NO16G02520.1, NO16G02520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02520.1
Unique NameNO16G02520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1771
Alignment locationchr16:725440..727210 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:725440..727210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02520.1 vs.
Match: EWM23866.1 (mps1 binder-like protein [Nannochloropsis gaditana]; EWM23867.1 mps1 binder-like protein [Nannochloropsis gaditana])

HSP 1 Score: 411.8 bits (1057), Expect = 2.600e-111
Identity = 248/418 (59.33%), Postives = 295/418 (70.57%), Query Frame = 0 
Query:    1 MWPSGKFGGSNKPPSSLLSSPVSCANSRTMSFDSSIDSSTSTSTSSGSSSNNSSLSSSSSSTSSSSRGLLQSL--SFLPSLFSSSSGYGGGAGARDTFKPIKEHTSGKRISLHRYSQATLATGITRAAVACPASEDPDEWLAVHTVDAYNELALLYGIMHGKCLASNESCAVMNAGPEYEYLWADKNLHKRPTKVSAKEYVGLLLEWVEEQLNDPAVFPATTDVAFPRTFRASVAKIFTRMFRVYAHIYLTHVTDMERAGAMSHLNSCFKHFIFCALEYDLVAERELAPLQVLIRSILIEDARRHAAEHKSFPSPSSFGA-----LTRTSLVAASATHSRHQARLQRSGSNSVNASSRSLSSSGSSSSSSSLRPGKGGPLSSTPMPTPRKERASFPSSFFSLSSSSSSPSSLSSSSSS 412
            MWP+ + G    P  S  +S      S   + D  ID+STST TSS           SSS +S+SSRGLLQS+  SFL  L    S Y  GAGA+ TFKPIKEHT  KR+SLHRYSQATLATGITRAAVACP +EDP+EWLAVHTVDAYNELALLYG++H KC  S ESC+VMNAGPE+EYLWAD +LHK+PTKVSAK+YV LLL WVE+QL+DPAVFP +T++AFPRTF+ +VAKIFTR+FRVY HIYL H  D+E+AGAMSHLNSCFKHFIFC LE+DLV +REL PL +LIR+I+ ED R+ AA   S P+ SS  A       R    A SA+HS HQAR+QR  SN           SG S++S +LRP      +  PMP+ R+ER+SFPS  F  S S S+ SS SS S+S
Sbjct:    1 MWPTVRTGAKASPSDSFSTSMDLSDRSSGSASDCGIDNSTSTRTSS-----------SSSISSTSSRGLLQSIFPSFL-GLLPQLSSYSAGAGAKGTFKPIKEHTGNKRVSLHRYSQATLATGITRAAVACPPTEDPNEWLAVHTVDAYNELALLYGVIHAKCSPSKESCSVMNAGPEFEYLWADSDLHKKPTKVSAKDYVNLLLSWVEKQLHDPAVFPPSTNIAFPRTFKVTVAKIFTRLFRVYGHIYLVHAQDVEQAGAMSHLNSCFKHFIFCVLEFDLVEDRELVPLHLLIRNIVAEDTRKQAAARPSIPAVSSSSANRGLGWGRPCQAAVSASHSPHQARMQRLRSN-----------SGHSTNSCNLRPANS---AQKPMPSTRQERSSFPSPLFPSSPSPSTSSSFSSPSTS 392
The following BLAST results are available for this feature:
BLAST of NO16G02520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23866.12.600e-11159.33mps1 binder-like protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02520NO16G02520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02520.1NO16G02520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02520.1.cds1NO16G02520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02520.1 ID=NO16G02520.1|Name=NO16G02520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1771bp
GTTTCACACGAGCAGACTGCCCTCTTGCTTCGCCTTGGTCATGTCTCAGC
CTGTCTGTGGCGTGTACGTCACTCTGTGCCCCATCAACCGCAACCGCACT
CACTGAAGAGACATGCATCACTTAAAGGGACACTCCTTGCGGTCGTGCGT
CCTGCTGTTGTTCCCCTGGCCCATTTATTTAATTTATTCATTTGATCATT
CCCTATCAAATCAGAGGCTACGCACACAGTTATGTGGCCATCGGGTAAGT
TTGGAGGAAGCAACAAGCCTCCATCGTCCCTTTTGTCGTCCCCTGTCTCT
TGTGCCAACAGCAGGACCATGAGCTTCGATAGCAGCATTGATAGCAGCAC
CAGCACGAGCACCAGCAGTGGCAGCAGTAGCAACAACTCGAGCCTCTCTT
CCTCCTCTTCCTCCACCTCGTCGTCGTCCCGCGGGCTCCTTCAGTCCTTA
TCCTTTCTTCCCAGTCTCTTCTCCTCCTCTAGCGGATACGGCGGTGGCGC
TGGGGCCCGAGACACGTTCAAGCCAATCAAGGAGCACACCAGTGGAAAGC
GCATCTCGCTCCACCGCTACTCCCAAGCCACCCTCGCAACCGGCATCACC
CGAGCCGCCGTCGCCTGCCCCGCCTCCGAAGACCCGGACGAATGGCTGGC
CGTGCACACGGTGGATGCCTACAACGAGCTGGCATTGCTATATGGGATTA
TGCATGGAAAATGCCTGGCGAGCAACGAGAGCTGCGCGGTTATGAATGCA
GGACCCGAGTACGAGTATCTGTGGGCGGACAAGAATCTGCACAAGAGACC
AACCAAGGTCTCGGCGAAGGAGTATGTGGGCTTACTTTTGGAGTGGGTGG
AAGAGCAGTTGAATGATCCAGCCGTCTTTCCTGCAACGACGGATGTGGCC
TTCCCGAGGACGTTCAGAGCGTCCGTGGCTAAGATTTTCACGCGAATGTT
TCGAGTGTATGCCCACATTTATTTGACCCACGTTACAGACATGGAACGTG
CAGGGGCCATGAGCCATCTGAACTCGTGTTTCAAGCACTTTATTTTTTGT
GCGCTTGAGTATGACTTGGTGGCGGAACGGGAGCTGGCGCCTCTGCAAGT
ATTGATCCGTTCCATACTAATAGAAGACGCTCGAAGGCATGCAGCAGAGC
ACAAATCCTTCCCTTCTCCTTCATCTTTTGGCGCGTTAACTCGCACATCC
TTGGTGGCTGCTTCGGCGACGCATTCGCGGCATCAGGCAAGGCTGCAGCG
CTCGGGGAGTAATAGTGTGAATGCCAGCAGCCGCAGCCTCAGCAGCAGCG
GCAGCAGCAGCAGCAGCAGTAGCTTGAGACCAGGCAAGGGCGGACCGTTG
TCGTCAACGCCGATGCCAACACCACGGAAGGAGAGGGCTTCCTTTCCTTC
TTCCTTCTTTTCATTGTCCTCTTCGTCCTCCTCTCCTTCCTCCTTGTCCT
CGTCATCTTCCTCCAAAGCTTGAAGACCACAGCACAGAAACAATACCAGC
AGTAGCAGCGGCTACAGACCTCGCAAGGGCAGTGGCAGCAACAAGCTCAA
CATTATGATGGCACGAGAATTCTATCCAAGAAGTTCCAGGGCGGGACCAT
AAAAGACGGCTGAAAACTTCTTGCGATTCATTCAAATATGCGCCACGGCC
TTTACCAGGAAGCTTAACAAAGCATGATATGGCAAAATGGGAATGGGAAA
AATCCTTTATTTGTACATATTCGAACAATAAATTAACGGACAAAGAAAGA
AAGCGTTCATTGTGAGGAGAT
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protein sequence of NO16G02520.1

>NO16G02520.1-protein ID=NO16G02520.1-protein|Name=NO16G02520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MWPSGKFGGSNKPPSSLLSSPVSCANSRTMSFDSSIDSSTSTSTSSGSSS
NNSSLSSSSSSTSSSSRGLLQSLSFLPSLFSSSSGYGGGAGARDTFKPIK
EHTSGKRISLHRYSQATLATGITRAAVACPASEDPDEWLAVHTVDAYNEL
ALLYGIMHGKCLASNESCAVMNAGPEYEYLWADKNLHKRPTKVSAKEYVG
LLLEWVEEQLNDPAVFPATTDVAFPRTFRASVAKIFTRMFRVYAHIYLTH
VTDMERAGAMSHLNSCFKHFIFCALEYDLVAERELAPLQVLIRSILIEDA
RRHAAEHKSFPSPSSFGALTRTSLVAASATHSRHQARLQRSGSNSVNASS
RSLSSSGSSSSSSSLRPGKGGPLSSTPMPTPRKERASFPSSFFSLSSSSS
SPSSLSSSSSSKA*
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mRNA from alignment at chr16:725440..727210+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02520.1 ID=NO16G02520.1|Name=NO16G02520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1771bp|location=Sequence derived from alignment at chr16:725440..727210+ (Nannochloropsis oceanica)
GTTTCACACGAGCAGACTGCCCTCTTGCTTCGCCTTGGTCATGTCTCAGC
CTGTCTGTGGCGTGTACGTCACTCTGTGCCCCATCAACCGCAACCGCACT
CACTGAAGAGACATGCATCACTTAAAGGGACACTCCTTGCGGTCGTGCGT
CCTGCTGTTGTTCCCCTGGCCCATTTATTTAATTTATTCATTTGATCATT
CCCTATCAAATCAGAGGCTACGCACACAGTTATGTGGCCATCGGGTAAGT
TTGGAGGAAGCAACAAGCCTCCATCGTCCCTTTTGTCGTCCCCTGTCTCT
TGTGCCAACAGCAGGACCATGAGCTTCGATAGCAGCATTGATAGCAGCAC
CAGCACGAGCACCAGCAGTGGCAGCAGTAGCAACAACTCGAGCCTCTCTT
CCTCCTCTTCCTCCACCTCGTCGTCGTCCCGCGGGCTCCTTCAGTCCTTA
TCCTTTCTTCCCAGTCTCTTCTCCTCCTCTAGCGGATACGGCGGTGGCGC
TGGGGCCCGAGACACGTTCAAGCCAATCAAGGAGCACACCAGTGGAAAGC
GCATCTCGCTCCACCGCTACTCCCAAGCCACCCTCGCAACCGGCATCACC
CGAGCCGCCGTCGCCTGCCCCGCCTCCGAAGACCCGGACGAATGGCTGGC
CGTGCACACGGTGGATGCCTACAACGAGCTGGCATTGCTATATGGGATTA
TGCATGGAAAATGCCTGGCGAGCAACGAGAGCTGCGCGGTTATGAATGCA
GGACCCGAGTACGAGTATCTGTGGGCGGACAAGAATCTGCACAAGAGACC
AACCAAGGTCTCGGCGAAGGAGTATGTGGGCTTACTTTTGGAGTGGGTGG
AAGAGCAGTTGAATGATCCAGCCGTCTTTCCTGCAACGACGGATGTGGCC
TTCCCGAGGACGTTCAGAGCGTCCGTGGCTAAGATTTTCACGCGAATGTT
TCGAGTGTATGCCCACATTTATTTGACCCACGTTACAGACATGGAACGTG
CAGGGGCCATGAGCCATCTGAACTCGTGTTTCAAGCACTTTATTTTTTGT
GCGCTTGAGTATGACTTGGTGGCGGAACGGGAGCTGGCGCCTCTGCAAGT
ATTGATCCGTTCCATACTAATAGAAGACGCTCGAAGGCATGCAGCAGAGC
ACAAATCCTTCCCTTCTCCTTCATCTTTTGGCGCGTTAACTCGCACATCC
TTGGTGGCTGCTTCGGCGACGCATTCGCGGCATCAGGCAAGGCTGCAGCG
CTCGGGGAGTAATAGTGTGAATGCCAGCAGCCGCAGCCTCAGCAGCAGCG
GCAGCAGCAGCAGCAGCAGTAGCTTGAGACCAGGCAAGGGCGGACCGTTG
TCGTCAACGCCGATGCCAACACCACGGAAGGAGAGGGCTTCCTTTCCTTC
TTCCTTCTTTTCATTGTCCTCTTCGTCCTCCTCTCCTTCCTCCTTGTCCT
CGTCATCTTCCTCCAAAGCTTGAAGACCACAGCACAGAAACAATACCAGC
AGTAGCAGCGGCTACAGACCTCGCAAGGGCAGTGGCAGCAACAAGCTCAA
CATTATGATGGCACGAGAATTCTATCCAAGAAGTTCCAGGGCGGGACCAT
AAAAGACGGCTGAAAACTTCTTGCGATTCATTCAAATATGCGCCACGGCC
TTTACCAGGAAGCTTAACAAAGCATGATATGGCAAAATGGGAATGGGAAA
AATCCTTTATTTGTACATATTCGAACAATAAATTAACGGACAAAGAAAGA
AAGCGTTCATTGTGAGGAGAT
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Coding sequence (CDS) from alignment at chr16:725440..727210+

>NO16G02520.1 ID=NO16G02520.1|Name=NO16G02520.1|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at chr16:725440..727210+ (Nannochloropsis oceanica)
ATGTGGCCATCGGGTAAGTTTGGAGGAAGCAACAAGCCTCCATCGTCCCT
TTTGTCGTCCCCTGTCTCTTGTGCCAACAGCAGGACCATGAGCTTCGATA
GCAGCATTGATAGCAGCACCAGCACGAGCACCAGCAGTGGCAGCAGTAGC
AACAACTCGAGCCTCTCTTCCTCCTCTTCCTCCACCTCGTCGTCGTCCCG
CGGGCTCCTTCAGTCCTTATCCTTTCTTCCCAGTCTCTTCTCCTCCTCTA
GCGGATACGGCGGTGGCGCTGGGGCCCGAGACACGTTCAAGCCAATCAAG
GAGCACACCAGTGGAAAGCGCATCTCGCTCCACCGCTACTCCCAAGCCAC
CCTCGCAACCGGCATCACCCGAGCCGCCGTCGCCTGCCCCGCCTCCGAAG
ACCCGGACGAATGGCTGGCCGTGCACACGGTGGATGCCTACAACGAGCTG
GCATTGCTATATGGGATTATGCATGGAAAATGCCTGGCGAGCAACGAGAG
CTGCGCGGTTATGAATGCAGGACCCGAGTACGAGTATCTGTGGGCGGACA
AGAATCTGCACAAGAGACCAACCAAGGTCTCGGCGAAGGAGTATGTGGGC
TTACTTTTGGAGTGGGTGGAAGAGCAGTTGAATGATCCAGCCGTCTTTCC
TGCAACGACGGATGTGGCCTTCCCGAGGACGTTCAGAGCGTCCGTGGCTA
AGATTTTCACGCGAATGTTTCGAGTGTATGCCCACATTTATTTGACCCAC
GTTACAGACATGGAACGTGCAGGGGCCATGAGCCATCTGAACTCGTGTTT
CAAGCACTTTATTTTTTGTGCGCTTGAGTATGACTTGGTGGCGGAACGGG
AGCTGGCGCCTCTGCAAGTATTGATCCGTTCCATACTAATAGAAGACGCT
CGAAGGCATGCAGCAGAGCACAAATCCTTCCCTTCTCCTTCATCTTTTGG
CGCGTTAACTCGCACATCCTTGGTGGCTGCTTCGGCGACGCATTCGCGGC
ATCAGGCAAGGCTGCAGCGCTCGGGGAGTAATAGTGTGAATGCCAGCAGC
CGCAGCCTCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGTAGCTTGAGACC
AGGCAAGGGCGGACCGTTGTCGTCAACGCCGATGCCAACACCACGGAAGG
AGAGGGCTTCCTTTCCTTCTTCCTTCTTTTCATTGTCCTCTTCGTCCTCC
TCTCCTTCCTCCTTGTCCTCGTCATCTTCCTCCAAAGCTTGA
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Synonyms
Publications