NO16G02220.1, NO16G02220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02220.1
Unique NameNO16G02220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length558
Alignment locationchr16:648201..649273 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:648201..649273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO16G02220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02220NO16G02220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02220.1NO16G02220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02220.1.cds1NO16G02220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02220.1.cds2NO16G02220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02220.1.cds3NO16G02220.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02220.1.cds4NO16G02220.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02220.1 ID=NO16G02220.1|Name=NO16G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=558bp
ATGGCTAAGCGACAGAAGCCGCCGAGGGGGACTGATCTGCGAGGAGCCAT
TTTGGACAGGCTCTTGGTAGATACCAGATCACTGGGCTCACACATGCAAT
TAAAATCAACCGCACTTATAATGGGCATGATCATCTTCGGGACTTGTTTG
GGCCTTCCGCACCTGTATCCGTGGAGAAGTGGGCCCAAGCGCCTGGGTCC
ACCACCTTCTCCTTCCAGCATGTCTTGGTGCCGCTCCTTTCATGTCCTGA
CATCAGAATCAATCCGTAAATCAGTCCTAGACCTGGAGCAACGTGCTTTA
TGCGGCACTTTACGGGTCCAAGGGCGCAGGTTGGCCGATCCCAAAGAAGT
TCTTTCCGAGCATGACAAGCTGCAATTAACGAAGGTTGCCAAGAGCCTTG
GCCGTATAAAAAAGAAGCCCCCACCCACGCAGCAAATATTTGAAGCGTCT
ACAGCCGCCATGCGGAAAATGGGTACGTCCGCCAAGATAGCCCAACATTT
GGTCATGTGGCCCCCTGCCAAAGGCATTGTCATGGAGGTGAAGATAATTT
GGATCTAG
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protein sequence of NO16G02220.1

>NO16G02220.1-protein ID=NO16G02220.1-protein|Name=NO16G02220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MAKRQKPPRGTDLRGAILDRLLVDTRSLGSHMQLKSTALIMGMIIFGTCL
GLPHLYPWRSGPKRLGPPPSPSSMSWCRSFHVLTSESIRKSVLDLEQRAL
CGTLRVQGRRLADPKEVLSEHDKLQLTKVAKSLGRIKKKPPPTQQIFEAS
TAAMRKMGTSAKIAQHLVMWPPAKGIVMEVKIIWI*
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mRNA from alignment at chr16:648201..649273+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02220.1 ID=NO16G02220.1|Name=NO16G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1073bp|location=Sequence derived from alignment at chr16:648201..649273+ (Nannochloropsis oceanica)
ATGGCTAAGCGACAGAAGCCGCCGAGGGGGACTGATCTGCGAGGTGAAGT
TTGGGGCGGAGGTGGAGGCGGCGGGCATGGCCAAGGCTCCGAACGTAGTG
GTAAAATGGGTCGTAGCGCGGCAGCCGGTCATAATACTCTGTTTTCTCCT
TTGTAAGATGCATTACCACTTACCGGACGACAAACAAACAACCATGGCGA
CAAAAGCCATTACAAAGAAAAATATCATGATTTACTAACTTTCTTAAAAA
TATAATAGTCGCACTTTTACCCCATCCTTCGATTCTACCGAAAACTACTC
GTACTATAAAGTTGTAATCCTTTTCCAGGAGCCATTTTGGACAGGTAGTT
TGGACCATTGGCATCCTGTTCAAAGAACGTCAGAATTGAGGAGTGCCTTG
CCTCGGGAAAAACGCTGCAGCAGGAGCGAGATGCGGAGTTTTTCGTGGAT
ATGCTCACGCGACACCACACACCAGAATAATTGGCCAGGCTCTTGGTAGA
TACCAGGTAAGGAAAAGAACCGGGCTAGAAGGATAAAGGGAAGAGTCTGA
ACATCACACTACTGACATTCCTGTTTGCCTCTTCCCTGTCAGATCACTGG
GCTCACACATGCAATTAAAATCAACCGCACTTATAATGGGCATGATCATC
TTCGGGACTTGTTTGGGCCTTCCGCACCTGTATCCGTGGAGAAGTGGGCC
CAAGCGCCTGGGTCCACCACCTTCTCCTTCCAGCATGTCTTGGTGCCGCT
CCTTTCATGTCCTGACATCAGAATCAATCCGTAAATCAGTCCTAGACCTG
GAGCAACGTGCTTTATGCGGCACTTTACGGGTCCAAGGGCGCAGGTTGGC
CGATCCCAAAGAAGTTCTTTCCGAGCATGACAAGCTGCAATTAACGAAGG
TTGCCAAGAGCCTTGGCCGTATAAAAAAGAAGCCCCCACCCACGCAGCAA
ATATTTGAAGCGTCTACAGCCGCCATGCGGAAAATGGGTACGTCCGCCAA
GATAGCCCAACATTTGGTCATGTGGCCCCCTGCCAAAGGCATTGTCATGG
AGGTGAAGATAATTTGGATCTAG
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Coding sequence (CDS) from alignment at chr16:648201..649273+

>NO16G02220.1 ID=NO16G02220.1|Name=NO16G02220.1|organism=Nannochloropsis oceanica|type=CDS|length=558bp|location=Sequence derived from alignment at chr16:648201..649273+ (Nannochloropsis oceanica)
ATGGCTAAGCGACAGAAGCCGCCGAGGGGGACTGATCTGCGAGGAGCCAT
TTTGGACAGGCTCTTGGTAGATACCAGATCACTGGGCTCACACATGCAAT
TAAAATCAACCGCACTTATAATGGGCATGATCATCTTCGGGACTTGTTTG
GGCCTTCCGCACCTGTATCCGTGGAGAAGTGGGCCCAAGCGCCTGGGTCC
ACCACCTTCTCCTTCCAGCATGTCTTGGTGCCGCTCCTTTCATGTCCTGA
CATCAGAATCAATCCGTAAATCAGTCCTAGACCTGGAGCAACGTGCTTTA
TGCGGCACTTTACGGGTCCAAGGGCGCAGGTTGGCCGATCCCAAAGAAGT
TCTTTCCGAGCATGACAAGCTGCAATTAACGAAGGTTGCCAAGAGCCTTG
GCCGTATAAAAAAGAAGCCCCCACCCACGCAGCAAATATTTGAAGCGTCT
ACAGCCGCCATGCGGAAAATGGGTACGTCCGCCAAGATAGCCCAACATTT
GGTCATGTGGCCCCCTGCCAAAGGCATTGTCATGGAGGTGAAGATAATTT
GGATCTAG
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Synonyms
Publications