NO16G02230.1, NO16G02230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02230.1
Unique NameNO16G02230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1398
Alignment locationchr16:651185..652582 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:651185..652582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02230.1 vs.
Match: EWM23925.1 (lanc-like protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 587.4 bits (1513), Expect = 3.900e-164
Identity = 280/433 (64.67%), Postives = 340/433 (78.52%), Query Frame = 0 
Query:   13 KQLHTYDSSRFVSNLYPKDPPALSPVALLNPRETQTFEERLKHGWERVLRRMDPVCDHNFSIYRGSAGIGYLALHTALQLKEADPHRPQFLDVASRYLQGAQAMLEWRLRHDAREGISFISGTAGIYAPLAVLRKLLGKSGSAPQECIQRVLRLSQLFLHQPSCSSSHRQLQSQHVYPFDILSGAAGYLTSLLYLKEHFPDQVPGNLIRGVVEHIMAGAEDGPCGALLWPWHGKHYLGAAHGVSGILVALLDAHAQGTVLSQEVLRRIHGTIDYLQSLRLPSGNYPTMPCKQDGDQLVQWCHGAPGVLLLFVRAYEIFGEPKYLAWAEMAAEVVWSRGLLRKGNGLCHGVAGNAYCFLALFRCTQNNIYLYRAHVFALAAQDGMMKKYQGTPDHPMSLFEGHTGLLALYTDLLVGNPGLTHFPAFEMGSIAGG 446
            + +H +D +RF++N +PKDPPALSP+ALLNPRETQT ++R+ H WE++LR+ DP  + +++IY GSAGIGYLALH+AL ++ ADP R  F+D+A  YL+GAQA LE RLR    E ISFI GT G+YAPLAVLR+L GKS  A + CIQRVL L+ LFL+Q   +  H + Q  H Y F+IL G +GYLTSLLYL  +FP ++P  L+  V +HI++GAE+GP GALLW WHGK YLGAAHGVSGIL+ALLDAH QG  L   VL RI  T++YL SLRLPSGNYPT P K+  D+LVQWCHGAPG+LLLFV+AYE+FG+PKYLAWAE+AA+VVW RGLLRKGNGLCHGVAGNAYCFLA+FRCT N+IYL+RA VFALAAQD ++  +Q TPDHPMSLFEG  GLLALY DLL G+P    FPAFE   +  G
Sbjct:   11 EDVHQFDRNRFIANPFPKDPPALSPLALLNPRETQTLKDRMSHAWEQILRQTDPQKEKDYTIYTGSAGIGYLALHSALLVESADPRRRHFVDIAGNYLRGAQATLEGRLRQGRHEDISFILGTPGVYAPLAVLRRLQGKSNDAVEACIQRVLDLAPLFLNQ---THHHPRRQHPH-YEFEILYGESGYLTSLLYLNSNFPGRIPDQLLSEVTDHIISGAEEGPGGALLWAWHGKEYLGAAHGVSGILLALLDAHLQGLRLPDVVLERIQCTVNYLYSLRLPSGNYPTRPSKECDDRLVQWCHGAPGILLLFVKAYEVFGQPKYLAWAELAADVVWMRGLLRKGNGLCHGVAGNAYCFLAVFRCTDNDIYLHRARVFALAAQDDIVAAHQDTPDHPMSLFEGLGGLLALYADLLEGDPREALFPAFETRGVRSG 439
The following BLAST results are available for this feature:
BLAST of NO16G02230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23925.13.900e-16464.67lanc-like protein 2 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02230NO16G02230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02230.1NO16G02230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02230.1.cds1NO16G02230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02230.1 ID=NO16G02230.1|Name=NO16G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1398bp
ATGATAGACTACCAAAGCCAAGACGAGGACGACGGTAAGCAATTGCACAC
GTACGACAGCAGCCGCTTCGTGTCCAACCTTTACCCCAAAGATCCTCCTG
CGCTCTCTCCTGTTGCCTTGCTCAACCCGCGCGAGACCCAGACGTTCGAG
GAACGCTTGAAACATGGATGGGAGCGGGTTTTGCGCCGCATGGACCCAGT
ATGCGACCATAACTTTAGCATTTATAGAGGCTCAGCTGGCATTGGGTACC
TGGCGTTGCACACGGCGCTGCAACTGAAAGAAGCTGACCCGCACCGTCCG
CAGTTTCTCGATGTGGCTAGTCGTTATCTCCAGGGAGCACAAGCTATGTT
AGAGTGGCGCCTGCGTCACGATGCTCGTGAAGGCATAAGTTTCATCTCAG
GTACAGCTGGTATTTATGCACCCTTGGCCGTCCTACGTAAGTTGCTGGGC
AAGTCCGGCTCCGCCCCTCAAGAGTGCATCCAGCGCGTCCTCCGCCTTTC
GCAACTCTTTCTGCACCAGCCGTCCTGCTCTTCCTCTCATCGGCAGCTCC
AGAGCCAGCACGTTTACCCTTTTGATATATTGAGTGGTGCCGCAGGGTAT
CTGACGTCCCTTCTTTATCTCAAGGAGCACTTCCCCGACCAGGTCCCTGG
GAATCTGATTCGCGGCGTCGTCGAACACATTATGGCGGGAGCGGAGGACG
GCCCTTGTGGTGCACTCTTGTGGCCCTGGCATGGGAAACACTACCTTGGG
GCGGCCCACGGCGTCAGTGGCATTTTGGTCGCCTTATTGGACGCGCATGC
ACAAGGCACGGTACTGTCGCAAGAGGTCCTGAGGCGCATTCACGGGACGA
TTGATTATTTACAATCGCTCCGGTTGCCTTCAGGAAACTATCCTACTATG
CCCTGCAAACAAGATGGTGACCAACTTGTGCAGTGGTGTCACGGTGCCCC
AGGTGTCTTGCTGCTGTTTGTGCGGGCCTACGAAATCTTTGGGGAGCCCA
AGTACTTGGCGTGGGCGGAGATGGCTGCCGAAGTGGTGTGGTCGCGGGGT
TTACTCCGCAAAGGGAATGGGCTCTGTCATGGGGTGGCTGGAAACGCTTA
TTGCTTTCTTGCCCTCTTTCGTTGCACTCAAAATAATATCTACCTTTATC
GTGCCCATGTCTTTGCCTTGGCAGCACAGGACGGTATGATGAAGAAGTAT
CAGGGTACCCCGGACCACCCTATGTCACTCTTTGAAGGACATACAGGCCT
GCTTGCACTCTACACGGACCTTCTGGTGGGCAATCCTGGTCTAACGCACT
TTCCCGCATTCGAAATGGGATCAATAGCAGGGGGATGGGCGGGAGAGGGC
GTCTTCCGAAACACGGGTGCGCGGTCAGGGCGAGCGGACGACGAATGA
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protein sequence of NO16G02230.1

>NO16G02230.1-protein ID=NO16G02230.1-protein|Name=NO16G02230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp
MIDYQSQDEDDGKQLHTYDSSRFVSNLYPKDPPALSPVALLNPRETQTFE
ERLKHGWERVLRRMDPVCDHNFSIYRGSAGIGYLALHTALQLKEADPHRP
QFLDVASRYLQGAQAMLEWRLRHDAREGISFISGTAGIYAPLAVLRKLLG
KSGSAPQECIQRVLRLSQLFLHQPSCSSSHRQLQSQHVYPFDILSGAAGY
LTSLLYLKEHFPDQVPGNLIRGVVEHIMAGAEDGPCGALLWPWHGKHYLG
AAHGVSGILVALLDAHAQGTVLSQEVLRRIHGTIDYLQSLRLPSGNYPTM
PCKQDGDQLVQWCHGAPGVLLLFVRAYEIFGEPKYLAWAEMAAEVVWSRG
LLRKGNGLCHGVAGNAYCFLALFRCTQNNIYLYRAHVFALAAQDGMMKKY
QGTPDHPMSLFEGHTGLLALYTDLLVGNPGLTHFPAFEMGSIAGGWAGEG
VFRNTGARSGRADDE*
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mRNA from alignment at chr16:651185..652582+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02230.1 ID=NO16G02230.1|Name=NO16G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1398bp|location=Sequence derived from alignment at chr16:651185..652582+ (Nannochloropsis oceanica)
ATGATAGACTACCAAAGCCAAGACGAGGACGACGGTAAGCAATTGCACAC
GTACGACAGCAGCCGCTTCGTGTCCAACCTTTACCCCAAAGATCCTCCTG
CGCTCTCTCCTGTTGCCTTGCTCAACCCGCGCGAGACCCAGACGTTCGAG
GAACGCTTGAAACATGGATGGGAGCGGGTTTTGCGCCGCATGGACCCAGT
ATGCGACCATAACTTTAGCATTTATAGAGGCTCAGCTGGCATTGGGTACC
TGGCGTTGCACACGGCGCTGCAACTGAAAGAAGCTGACCCGCACCGTCCG
CAGTTTCTCGATGTGGCTAGTCGTTATCTCCAGGGAGCACAAGCTATGTT
AGAGTGGCGCCTGCGTCACGATGCTCGTGAAGGCATAAGTTTCATCTCAG
GTACAGCTGGTATTTATGCACCCTTGGCCGTCCTACGTAAGTTGCTGGGC
AAGTCCGGCTCCGCCCCTCAAGAGTGCATCCAGCGCGTCCTCCGCCTTTC
GCAACTCTTTCTGCACCAGCCGTCCTGCTCTTCCTCTCATCGGCAGCTCC
AGAGCCAGCACGTTTACCCTTTTGATATATTGAGTGGTGCCGCAGGGTAT
CTGACGTCCCTTCTTTATCTCAAGGAGCACTTCCCCGACCAGGTCCCTGG
GAATCTGATTCGCGGCGTCGTCGAACACATTATGGCGGGAGCGGAGGACG
GCCCTTGTGGTGCACTCTTGTGGCCCTGGCATGGGAAACACTACCTTGGG
GCGGCCCACGGCGTCAGTGGCATTTTGGTCGCCTTATTGGACGCGCATGC
ACAAGGCACGGTACTGTCGCAAGAGGTCCTGAGGCGCATTCACGGGACGA
TTGATTATTTACAATCGCTCCGGTTGCCTTCAGGAAACTATCCTACTATG
CCCTGCAAACAAGATGGTGACCAACTTGTGCAGTGGTGTCACGGTGCCCC
AGGTGTCTTGCTGCTGTTTGTGCGGGCCTACGAAATCTTTGGGGAGCCCA
AGTACTTGGCGTGGGCGGAGATGGCTGCCGAAGTGGTGTGGTCGCGGGGT
TTACTCCGCAAAGGGAATGGGCTCTGTCATGGGGTGGCTGGAAACGCTTA
TTGCTTTCTTGCCCTCTTTCGTTGCACTCAAAATAATATCTACCTTTATC
GTGCCCATGTCTTTGCCTTGGCAGCACAGGACGGTATGATGAAGAAGTAT
CAGGGTACCCCGGACCACCCTATGTCACTCTTTGAAGGACATACAGGCCT
GCTTGCACTCTACACGGACCTTCTGGTGGGCAATCCTGGTCTAACGCACT
TTCCCGCATTCGAAATGGGATCAATAGCAGGGGGATGGGCGGGAGAGGGC
GTCTTCCGAAACACGGGTGCGCGGTCAGGGCGAGCGGACGACGAATGA
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Coding sequence (CDS) from alignment at chr16:651185..652582+

>NO16G02230.1 ID=NO16G02230.1|Name=NO16G02230.1|organism=Nannochloropsis oceanica|type=CDS|length=1398bp|location=Sequence derived from alignment at chr16:651185..652582+ (Nannochloropsis oceanica)
ATGATAGACTACCAAAGCCAAGACGAGGACGACGGTAAGCAATTGCACAC
GTACGACAGCAGCCGCTTCGTGTCCAACCTTTACCCCAAAGATCCTCCTG
CGCTCTCTCCTGTTGCCTTGCTCAACCCGCGCGAGACCCAGACGTTCGAG
GAACGCTTGAAACATGGATGGGAGCGGGTTTTGCGCCGCATGGACCCAGT
ATGCGACCATAACTTTAGCATTTATAGAGGCTCAGCTGGCATTGGGTACC
TGGCGTTGCACACGGCGCTGCAACTGAAAGAAGCTGACCCGCACCGTCCG
CAGTTTCTCGATGTGGCTAGTCGTTATCTCCAGGGAGCACAAGCTATGTT
AGAGTGGCGCCTGCGTCACGATGCTCGTGAAGGCATAAGTTTCATCTCAG
GTACAGCTGGTATTTATGCACCCTTGGCCGTCCTACGTAAGTTGCTGGGC
AAGTCCGGCTCCGCCCCTCAAGAGTGCATCCAGCGCGTCCTCCGCCTTTC
GCAACTCTTTCTGCACCAGCCGTCCTGCTCTTCCTCTCATCGGCAGCTCC
AGAGCCAGCACGTTTACCCTTTTGATATATTGAGTGGTGCCGCAGGGTAT
CTGACGTCCCTTCTTTATCTCAAGGAGCACTTCCCCGACCAGGTCCCTGG
GAATCTGATTCGCGGCGTCGTCGAACACATTATGGCGGGAGCGGAGGACG
GCCCTTGTGGTGCACTCTTGTGGCCCTGGCATGGGAAACACTACCTTGGG
GCGGCCCACGGCGTCAGTGGCATTTTGGTCGCCTTATTGGACGCGCATGC
ACAAGGCACGGTACTGTCGCAAGAGGTCCTGAGGCGCATTCACGGGACGA
TTGATTATTTACAATCGCTCCGGTTGCCTTCAGGAAACTATCCTACTATG
CCCTGCAAACAAGATGGTGACCAACTTGTGCAGTGGTGTCACGGTGCCCC
AGGTGTCTTGCTGCTGTTTGTGCGGGCCTACGAAATCTTTGGGGAGCCCA
AGTACTTGGCGTGGGCGGAGATGGCTGCCGAAGTGGTGTGGTCGCGGGGT
TTACTCCGCAAAGGGAATGGGCTCTGTCATGGGGTGGCTGGAAACGCTTA
TTGCTTTCTTGCCCTCTTTCGTTGCACTCAAAATAATATCTACCTTTATC
GTGCCCATGTCTTTGCCTTGGCAGCACAGGACGGTATGATGAAGAAGTAT
CAGGGTACCCCGGACCACCCTATGTCACTCTTTGAAGGACATACAGGCCT
GCTTGCACTCTACACGGACCTTCTGGTGGGCAATCCTGGTCTAACGCACT
TTCCCGCATTCGAAATGGGATCAATAGCAGGGGGATGGGCGGGAGAGGGC
GTCTTCCGAAACACGGGTGCGCGGTCAGGGCGAGCGGACGACGAATGA
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Synonyms
Publications