NO16G02430.1, NO16G02430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02430.1
Unique NameNO16G02430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1439
Alignment locationchr16:696806..698244 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:696806..698244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO16G02430.1 vs.
Match: EWM23934.1 (methyltransferase-like protein 21a-like isoform 2 [Nannochloropsis gaditana])

HSP 1 Score: 327.4 bits (838), Expect = 4.800e-86
Identity = 180/329 (54.71%), Postives = 227/329 (69.00%), Query Frame = 0 
Query:   10 LEDEDEYFFNPELFMNKTLAPVTYRFPGLEQT-VWASSASSTDHDQTGEIIWPISVFLAWFVVSQGERFRDHQAIELGAGCAGLPGLIASRFASDVLLTDGNDSVLETLKRNVAEM------IEQEKIEEKR-----------GQSSTSISRS-GDSTALKGTTSSNG-SRGSFK-------RVEASSLVWGDGKSAQAIVDDGWRPQILLGADIVCWIDFVIPLLQTVKFFFLHAREPLQAVLYLGFVNRANATERLLFTQANAMGMLVTRIPAESFLPLDKKDWPTELRDTTQKLELLAISLDRTVDGFDRTVCMDNSGMIGRATPC 312
            +E E + FFNP+LF+NK+L  V Y    LEQ  VW S+AS TDHDQTGEI+WPIS+FL+WFV ++ + FRD Q IELGAGCAGLPGLIASRFA DVL+TDGN  VLETL+RNVAE       I     E              GQS+   S   GD  AL   +S+   SR +         ++E  +L+WGD +S +A+V++GWRPQILLGADIVCWIDFV PLLQTVKF FLHA +  +AVL+LGFVNRAN+TER L+ QA A GM V R+P E+F+P++K+ WP+EL+ T Q+LE+L+ISLD T++G+D  V  + S     ATPC
Sbjct:    7 VEAEPDCFFNPDLFVNKSLVKVNYSIQDLEQQPVWVSAASCTDHDQTGEIVWPISIFLSWFVAARRDLFRDQQVIELGAGCAGLPGLIASRFAKDVLVTDGNYLVLETLQRNVAETRGIFRTITDHSCEPGEPVEPMFKSTCYGQSTYDCSVGVGDEKALNNNSSAVAVSRDALTSCWHEKGKLETRTLLWGDKESVEAVVNEGWRPQILLGADIVCWIDFVTPLLQTVKFLFLHAPDRERAVLFLGFVNRANSTERFLYAQARAFGMSVKRVPHETFMPIEKRCWPSELQ-TAQELEVLSISLDPTLEGYDSPVSFEESRAYDWATPC 334
The following BLAST results are available for this feature:
BLAST of NO16G02430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23934.14.800e-8654.71methyltransferase-like protein 21a-like isoform 2 ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02430NO16G02430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02430.1NO16G02430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02430.1.cds1NO16G02430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02430.1 ID=NO16G02430.1|Name=NO16G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1439bp
CAATTCAAGCATTAGTTCTATGCTGTCTATGAGATATCAGGCATTCTACA
TTGTGTTGTACGTCCTGTACTTTGGGGTGGAAAGGAGGGCAAGCTGGGCC
ATGTCTCGCTGCCACCCACCCTCGCCCCCCTTCAGAATGCTCGTGTCTCC
CACAATGTTCTTTGCTGTGCTACGAGCCATTCACTAAACCATTTGCAATA
TCTTACCACACACAGCTCATACATACCATACATACCCTTGGGCGTCGTGC
GGGTGGAGATTTGACTTAAAAGAAGAAGTGCGCGCTAACCTCCCGACCTC
CCGCCATGACGACGAGCCTGTTACACTCATCACTTGAGGACGAGGATGAG
TACTTTTTCAACCCCGAGTTGTTTATGAACAAGACGCTTGCACCCGTCAC
ATACCGCTTTCCAGGTTTGGAACAGACTGTGTGGGCGTCCAGTGCCTCCT
CCACAGACCATGACCAAACCGGTGAGATCATCTGGCCAATCTCTGTCTTT
TTGGCTTGGTTTGTGGTGTCTCAAGGAGAGCGTTTCCGTGACCACCAAGC
CATCGAGCTGGGAGCCGGATGTGCGGGCTTGCCGGGTCTCATAGCGTCGC
GTTTTGCCTCGGACGTGCTTCTCACGGATGGGAATGACTCGGTGCTCGAG
ACACTCAAACGCAACGTGGCTGAAATGATTGAGCAGGAAAAGATTGAGGA
AAAGAGGGGACAGAGTAGCACCAGCATTAGCAGAAGTGGCGACAGCACCG
CGCTCAAGGGTACTACCAGCAGTAATGGCAGCCGCGGCAGCTTTAAGCGA
GTGGAGGCAAGCTCTTTGGTGTGGGGCGACGGAAAAAGCGCGCAAGCTAT
CGTAGATGATGGATGGCGGCCGCAAATTCTCTTGGGGGCTGACATTGTGT
GTTGGATAGATTTCGTGATTCCTTTGCTACAGACAGTAAAATTCTTTTTT
TTGCACGCGCGAGAGCCGCTCCAGGCGGTCCTATACCTTGGCTTCGTCAA
TCGCGCAAACGCGACCGAGCGTTTATTGTTCACTCAGGCAAACGCGATGG
GCATGCTTGTCACTCGGATTCCAGCCGAGTCATTTTTACCCTTAGATAAG
AAGGACTGGCCCACAGAGCTAAGGGACACGACCCAAAAGTTGGAGCTTTT
AGCAATTTCATTAGACCGAACAGTCGACGGTTTTGATAGAACCGTGTGCA
TGGACAATAGCGGGATGATCGGACGGGCTACGCCTTGTTGATTTCCATGT
CAAGGAAATACATAGATCATAATTTGTAGGCGGATGTAAAGAACTGTATG
TTGAGGAAAAGAAAGAAAGAAGAGAGATCGGAAGGGATTAACCCCCCATA
AAAAAGGGATGGCATGGGAAAAAAACAAAAAAAAATGGATAAAGTTTAGT
AAAAGAAAAAGACAACCAGCTTTTGTTTGATGAAACTCT
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protein sequence of NO16G02430.1

>NO16G02430.1-protein ID=NO16G02430.1-protein|Name=NO16G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MTTSLLHSSLEDEDEYFFNPELFMNKTLAPVTYRFPGLEQTVWASSASST
DHDQTGEIIWPISVFLAWFVVSQGERFRDHQAIELGAGCAGLPGLIASRF
ASDVLLTDGNDSVLETLKRNVAEMIEQEKIEEKRGQSSTSISRSGDSTAL
KGTTSSNGSRGSFKRVEASSLVWGDGKSAQAIVDDGWRPQILLGADIVCW
IDFVIPLLQTVKFFFLHAREPLQAVLYLGFVNRANATERLLFTQANAMGM
LVTRIPAESFLPLDKKDWPTELRDTTQKLELLAISLDRTVDGFDRTVCMD
NSGMIGRATPC*
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mRNA from alignment at chr16:696806..698244-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02430.1 ID=NO16G02430.1|Name=NO16G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1439bp|location=Sequence derived from alignment at chr16:696806..698244- (Nannochloropsis oceanica)
CAATTCAAGCATTAGTTCTATGCTGTCTATGAGATATCAGGCATTCTACA
TTGTGTTGTACGTCCTGTACTTTGGGGTGGAAAGGAGGGCAAGCTGGGCC
ATGTCTCGCTGCCACCCACCCTCGCCCCCCTTCAGAATGCTCGTGTCTCC
CACAATGTTCTTTGCTGTGCTACGAGCCATTCACTAAACCATTTGCAATA
TCTTACCACACACAGCTCATACATACCATACATACCCTTGGGCGTCGTGC
GGGTGGAGATTTGACTTAAAAGAAGAAGTGCGCGCTAACCTCCCGACCTC
CCGCCATGACGACGAGCCTGTTACACTCATCACTTGAGGACGAGGATGAG
TACTTTTTCAACCCCGAGTTGTTTATGAACAAGACGCTTGCACCCGTCAC
ATACCGCTTTCCAGGTTTGGAACAGACTGTGTGGGCGTCCAGTGCCTCCT
CCACAGACCATGACCAAACCGGTGAGATCATCTGGCCAATCTCTGTCTTT
TTGGCTTGGTTTGTGGTGTCTCAAGGAGAGCGTTTCCGTGACCACCAAGC
CATCGAGCTGGGAGCCGGATGTGCGGGCTTGCCGGGTCTCATAGCGTCGC
GTTTTGCCTCGGACGTGCTTCTCACGGATGGGAATGACTCGGTGCTCGAG
ACACTCAAACGCAACGTGGCTGAAATGATTGAGCAGGAAAAGATTGAGGA
AAAGAGGGGACAGAGTAGCACCAGCATTAGCAGAAGTGGCGACAGCACCG
CGCTCAAGGGTACTACCAGCAGTAATGGCAGCCGCGGCAGCTTTAAGCGA
GTGGAGGCAAGCTCTTTGGTGTGGGGCGACGGAAAAAGCGCGCAAGCTAT
CGTAGATGATGGATGGCGGCCGCAAATTCTCTTGGGGGCTGACATTGTGT
GTTGGATAGATTTCGTGATTCCTTTGCTACAGACAGTAAAATTCTTTTTT
TTGCACGCGCGAGAGCCGCTCCAGGCGGTCCTATACCTTGGCTTCGTCAA
TCGCGCAAACGCGACCGAGCGTTTATTGTTCACTCAGGCAAACGCGATGG
GCATGCTTGTCACTCGGATTCCAGCCGAGTCATTTTTACCCTTAGATAAG
AAGGACTGGCCCACAGAGCTAAGGGACACGACCCAAAAGTTGGAGCTTTT
AGCAATTTCATTAGACCGAACAGTCGACGGTTTTGATAGAACCGTGTGCA
TGGACAATAGCGGGATGATCGGACGGGCTACGCCTTGTTGATTTCCATGT
CAAGGAAATACATAGATCATAATTTGTAGGCGGATGTAAAGAACTGTATG
TTGAGGAAAAGAAAGAAAGAAGAGAGATCGGAAGGGATTAACCCCCCATA
AAAAAGGGATGGCATGGGAAAAAAACAAAAAAAAATGGATAAAGTTTAGT
AAAAGAAAAAGACAACCAGCTTTTGTTTGATGAAACTCT
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Coding sequence (CDS) from alignment at chr16:696806..698244-

>NO16G02430.1 ID=NO16G02430.1|Name=NO16G02430.1|organism=Nannochloropsis oceanica|type=CDS|length=936bp|location=Sequence derived from alignment at chr16:696806..698244- (Nannochloropsis oceanica)
ATGACGACGAGCCTGTTACACTCATCACTTGAGGACGAGGATGAGTACTT
TTTCAACCCCGAGTTGTTTATGAACAAGACGCTTGCACCCGTCACATACC
GCTTTCCAGGTTTGGAACAGACTGTGTGGGCGTCCAGTGCCTCCTCCACA
GACCATGACCAAACCGGTGAGATCATCTGGCCAATCTCTGTCTTTTTGGC
TTGGTTTGTGGTGTCTCAAGGAGAGCGTTTCCGTGACCACCAAGCCATCG
AGCTGGGAGCCGGATGTGCGGGCTTGCCGGGTCTCATAGCGTCGCGTTTT
GCCTCGGACGTGCTTCTCACGGATGGGAATGACTCGGTGCTCGAGACACT
CAAACGCAACGTGGCTGAAATGATTGAGCAGGAAAAGATTGAGGAAAAGA
GGGGACAGAGTAGCACCAGCATTAGCAGAAGTGGCGACAGCACCGCGCTC
AAGGGTACTACCAGCAGTAATGGCAGCCGCGGCAGCTTTAAGCGAGTGGA
GGCAAGCTCTTTGGTGTGGGGCGACGGAAAAAGCGCGCAAGCTATCGTAG
ATGATGGATGGCGGCCGCAAATTCTCTTGGGGGCTGACATTGTGTGTTGG
ATAGATTTCGTGATTCCTTTGCTACAGACAGTAAAATTCTTTTTTTTGCA
CGCGCGAGAGCCGCTCCAGGCGGTCCTATACCTTGGCTTCGTCAATCGCG
CAAACGCGACCGAGCGTTTATTGTTCACTCAGGCAAACGCGATGGGCATG
CTTGTCACTCGGATTCCAGCCGAGTCATTTTTACCCTTAGATAAGAAGGA
CTGGCCCACAGAGCTAAGGGACACGACCCAAAAGTTGGAGCTTTTAGCAA
TTTCATTAGACCGAACAGTCGACGGTTTTGATAGAACCGTGTGCATGGAC
AATAGCGGGATGATCGGACGGGCTACGCCTTGTTGA
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Synonyms
Publications