIASGQGRIRSYGISSNSFSLPPEHPHFLRYDHLAAMAMEAAKAVSPE------------AQVHHFSTIQLPANLLEQEGLHRAVQWAARTSLTVLINRPLNAFDDRMSLRLAEYPDSRPAYHHARDALLQYIDAQKTALSGHEKDGYTLFQEEVEGIDAAL---AQKDLHSVLAWEGISSRMVMPMLRRGLEATARPDKTFDAEGMRLAQEYLRACERLVSYLSGIHAREEIEKTLGFGPIPAEKSLQEFAIEFLLEHAGVSTVLLGCRNTRYVRDAIKINDKHPSVHRF 466
The following BLAST results are available for this feature:
BLAST of NO16G02540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855086.15.900e-16463.52aldo keto reductase [Nannochloropsis gaditana CCMP... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02540NO16G02540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02540.1NO16G02540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02540.1.cds1NO16G02540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02540.1 ID=NO16G02540.1|Name=NO16G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1641bp
ATGCCCCTACCTTATTTCCCGACGCTGCCACTGCTGCTCCTGCTTGCCGT
AGTCGCCATCTCAGGCTTTGTCCTCCCCGGCATGCCAAATACTGGAATCA
CAAGCAGCTCCAGCAACACCAACGTCTGCACCACTGCCGCTGCCAATACC
ACCACTACGACGGACAATTCCGCCACCGATACTGCATCTCTCAACAGTAT
TCCTGGCTCCGATGTAGGCATGATTCTGCCTATCTCTCGAATTGGTTATG
GAACCTATCGAATCGGCCACAATTCCGAGGAGCAAGCCGGGTCCCTCCGT
CAAGCTTTGCTGCAGGGCATTAACCTTATTGATACTTCCGCCAATTACGG
TAACGGTGAAGCCGAAGAAGTCGTTGGCGAAGTAATGAAAACGCTCATCG
AGGAAGGGGCCATCCAGCGACAGGATGTGGTGATCGTGAGTAAAGCGGGG
TACATTCAAGGACAAAACATGGAACGATACCAAGATGGCACCGTCAAGAC
CCCCGATACCGTTGAAGTTGCTTCCTATCTCGCACATTGCATCCACCCGG
CCTTTCTTCAAGATCAACTTAATCGCTCCTTGGATCGCCTCAACCTGCCC
TCCTTGGACGTATTCCTACTGCACAACCCCGAGTACTATCTCACGCACAA
CATCCCGGCAGGGCGCCGGGATATCAGCGATGCGGCTCTGGAGGACCATC
GAGCGGAGATGGATCGTCGTCTGTTCGAAGCTTTCAAGGCCATGGAAGCA
GAGATTGCTAGCGGTCAAGGTCGTATTGAGAGCTATGGGATCTCGTCCAA
TTCGTTTTCGTTGCCTCCAACACACCCGCACTTTTTGAAGTACGACCACC
TGGTGGAAATGGCACAGAGGGCAGCCAAGGCTGTAGCCTCTCAGGTTGAA
GGAGAGGAAGAGGTGGAAGGTGAGGAGCGTGCGCCAAAGCATCATTTCAG
TACGATTCAACTGCCGGGAAATTTGTTGGAACAAGAGGGGCTGGATCATG
CCGCGGACTGGGCGGCGCAGAATGGGCTGATGGTCTTGATCAACCGTCCT
TTAAACGCCTTCAATGATCGGATGAGTTTGCGGCTGGCTGAATACGAAGA
TACCCGTCCTGCCTATGAGGAAGCACGTAATGTTCTCCTTGCTTATCTCG
ACGCCGTCGCCGAGGACAAGGGCGCAGATAACTTTCGCGTTATCTTTCGC
CCAGAGATCGAAGAAATCGATACTTACCTGCAAAAGCAAGCGGGAGAAGG
TAAAATCAACGTCTTGAGTTGGGAAAATTTGTCGTCGCAGTCAATTGTTC
CTGCCCTCCGTCGGGGCTTGCAAGCGACAGCGAATGCCGAAGGGACGTTT
GACACCCAGGCGATGAGGCTTGCTCAAGACTTCCTGGACGCGTGTAAGCG
GTTTGTGAGCTTTCATAGTGGAACGCATGCGCGGGAGGTGGTGGAGGGGG
AATTGGGTTTCGGGAGGTTGCCGGAGGGGAAGTCTCTGCAGGAATTCGCC
GTGGAATGGCTGCTGGCAAGGGAGGGGGTGACGTGTGTGTTGCTTGGGTG
TAGGAACATGCGGTACGTAACGGATGCGGTGAAGGTAAATGCGATGTTTC
CATCGGTGACAAGCTTTGCGCGCGGGTTAATCAAGATATAG
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protein sequence of NO16G02540.1

>NO16G02540.1-protein ID=NO16G02540.1-protein|Name=NO16G02540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=547bp
MPLPYFPTLPLLLLLAVVAISGFVLPGMPNTGITSSSSNTNVCTTAAANT
TTTTDNSATDTASLNSIPGSDVGMILPISRIGYGTYRIGHNSEEQAGSLR
QALLQGINLIDTSANYGNGEAEEVVGEVMKTLIEEGAIQRQDVVIVSKAG
YIQGQNMERYQDGTVKTPDTVEVASYLAHCIHPAFLQDQLNRSLDRLNLP
SLDVFLLHNPEYYLTHNIPAGRRDISDAALEDHRAEMDRRLFEAFKAMEA
EIASGQGRIESYGISSNSFSLPPTHPHFLKYDHLVEMAQRAAKAVASQVE
GEEEVEGEERAPKHHFSTIQLPGNLLEQEGLDHAADWAAQNGLMVLINRP
LNAFNDRMSLRLAEYEDTRPAYEEARNVLLAYLDAVAEDKGADNFRVIFR
PEIEEIDTYLQKQAGEGKINVLSWENLSSQSIVPALRRGLQATANAEGTF
DTQAMRLAQDFLDACKRFVSFHSGTHAREVVEGELGFGRLPEGKSLQEFA
VEWLLAREGVTCVLLGCRNMRYVTDAVKVNAMFPSVTSFARGLIKI*
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mRNA from alignment at chr16:727391..729031+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02540.1 ID=NO16G02540.1|Name=NO16G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1641bp|location=Sequence derived from alignment at chr16:727391..729031+ (Nannochloropsis oceanica)
ATGCCCCTACCTTATTTCCCGACGCTGCCACTGCTGCTCCTGCTTGCCGT
AGTCGCCATCTCAGGCTTTGTCCTCCCCGGCATGCCAAATACTGGAATCA
CAAGCAGCTCCAGCAACACCAACGTCTGCACCACTGCCGCTGCCAATACC
ACCACTACGACGGACAATTCCGCCACCGATACTGCATCTCTCAACAGTAT
TCCTGGCTCCGATGTAGGCATGATTCTGCCTATCTCTCGAATTGGTTATG
GAACCTATCGAATCGGCCACAATTCCGAGGAGCAAGCCGGGTCCCTCCGT
CAAGCTTTGCTGCAGGGCATTAACCTTATTGATACTTCCGCCAATTACGG
TAACGGTGAAGCCGAAGAAGTCGTTGGCGAAGTAATGAAAACGCTCATCG
AGGAAGGGGCCATCCAGCGACAGGATGTGGTGATCGTGAGTAAAGCGGGG
TACATTCAAGGACAAAACATGGAACGATACCAAGATGGCACCGTCAAGAC
CCCCGATACCGTTGAAGTTGCTTCCTATCTCGCACATTGCATCCACCCGG
CCTTTCTTCAAGATCAACTTAATCGCTCCTTGGATCGCCTCAACCTGCCC
TCCTTGGACGTATTCCTACTGCACAACCCCGAGTACTATCTCACGCACAA
CATCCCGGCAGGGCGCCGGGATATCAGCGATGCGGCTCTGGAGGACCATC
GAGCGGAGATGGATCGTCGTCTGTTCGAAGCTTTCAAGGCCATGGAAGCA
GAGATTGCTAGCGGTCAAGGTCGTATTGAGAGCTATGGGATCTCGTCCAA
TTCGTTTTCGTTGCCTCCAACACACCCGCACTTTTTGAAGTACGACCACC
TGGTGGAAATGGCACAGAGGGCAGCCAAGGCTGTAGCCTCTCAGGTTGAA
GGAGAGGAAGAGGTGGAAGGTGAGGAGCGTGCGCCAAAGCATCATTTCAG
TACGATTCAACTGCCGGGAAATTTGTTGGAACAAGAGGGGCTGGATCATG
CCGCGGACTGGGCGGCGCAGAATGGGCTGATGGTCTTGATCAACCGTCCT
TTAAACGCCTTCAATGATCGGATGAGTTTGCGGCTGGCTGAATACGAAGA
TACCCGTCCTGCCTATGAGGAAGCACGTAATGTTCTCCTTGCTTATCTCG
ACGCCGTCGCCGAGGACAAGGGCGCAGATAACTTTCGCGTTATCTTTCGC
CCAGAGATCGAAGAAATCGATACTTACCTGCAAAAGCAAGCGGGAGAAGG
TAAAATCAACGTCTTGAGTTGGGAAAATTTGTCGTCGCAGTCAATTGTTC
CTGCCCTCCGTCGGGGCTTGCAAGCGACAGCGAATGCCGAAGGGACGTTT
GACACCCAGGCGATGAGGCTTGCTCAAGACTTCCTGGACGCGTGTAAGCG
GTTTGTGAGCTTTCATAGTGGAACGCATGCGCGGGAGGTGGTGGAGGGGG
AATTGGGTTTCGGGAGGTTGCCGGAGGGGAAGTCTCTGCAGGAATTCGCC
GTGGAATGGCTGCTGGCAAGGGAGGGGGTGACGTGTGTGTTGCTTGGGTG
TAGGAACATGCGGTACGTAACGGATGCGGTGAAGGTAAATGCGATGTTTC
CATCGGTGACAAGCTTTGCGCGCGGGTTAATCAAGATATAG
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Coding sequence (CDS) from alignment at chr16:727391..729031+

>NO16G02540.1 ID=NO16G02540.1|Name=NO16G02540.1|organism=Nannochloropsis oceanica|type=CDS|length=1641bp|location=Sequence derived from alignment at chr16:727391..729031+ (Nannochloropsis oceanica)
ATGCCCCTACCTTATTTCCCGACGCTGCCACTGCTGCTCCTGCTTGCCGT
AGTCGCCATCTCAGGCTTTGTCCTCCCCGGCATGCCAAATACTGGAATCA
CAAGCAGCTCCAGCAACACCAACGTCTGCACCACTGCCGCTGCCAATACC
ACCACTACGACGGACAATTCCGCCACCGATACTGCATCTCTCAACAGTAT
TCCTGGCTCCGATGTAGGCATGATTCTGCCTATCTCTCGAATTGGTTATG
GAACCTATCGAATCGGCCACAATTCCGAGGAGCAAGCCGGGTCCCTCCGT
CAAGCTTTGCTGCAGGGCATTAACCTTATTGATACTTCCGCCAATTACGG
TAACGGTGAAGCCGAAGAAGTCGTTGGCGAAGTAATGAAAACGCTCATCG
AGGAAGGGGCCATCCAGCGACAGGATGTGGTGATCGTGAGTAAAGCGGGG
TACATTCAAGGACAAAACATGGAACGATACCAAGATGGCACCGTCAAGAC
CCCCGATACCGTTGAAGTTGCTTCCTATCTCGCACATTGCATCCACCCGG
CCTTTCTTCAAGATCAACTTAATCGCTCCTTGGATCGCCTCAACCTGCCC
TCCTTGGACGTATTCCTACTGCACAACCCCGAGTACTATCTCACGCACAA
CATCCCGGCAGGGCGCCGGGATATCAGCGATGCGGCTCTGGAGGACCATC
GAGCGGAGATGGATCGTCGTCTGTTCGAAGCTTTCAAGGCCATGGAAGCA
GAGATTGCTAGCGGTCAAGGTCGTATTGAGAGCTATGGGATCTCGTCCAA
TTCGTTTTCGTTGCCTCCAACACACCCGCACTTTTTGAAGTACGACCACC
TGGTGGAAATGGCACAGAGGGCAGCCAAGGCTGTAGCCTCTCAGGTTGAA
GGAGAGGAAGAGGTGGAAGGTGAGGAGCGTGCGCCAAAGCATCATTTCAG
TACGATTCAACTGCCGGGAAATTTGTTGGAACAAGAGGGGCTGGATCATG
CCGCGGACTGGGCGGCGCAGAATGGGCTGATGGTCTTGATCAACCGTCCT
TTAAACGCCTTCAATGATCGGATGAGTTTGCGGCTGGCTGAATACGAAGA
TACCCGTCCTGCCTATGAGGAAGCACGTAATGTTCTCCTTGCTTATCTCG
ACGCCGTCGCCGAGGACAAGGGCGCAGATAACTTTCGCGTTATCTTTCGC
CCAGAGATCGAAGAAATCGATACTTACCTGCAAAAGCAAGCGGGAGAAGG
TAAAATCAACGTCTTGAGTTGGGAAAATTTGTCGTCGCAGTCAATTGTTC
CTGCCCTCCGTCGGGGCTTGCAAGCGACAGCGAATGCCGAAGGGACGTTT
GACACCCAGGCGATGAGGCTTGCTCAAGACTTCCTGGACGCGTGTAAGCG
GTTTGTGAGCTTTCATAGTGGAACGCATGCGCGGGAGGTGGTGGAGGGGG
AATTGGGTTTCGGGAGGTTGCCGGAGGGGAAGTCTCTGCAGGAATTCGCC
GTGGAATGGCTGCTGGCAAGGGAGGGGGTGACGTGTGTGTTGCTTGGGTG
TAGGAACATGCGGTACGTAACGGATGCGGTGAAGGTAAATGCGATGTTTC
CATCGGTGACAAGCTTTGCGCGCGGGTTAATCAAGATATAG
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Synonyms
Publications