NO16G02370.1, NO16G02370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02370.1
Unique NameNO16G02370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1296
Alignment locationchr16:681734..683029 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:681734..683029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02370.1 vs.
Match: EWM23929.1 (uridine kinase [Nannochloropsis gaditana])

HSP 1 Score: 417.2 bits (1071), Expect = 5.500e-113
Identity = 237/357 (66.39%), Postives = 268/357 (75.07%), Query Frame = 0 
Query:   10 SAARPVELIVACITGAVVAYSLLASYSSPPRTLHHS---DPDRRKVDEGNVSLVDGSGFDACIPPSVRSLLPRPRKRTDSTVAIDESTGLTKVSVEPMLNDLEQQIKTSRPPASGPLTVGVAGGSGSGKTTFARALYEALGEEHVTYITHDSYYKDLSHLTLAERAVANFDHPNSLDTALLVEHLKALKRGESVEVPEYCFATHARLASTTTVEPRRVILVEGILIFADRALVQELAIKVFVDTESDLRLIRRIHRDVKERGRSLESIVDQYIKTVRPMHMDFVEPSKREADVIIPLGMNQVALDMFLSRLQAEVADKLPNSTPRTLQTLVQPSSHKKNASSIALGKQGSLSLGRSM 364
            S+A+P+EL+   + GA VA+SLLA  SS     H     DP  R+ DE +      SGF A +P  V  LLP   +   S   ++E  GL K ++ P+L  LEQ +K  R   SGPLT+GVAGGSGSGKTTFARALYEALGEEHVTYITHDSYYKDLSHL   ER  +NFDHPN+LDTALLVEHL+ALKRG +VEVPEY FATH RL  T   EPR VIL+EGILIFADR+LVQELAIKVFVDTESDLRLIRRIHRDVKERGRSLESIVDQY+KTVRPMH++FVEPSKREADVIIPLGMNQVALDMFLSRLQAEV + L +    T     + S   K  + IALGKQGSLSLG +M
Sbjct:    5 SSAKPLELLFVFLLGAAVAWSLLAGRSSSRGVTHKRKAHDPTCRQEDEEDDVQEVKSGFLAYLPSPVGPLLPL--RHGVSATPLEEPQGLGKETMGPLLESLEQPVKAPRQSTSGPLTLGVAGGSGSGKTTFARALYEALGEEHVTYITHDSYYKDLSHLPFDERKKSNFDHPNALDTALLVEHLRALKRGHTVEVPEYDFATHNRLKRTCKAEPRPVILLEGILIFADRSLVQELAIKVFVDTESDLRLIRRIHRDVKERGRSLESIVDQYVKTVRPMHLEFVEPSKREADVIIPLGMNQVALDMFLSRLQAEVGEHLGHLGSSTSPD--KDSQSPKRKAYIALGKQGSLSLGNNM 357
The following BLAST results are available for this feature:
BLAST of NO16G02370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23929.15.500e-11366.39uridine kinase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02370NO16G02370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02370.1NO16G02370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02370.1.cds1NO16G02370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02370.1 ID=NO16G02370.1|Name=NO16G02370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1296bp
ACAGAGCTCACTGCACCTGTTGCCCAGATCTAAGCTCTCTACCGAGCAAG
TATGTCCTCCTCCGCCTCCGCTTCCAACAGTGCTGCCAGGCCGGTGGAGT
TGATAGTCGCATGCATCACAGGTGCCGTAGTTGCCTACTCCCTCCTCGCA
AGCTACTCGTCGCCACCACGAACACTGCACCACAGCGATCCCGACCGCCG
AAAGGTAGACGAAGGAAATGTGTCATTGGTTGACGGAAGCGGCTTTGACG
CCTGCATTCCGCCCTCCGTGCGCAGCCTTTTGCCCCGCCCGCGGAAACGC
ACCGACAGCACTGTGGCCATCGACGAGTCAACGGGCCTGACCAAGGTAAG
CGTTGAACCCATGTTGAACGACCTGGAACAGCAAATAAAGACGTCCCGGC
CCCCGGCCTCGGGACCTTTGACGGTGGGCGTGGCGGGTGGCAGCGGATCA
GGCAAGACGACATTTGCGCGCGCCCTGTACGAGGCACTGGGGGAGGAGCA
CGTCACATATATCACGCACGATTCGTACTACAAGGATTTGAGCCATTTGA
CCTTGGCGGAACGTGCCGTAGCCAACTTTGACCACCCGAATTCCCTGGAC
ACAGCCCTGCTGGTGGAACACCTCAAGGCGCTTAAACGGGGTGAATCGGT
TGAAGTGCCCGAATATTGCTTTGCCACCCACGCTCGATTGGCTAGCACTA
CCACGGTTGAACCAAGGCGCGTCATATTGGTGGAGGGTATTTTAATCTTT
GCGGATCGTGCATTGGTGCAGGAACTGGCGATCAAGGTATTCGTTGACAC
TGAGTCGGATCTTCGATTGATTCGACGCATCCACCGGGACGTGAAAGAGC
GTGGCCGAAGCCTCGAGTCCATCGTGGACCAGTATATTAAGACCGTGCGG
CCCATGCACATGGATTTCGTTGAGCCCTCCAAACGTGAGGCGGACGTTAT
CATTCCACTCGGCATGAATCAAGTAGCCTTGGATATGTTCCTCAGCCGCC
TCCAGGCCGAGGTGGCTGATAAGTTGCCAAATTCGACACCGCGGACGCTA
CAGACCCTAGTCCAACCCTCATCTCATAAAAAGAATGCCTCTTCCATTGC
CTTGGGGAAGCAAGGGTCTTTGTCACTGGGTAGAAGCATGAAGCAATCGT
CAGTATAAAAAGAAAAGAAATAAAATATGATTATATTTCGCCATTTAACT
TGAAATTGTATTCCAGCAGAGCGACAGTGCACTTTACAAAAGAAACAAAA
GTTTGCATGCAGTTATGTCTAAAGTATAAATAAATTTTGTCTGTCT
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protein sequence of NO16G02370.1

>NO16G02370.1-protein ID=NO16G02370.1-protein|Name=NO16G02370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MSSSASASNSAARPVELIVACITGAVVAYSLLASYSSPPRTLHHSDPDRR
KVDEGNVSLVDGSGFDACIPPSVRSLLPRPRKRTDSTVAIDESTGLTKVS
VEPMLNDLEQQIKTSRPPASGPLTVGVAGGSGSGKTTFARALYEALGEEH
VTYITHDSYYKDLSHLTLAERAVANFDHPNSLDTALLVEHLKALKRGESV
EVPEYCFATHARLASTTTVEPRRVILVEGILIFADRALVQELAIKVFVDT
ESDLRLIRRIHRDVKERGRSLESIVDQYIKTVRPMHMDFVEPSKREADVI
IPLGMNQVALDMFLSRLQAEVADKLPNSTPRTLQTLVQPSSHKKNASSIA
LGKQGSLSLGRSMKQSSV*
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mRNA from alignment at chr16:681734..683029+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02370.1 ID=NO16G02370.1|Name=NO16G02370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1296bp|location=Sequence derived from alignment at chr16:681734..683029+ (Nannochloropsis oceanica)
ACAGAGCTCACTGCACCTGTTGCCCAGATCTAAGCTCTCTACCGAGCAAG
TATGTCCTCCTCCGCCTCCGCTTCCAACAGTGCTGCCAGGCCGGTGGAGT
TGATAGTCGCATGCATCACAGGTGCCGTAGTTGCCTACTCCCTCCTCGCA
AGCTACTCGTCGCCACCACGAACACTGCACCACAGCGATCCCGACCGCCG
AAAGGTAGACGAAGGAAATGTGTCATTGGTTGACGGAAGCGGCTTTGACG
CCTGCATTCCGCCCTCCGTGCGCAGCCTTTTGCCCCGCCCGCGGAAACGC
ACCGACAGCACTGTGGCCATCGACGAGTCAACGGGCCTGACCAAGGTAAG
CGTTGAACCCATGTTGAACGACCTGGAACAGCAAATAAAGACGTCCCGGC
CCCCGGCCTCGGGACCTTTGACGGTGGGCGTGGCGGGTGGCAGCGGATCA
GGCAAGACGACATTTGCGCGCGCCCTGTACGAGGCACTGGGGGAGGAGCA
CGTCACATATATCACGCACGATTCGTACTACAAGGATTTGAGCCATTTGA
CCTTGGCGGAACGTGCCGTAGCCAACTTTGACCACCCGAATTCCCTGGAC
ACAGCCCTGCTGGTGGAACACCTCAAGGCGCTTAAACGGGGTGAATCGGT
TGAAGTGCCCGAATATTGCTTTGCCACCCACGCTCGATTGGCTAGCACTA
CCACGGTTGAACCAAGGCGCGTCATATTGGTGGAGGGTATTTTAATCTTT
GCGGATCGTGCATTGGTGCAGGAACTGGCGATCAAGGTATTCGTTGACAC
TGAGTCGGATCTTCGATTGATTCGACGCATCCACCGGGACGTGAAAGAGC
GTGGCCGAAGCCTCGAGTCCATCGTGGACCAGTATATTAAGACCGTGCGG
CCCATGCACATGGATTTCGTTGAGCCCTCCAAACGTGAGGCGGACGTTAT
CATTCCACTCGGCATGAATCAAGTAGCCTTGGATATGTTCCTCAGCCGCC
TCCAGGCCGAGGTGGCTGATAAGTTGCCAAATTCGACACCGCGGACGCTA
CAGACCCTAGTCCAACCCTCATCTCATAAAAAGAATGCCTCTTCCATTGC
CTTGGGGAAGCAAGGGTCTTTGTCACTGGGTAGAAGCATGAAGCAATCGT
CAGTATAAAAAGAAAAGAAATAAAATATGATTATATTTCGCCATTTAACT
TGAAATTGTATTCCAGCAGAGCGACAGTGCACTTTACAAAAGAAACAAAA
GTTTGCATGCAGTTATGTCTAAAGTATAAATAAATTTTGTCTGTCT
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Coding sequence (CDS) from alignment at chr16:681734..683029+

>NO16G02370.1 ID=NO16G02370.1|Name=NO16G02370.1|organism=Nannochloropsis oceanica|type=CDS|length=1107bp|location=Sequence derived from alignment at chr16:681734..683029+ (Nannochloropsis oceanica)
ATGTCCTCCTCCGCCTCCGCTTCCAACAGTGCTGCCAGGCCGGTGGAGTT
GATAGTCGCATGCATCACAGGTGCCGTAGTTGCCTACTCCCTCCTCGCAA
GCTACTCGTCGCCACCACGAACACTGCACCACAGCGATCCCGACCGCCGA
AAGGTAGACGAAGGAAATGTGTCATTGGTTGACGGAAGCGGCTTTGACGC
CTGCATTCCGCCCTCCGTGCGCAGCCTTTTGCCCCGCCCGCGGAAACGCA
CCGACAGCACTGTGGCCATCGACGAGTCAACGGGCCTGACCAAGGTAAGC
GTTGAACCCATGTTGAACGACCTGGAACAGCAAATAAAGACGTCCCGGCC
CCCGGCCTCGGGACCTTTGACGGTGGGCGTGGCGGGTGGCAGCGGATCAG
GCAAGACGACATTTGCGCGCGCCCTGTACGAGGCACTGGGGGAGGAGCAC
GTCACATATATCACGCACGATTCGTACTACAAGGATTTGAGCCATTTGAC
CTTGGCGGAACGTGCCGTAGCCAACTTTGACCACCCGAATTCCCTGGACA
CAGCCCTGCTGGTGGAACACCTCAAGGCGCTTAAACGGGGTGAATCGGTT
GAAGTGCCCGAATATTGCTTTGCCACCCACGCTCGATTGGCTAGCACTAC
CACGGTTGAACCAAGGCGCGTCATATTGGTGGAGGGTATTTTAATCTTTG
CGGATCGTGCATTGGTGCAGGAACTGGCGATCAAGGTATTCGTTGACACT
GAGTCGGATCTTCGATTGATTCGACGCATCCACCGGGACGTGAAAGAGCG
TGGCCGAAGCCTCGAGTCCATCGTGGACCAGTATATTAAGACCGTGCGGC
CCATGCACATGGATTTCGTTGAGCCCTCCAAACGTGAGGCGGACGTTATC
ATTCCACTCGGCATGAATCAAGTAGCCTTGGATATGTTCCTCAGCCGCCT
CCAGGCCGAGGTGGCTGATAAGTTGCCAAATTCGACACCGCGGACGCTAC
AGACCCTAGTCCAACCCTCATCTCATAAAAAGAATGCCTCTTCCATTGCC
TTGGGGAAGCAAGGGTCTTTGTCACTGGGTAGAAGCATGAAGCAATCGTC
AGTATAA
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Synonyms
Publications