NO16G02460.1, NO16G02460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02460.1
Unique NameNO16G02460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2250
Alignment locationchr16:707342..709591 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:707342..709591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO16G02460.1 vs.
Match: EWM23941.1 (tyrosine kinase, partial [Nannochloropsis gaditana])

HSP 1 Score: 1092.0 bits (2823), Expect = 0.000e+0
Identity = 528/678 (77.88%), Postives = 583/678 (85.99%), Query Frame = 0
Query:   75 KVPSFATKAEAVEFIKAHCRVGSNRDHRLYQHIFTLLTSWEQLNKYLVVKITHYDRLLGE--SATMAASPSLDPTGNVWLRGPPAEDPDLNVGGVVMALDQRLSLPFHQVLSAPSTINTLKYLFEHMRCGIFVKIKAGQLVMFVPFANDAYANTWAGEMEFDSADGTLETYFQEKMKGGFRKENILPNVAEWWANGNMIDNEKVKAGTDKRFGQVWGDFFFCQLKEMLQAVCQERAVPDCEFFINKRDYPHLKTHHDTNSSSSSHDREAGA---VTAVEPYGFIFGKDDRDPAQDVPLARHAYSSYAPVASFYISSRFADIPWPTTEDWEAATGRVYPHTFMHRFDAETDELVVENEPRDLFTEANFQKFSQVEWRDKVPTAFFRGTATGGGTKVETNQRLKLAHLSHLWSKDGFYNGQENEDFSVPYLDAALTGWNMRDKKIASEPMSFIKKKDFAFKVGKANFVPIYEQARFKYLIYVEGHCAACRYSFLMRLGSVILKVESRCVADEMWYFPLLRPFVDHVPVKADMSDLDEQIQWCREHDAKCQVIAANARRIYDAYCSKEGILDYLQLITHKIAARWHRVPSWWQPSPLGCPRPREGGGGGAGGGRCSCRRCNEDRERISQAAEARARLLEERKARAVQRREAEEASRKRVRREAEEAAGGGEDEEDDEYDGN 748
            KVPSF +K EA+ FIK HCRVGSN DH  YQH+F+LLTSWE LNKYLV KI +YD+LLG+       +S  +D + NVWLR PP +   L+V GVV ALDQRL+L  H+VLS+PSTINTLKYLFEHMRCGIFVKIKAGQLVMFVPFAND+Y NTWA EMEFDSADGT+ETY+QEKMKGGFRKENILPNVAEWWANGNMIDNEKV+AGTDKRFGQVWGDFF CQLKEMLQAVCQER V DCEFFINKRDYP LKTH     + +   R   +   VTAVEPYGFIFGKDDRD  QDVPL RHAYSSYAP+AS Y+SSRFADIPWPTTEDWEAATGRVYPHTFMHRFDAETDELVVENEPRDLFTEANFQKFSQV W DK PTAFFRGTATGGGT +ETNQRL+LAHLS+LWS+DGFYNG+ENEDFS PYLDA LTGWNMRDKKIASEPM+FIKKKDFAFKVGK+NFVPIYEQARFKYL+YVEGHCAACRYSFLMRLGSVIL+V+S+CVAD+MWYFPLLRPFVDHVPVK+D+SDLDEQI+WCR+HD++C+ IAANARR+YD YCSKEGILDYLQL+THKIAARWHRVPSWWQPSPLGC RPR  G  G G  RCSCRRCNEDR+R  QA + +AR  EERK RAV+RR ++ ASRK+ R      A  G+D   +   G+
Sbjct:    1 KVPSFTSKKEALAFIKVHCRVGSNPDHSHYQHMFSLLTSWEDLNKYLVAKILYYDKLLGKVSKGPSTSSVGVDLSQNVWLRSPPEDFVGLDVKGVVAALDQRLNLSLHRVLSSPSTINTLKYLFEHMRCGIFVKIKAGQLVMFVPFANDSYTNTWASEMEFDSADGTMETYYQEKMKGGFRKENILPNVAEWWANGNMIDNEKVRAGTDKRFGQVWGDFFLCQLKEMLQAVCQERKVADCEFFINKRDYPQLKTHLRKARTLTDEPRPQDSPAPVTAVEPYGFIFGKDDRDANQDVPLGRHAYSSYAPIASLYVSSRFADIPWPTTEDWEAATGRVYPHTFMHRFDAETDELVVENEPRDLFTEANFQKFSQVPWDDKTPTAFFRGTATGGGTTIETNQRLRLAHLSYLWSQDGFYNGRENEDFSAPYLDAKLTGWNMRDKKIASEPMTFIKKKDFAFKVGKSNFVPIYEQARFKYLVYVEGHCAACRYSFLMRLGSVILRVDSQCVADQMWYFPLLRPFVDHVPVKSDLSDLDEQIKWCRDHDSECRQIAANARRLYDTYCSKEGILDYLQLVTHKIAARWHRVPSWWQPSPLGCQRPR--GPRGGGDDRCSCRRCNEDRKRTHQAGDWKARQHEERKIRAVERRASKMASRKKSR--GARGAEAGQDTSTETMSGS 674          
The following BLAST results are available for this feature:
BLAST of NO16G02460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23941.10.000e+077.88tyrosine kinase, partial [Nannochloropsis gaditana... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02460NO16G02460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02460.1NO16G02460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02460.1.cds1NO16G02460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02460.1 ID=NO16G02460.1|Name=NO16G02460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2250bp
ATGCCGCCCAAGGGGGCCAAGAACGCAGACGGCCAGTCCAAGTCCATCGC
CTCTGCAACCTCTACTTCTCCGTCGACGCCTTCCTCAAGAGGCATGGTAG
CTCCTATGCGCAAGTTCTCACATGTGTGGAAAGCGCCGGAGTCGACTACG
TGGCGGGGAATTTACCGTTGGGAGGATGAGGAGCATGAGGGGTGGAAGGC
GGCCCTGACCCAATTCCCGTACAAAGTGCCTTCTTTTGCGACCAAAGCAG
AGGCCGTAGAGTTCATCAAAGCGCACTGCCGCGTGGGCAGCAACCGGGAT
CACCGCCTGTATCAGCACATCTTCACGCTGCTCACGAGCTGGGAGCAGCT
CAATAAATACTTAGTGGTCAAGATCACGCATTACGACCGCCTCCTGGGCG
AATCTGCTACCATGGCGGCGTCGCCGTCCCTAGACCCGACCGGAAACGTA
TGGTTAAGAGGTCCGCCCGCGGAGGATCCCGATTTGAATGTCGGTGGCGT
GGTGATGGCGCTGGACCAGCGATTGAGCCTCCCTTTCCATCAGGTGCTCT
CGGCACCGTCCACGATCAACACTCTCAAGTACCTGTTCGAGCACATGCGG
TGCGGCATCTTCGTCAAGATTAAGGCAGGCCAGCTGGTCATGTTCGTACC
CTTCGCCAACGACGCCTATGCCAACACTTGGGCAGGTGAGATGGAGTTCG
ATTCGGCGGACGGCACGTTGGAGACGTACTTCCAGGAGAAGATGAAGGGC
GGCTTCCGCAAGGAGAACATCCTGCCCAACGTGGCGGAGTGGTGGGCGAA
CGGGAACATGATCGACAACGAGAAGGTCAAGGCGGGCACCGACAAGCGTT
TCGGGCAGGTCTGGGGCGACTTCTTCTTCTGCCAGCTCAAAGAGATGCTA
CAGGCAGTCTGTCAGGAGAGGGCTGTGCCCGATTGCGAGTTCTTCATCAA
CAAACGCGACTACCCTCACCTCAAGACGCACCATGACACCAACAGCAGCA
GCAGCAGCCATGACAGGGAAGCAGGCGCTGTGACGGCCGTGGAGCCTTAC
GGTTTTATCTTCGGAAAGGATGACCGGGACCCCGCGCAAGACGTGCCCCT
GGCCCGGCACGCCTATTCCTCGTACGCGCCCGTGGCCTCCTTCTACATCT
CCTCCCGCTTCGCCGACATTCCCTGGCCCACCACCGAGGACTGGGAGGCC
GCCACGGGCCGCGTGTACCCCCACACCTTCATGCACCGCTTCGACGCCGA
GACTGACGAGCTTGTGGTGGAGAACGAGCCCCGCGACCTCTTCACCGAGG
CCAACTTCCAGAAGTTTAGTCAGGTCGAGTGGCGGGACAAGGTGCCCACA
GCTTTCTTCCGGGGCACGGCCACAGGCGGCGGTACCAAGGTCGAAACTAA
TCAGCGCCTAAAACTCGCCCACCTCAGCCACCTGTGGAGCAAGGATGGGT
TCTACAACGGGCAAGAGAACGAGGACTTCTCTGTGCCCTACCTGGACGCG
GCGCTGACAGGCTGGAACATGCGCGACAAAAAGATTGCCAGCGAGCCCAT
GAGCTTCATTAAGAAAAAAGACTTCGCCTTCAAGGTCGGAAAGGCCAACT
TCGTACCCATCTACGAACAGGCGCGCTTTAAATACCTGATCTACGTGGAG
GGCCACTGCGCTGCTTGCCGCTACTCCTTCCTCATGCGCCTGGGCTCGGT
GATCCTCAAAGTTGAGTCCCGCTGCGTGGCCGATGAGATGTGGTACTTCC
CCCTCCTCAGGCCCTTTGTTGACCACGTGCCCGTCAAGGCCGACATGTCG
GACCTGGACGAGCAGATCCAGTGGTGCCGCGAGCACGACGCCAAGTGCCA
GGTGATTGCAGCCAACGCCCGCCGCATTTACGATGCCTACTGTTCCAAGG
AGGGCATTTTGGACTACCTGCAGCTCATCACCCACAAGATTGCTGCGCGC
TGGCACCGTGTGCCTTCCTGGTGGCAGCCATCTCCCCTCGGGTGCCCGCG
TCCGCGGGAGGGTGGGGGTGGGGGGGCAGGAGGAGGCCGCTGCAGCTGCC
GGCGGTGCAACGAAGACCGCGAACGGATCAGCCAGGCTGCGGAGGCCAGG
GCGCGCTTGCTGGAAGAACGCAAGGCACGTGCCGTCCAACGCCGGGAAGC
CGAGGAGGCGTCTCGCAAACGTGTCCGCAGAGAGGCAGAAGAAGCTGCAG
GCGGGGGCGAGGATGAGGAAGACGACGAATACGATGGAAATTTGGCATAA
back to top

protein sequence of NO16G02460.1

>NO16G02460.1-protein ID=NO16G02460.1-protein|Name=NO16G02460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=750bp
MPPKGAKNADGQSKSIASATSTSPSTPSSRGMVAPMRKFSHVWKAPESTT
WRGIYRWEDEEHEGWKAALTQFPYKVPSFATKAEAVEFIKAHCRVGSNRD
HRLYQHIFTLLTSWEQLNKYLVVKITHYDRLLGESATMAASPSLDPTGNV
WLRGPPAEDPDLNVGGVVMALDQRLSLPFHQVLSAPSTINTLKYLFEHMR
CGIFVKIKAGQLVMFVPFANDAYANTWAGEMEFDSADGTLETYFQEKMKG
GFRKENILPNVAEWWANGNMIDNEKVKAGTDKRFGQVWGDFFFCQLKEML
QAVCQERAVPDCEFFINKRDYPHLKTHHDTNSSSSSHDREAGAVTAVEPY
GFIFGKDDRDPAQDVPLARHAYSSYAPVASFYISSRFADIPWPTTEDWEA
ATGRVYPHTFMHRFDAETDELVVENEPRDLFTEANFQKFSQVEWRDKVPT
AFFRGTATGGGTKVETNQRLKLAHLSHLWSKDGFYNGQENEDFSVPYLDA
ALTGWNMRDKKIASEPMSFIKKKDFAFKVGKANFVPIYEQARFKYLIYVE
GHCAACRYSFLMRLGSVILKVESRCVADEMWYFPLLRPFVDHVPVKADMS
DLDEQIQWCREHDAKCQVIAANARRIYDAYCSKEGILDYLQLITHKIAAR
WHRVPSWWQPSPLGCPRPREGGGGGAGGGRCSCRRCNEDRERISQAAEAR
ARLLEERKARAVQRREAEEASRKRVRREAEEAAGGGEDEEDDEYDGNLA*
back to top

mRNA from alignment at chr16:707342..709591+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02460.1 ID=NO16G02460.1|Name=NO16G02460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2250bp|location=Sequence derived from alignment at chr16:707342..709591+ (Nannochloropsis oceanica)
ATGCCGCCCAAGGGGGCCAAGAACGCAGACGGCCAGTCCAAGTCCATCGC CTCTGCAACCTCTACTTCTCCGTCGACGCCTTCCTCAAGAGGCATGGTAG CTCCTATGCGCAAGTTCTCACATGTGTGGAAAGCGCCGGAGTCGACTACG TGGCGGGGAATTTACCGTTGGGAGGATGAGGAGCATGAGGGGTGGAAGGC GGCCCTGACCCAATTCCCGTACAAAGTGCCTTCTTTTGCGACCAAAGCAG AGGCCGTAGAGTTCATCAAAGCGCACTGCCGCGTGGGCAGCAACCGGGAT CACCGCCTGTATCAGCACATCTTCACGCTGCTCACGAGCTGGGAGCAGCT CAATAAATACTTAGTGGTCAAGATCACGCATTACGACCGCCTCCTGGGCG AATCTGCTACCATGGCGGCGTCGCCGTCCCTAGACCCGACCGGAAACGTA TGGTTAAGAGGTCCGCCCGCGGAGGATCCCGATTTGAATGTCGGTGGCGT GGTGATGGCGCTGGACCAGCGATTGAGCCTCCCTTTCCATCAGGTGCTCT CGGCACCGTCCACGATCAACACTCTCAAGTACCTGTTCGAGCACATGCGG TGCGGCATCTTCGTCAAGATTAAGGCAGGCCAGCTGGTCATGTTCGTACC CTTCGCCAACGACGCCTATGCCAACACTTGGGCAGGTGAGATGGAGTTCG ATTCGGCGGACGGCACGTTGGAGACGTACTTCCAGGAGAAGATGAAGGGC GGCTTCCGCAAGGAGAACATCCTGCCCAACGTGGCGGAGTGGTGGGCGAA CGGGAACATGATCGACAACGAGAAGGTCAAGGCGGGCACCGACAAGCGTT TCGGGCAGGTCTGGGGCGACTTCTTCTTCTGCCAGCTCAAAGAGATGCTA CAGGCAGTCTGTCAGGAGAGGGCTGTGCCCGATTGCGAGTTCTTCATCAA CAAACGCGACTACCCTCACCTCAAGACGCACCATGACACCAACAGCAGCA GCAGCAGCCATGACAGGGAAGCAGGCGCTGTGACGGCCGTGGAGCCTTAC GGTTTTATCTTCGGAAAGGATGACCGGGACCCCGCGCAAGACGTGCCCCT GGCCCGGCACGCCTATTCCTCGTACGCGCCCGTGGCCTCCTTCTACATCT CCTCCCGCTTCGCCGACATTCCCTGGCCCACCACCGAGGACTGGGAGGCC GCCACGGGCCGCGTGTACCCCCACACCTTCATGCACCGCTTCGACGCCGA GACTGACGAGCTTGTGGTGGAGAACGAGCCCCGCGACCTCTTCACCGAGG CCAACTTCCAGAAGTTTAGTCAGGTCGAGTGGCGGGACAAGGTGCCCACA GCTTTCTTCCGGGGCACGGCCACAGGCGGCGGTACCAAGGTCGAAACTAA TCAGCGCCTAAAACTCGCCCACCTCAGCCACCTGTGGAGCAAGGATGGGT TCTACAACGGGCAAGAGAACGAGGACTTCTCTGTGCCCTACCTGGACGCG GCGCTGACAGGCTGGAACATGCGCGACAAAAAGATTGCCAGCGAGCCCAT GAGCTTCATTAAGAAAAAAGACTTCGCCTTCAAGGTCGGAAAGGCCAACT TCGTACCCATCTACGAACAGGCGCGCTTTAAATACCTGATCTACGTGGAG GGCCACTGCGCTGCTTGCCGCTACTCCTTCCTCATGCGCCTGGGCTCGGT GATCCTCAAAGTTGAGTCCCGCTGCGTGGCCGATGAGATGTGGTACTTCC CCCTCCTCAGGCCCTTTGTTGACCACGTGCCCGTCAAGGCCGACATGTCG GACCTGGACGAGCAGATCCAGTGGTGCCGCGAGCACGACGCCAAGTGCCA GGTGATTGCAGCCAACGCCCGCCGCATTTACGATGCCTACTGTTCCAAGG AGGGCATTTTGGACTACCTGCAGCTCATCACCCACAAGATTGCTGCGCGC TGGCACCGTGTGCCTTCCTGGTGGCAGCCATCTCCCCTCGGGTGCCCGCG TCCGCGGGAGGGTGGGGGTGGGGGGGCAGGAGGAGGCCGCTGCAGCTGCC GGCGGTGCAACGAAGACCGCGAACGGATCAGCCAGGCTGCGGAGGCCAGG GCGCGCTTGCTGGAAGAACGCAAGGCACGTGCCGTCCAACGCCGGGAAGC CGAGGAGGCGTCTCGCAAACGTGTCCGCAGAGAGGCAGAAGAAGCTGCAG GCGGGGGCGAGGATGAGGAAGACGACGAATACGATGGAAATTTGGCATAA
back to top

Coding sequence (CDS) from alignment at chr16:707342..709591+

>NO16G02460.1 ID=NO16G02460.1|Name=NO16G02460.1|organism=Nannochloropsis oceanica|type=CDS|length=2250bp|location=Sequence derived from alignment at chr16:707342..709591+ (Nannochloropsis oceanica)
ATGCCGCCCAAGGGGGCCAAGAACGCAGACGGCCAGTCCAAGTCCATCGC
CTCTGCAACCTCTACTTCTCCGTCGACGCCTTCCTCAAGAGGCATGGTAG
CTCCTATGCGCAAGTTCTCACATGTGTGGAAAGCGCCGGAGTCGACTACG
TGGCGGGGAATTTACCGTTGGGAGGATGAGGAGCATGAGGGGTGGAAGGC
GGCCCTGACCCAATTCCCGTACAAAGTGCCTTCTTTTGCGACCAAAGCAG
AGGCCGTAGAGTTCATCAAAGCGCACTGCCGCGTGGGCAGCAACCGGGAT
CACCGCCTGTATCAGCACATCTTCACGCTGCTCACGAGCTGGGAGCAGCT
CAATAAATACTTAGTGGTCAAGATCACGCATTACGACCGCCTCCTGGGCG
AATCTGCTACCATGGCGGCGTCGCCGTCCCTAGACCCGACCGGAAACGTA
TGGTTAAGAGGTCCGCCCGCGGAGGATCCCGATTTGAATGTCGGTGGCGT
GGTGATGGCGCTGGACCAGCGATTGAGCCTCCCTTTCCATCAGGTGCTCT
CGGCACCGTCCACGATCAACACTCTCAAGTACCTGTTCGAGCACATGCGG
TGCGGCATCTTCGTCAAGATTAAGGCAGGCCAGCTGGTCATGTTCGTACC
CTTCGCCAACGACGCCTATGCCAACACTTGGGCAGGTGAGATGGAGTTCG
ATTCGGCGGACGGCACGTTGGAGACGTACTTCCAGGAGAAGATGAAGGGC
GGCTTCCGCAAGGAGAACATCCTGCCCAACGTGGCGGAGTGGTGGGCGAA
CGGGAACATGATCGACAACGAGAAGGTCAAGGCGGGCACCGACAAGCGTT
TCGGGCAGGTCTGGGGCGACTTCTTCTTCTGCCAGCTCAAAGAGATGCTA
CAGGCAGTCTGTCAGGAGAGGGCTGTGCCCGATTGCGAGTTCTTCATCAA
CAAACGCGACTACCCTCACCTCAAGACGCACCATGACACCAACAGCAGCA
GCAGCAGCCATGACAGGGAAGCAGGCGCTGTGACGGCCGTGGAGCCTTAC
GGTTTTATCTTCGGAAAGGATGACCGGGACCCCGCGCAAGACGTGCCCCT
GGCCCGGCACGCCTATTCCTCGTACGCGCCCGTGGCCTCCTTCTACATCT
CCTCCCGCTTCGCCGACATTCCCTGGCCCACCACCGAGGACTGGGAGGCC
GCCACGGGCCGCGTGTACCCCCACACCTTCATGCACCGCTTCGACGCCGA
GACTGACGAGCTTGTGGTGGAGAACGAGCCCCGCGACCTCTTCACCGAGG
CCAACTTCCAGAAGTTTAGTCAGGTCGAGTGGCGGGACAAGGTGCCCACA
GCTTTCTTCCGGGGCACGGCCACAGGCGGCGGTACCAAGGTCGAAACTAA
TCAGCGCCTAAAACTCGCCCACCTCAGCCACCTGTGGAGCAAGGATGGGT
TCTACAACGGGCAAGAGAACGAGGACTTCTCTGTGCCCTACCTGGACGCG
GCGCTGACAGGCTGGAACATGCGCGACAAAAAGATTGCCAGCGAGCCCAT
GAGCTTCATTAAGAAAAAAGACTTCGCCTTCAAGGTCGGAAAGGCCAACT
TCGTACCCATCTACGAACAGGCGCGCTTTAAATACCTGATCTACGTGGAG
GGCCACTGCGCTGCTTGCCGCTACTCCTTCCTCATGCGCCTGGGCTCGGT
GATCCTCAAAGTTGAGTCCCGCTGCGTGGCCGATGAGATGTGGTACTTCC
CCCTCCTCAGGCCCTTTGTTGACCACGTGCCCGTCAAGGCCGACATGTCG
GACCTGGACGAGCAGATCCAGTGGTGCCGCGAGCACGACGCCAAGTGCCA
GGTGATTGCAGCCAACGCCCGCCGCATTTACGATGCCTACTGTTCCAAGG
AGGGCATTTTGGACTACCTGCAGCTCATCACCCACAAGATTGCTGCGCGC
TGGCACCGTGTGCCTTCCTGGTGGCAGCCATCTCCCCTCGGGTGCCCGCG
TCCGCGGGAGGGTGGGGGTGGGGGGGCAGGAGGAGGCCGCTGCAGCTGCC
GGCGGTGCAACGAAGACCGCGAACGGATCAGCCAGGCTGCGGAGGCCAGG
GCGCGCTTGCTGGAAGAACGCAAGGCACGTGCCGTCCAACGCCGGGAAGC
CGAGGAGGCGTCTCGCAAACGTGTCCGCAGAGAGGCAGAAGAAGCTGCAG
GCGGGGGCGAGGATGAGGAAGACGACGAATACGATGGAAATTTGGCATAA
back to top
Synonyms
Publications