NO16G02180.1, NO16G02180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02180.1
Unique NameNO16G02180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length924
Alignment locationchr16:633556..635448 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:633556..635448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02180.1 vs.
Match: XP_005854177.1 (protein phosphatase 1, catalytic subunit, partial [Nannochloropsis gaditana CCMP526]; EKU22188.1 protein phosphatase 1, catalytic subunit, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 603.6 bits (1555), Expect = 3.400e-169
Identity = 288/307 (93.81%), Postives = 294/307 (95.77%), Query Frame = 0 
Query:    1 MLCIKAKDVFMQQSMLLELEAPIKICGDIHGQYYDLLRLFEYGGFPPNANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFILRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAVIDEKIFCMHGGLSPDLNSLEEIKEIMRPTDVPDTGLLCDLLWADPDKDIMGWGENDRGVSYTFGEDVVAGFLKQHDLDLICRAHQVVEDGYEFFARRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKKQRYAYAGLGGQAMGGGVIGGGGGGRPATPPKGPGLPGNGKK 308
            MLC K+KDVFM+QSMLLELEAPIKICGDIHGQYYDLLRLFEYGGFPPNANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFILRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAVIDEKIFCMHGGLSP+L SLEEIK+IMRPTDVPDTGLLCDLLWADPDKDIMGWG+NDRGVSYTFGEDV A FLKQHDLDLICRAHQVVEDGYEFFARRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKKQRYAYAGL G  +G G   GGGGGRPATPPK PGL GNGKK
Sbjct:   95 MLCNKSKDVFMEQSMLLELEAPIKICGDIHGQYYDLLRLFEYGGFPPNANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFILRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAVIDEKIFCMHGGLSPELTSLEEIKDIMRPTDVPDTGLLCDLLWADPDKDIMGWGDNDRGVSYTFGEDVAASFLKQHDLDLICRAHQVVEDGYEFFARRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKKQRYAYAGLTGAGIGLGA--GGGGGRPATPPKAPGLMGNGKK 399
The following BLAST results are available for this feature:
BLAST of NO16G02180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854177.13.400e-16993.81protein phosphatase 1, catalytic subunit, partial ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02180NO16G02180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02180.1NO16G02180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02180.1.cds1NO16G02180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02180.1.cds2NO16G02180.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02180.1.cds3NO16G02180.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02180.1.cds4NO16G02180.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02180.1.cds5NO16G02180.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02180.1.cds6NO16G02180.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02180.1 ID=NO16G02180.1|Name=NO16G02180.1|organism=Nannochloropsis oceanica|type=mRNA|length=924bp
ATGCTGTGTATCAAGGCGAAGGACGTGTTCATGCAACAGTCGATGCTGTT
GGAGTTGGAGGCGCCGATTAAAATTTGTGGGGACATTCATGGGCAGTACT
ATGACTTATTGCGGCTGTTCGAGTACGGGGGCTTTCCACCTAATGCCAAC
TATCTCTTCCTGGGTGATTACGTCGACCGGGGAAAGCAGTCCCTAGAGAC
GATCTGCCTCCTCCTGGCCTACAAAATAAAATACCCGGAAAACTTCTTCA
TCCTTCGTGGCAACCACGAGTGTGCTTCTATTAACCGCATTTATGGTTTC
TATGACGAGTGCAAACGCCGCTACAACATCAAGCTCTGGAAGACGTTCAC
AGACTGCTTCAACTGCCTCCCCATCGCCGCAGTCATCGACGAGAAGATCT
TCTGCATGCACGGCGGCCTCTCGCCGGACCTGAATTCACTAGAGGAAATA
AAGGAAATCATGCGCCCCACCGACGTGCCAGATACGGGGCTCTTGTGCGA
CTTGCTGTGGGCGGACCCAGACAAGGACATCATGGGTTGGGGCGAAAACG
ACAGAGGGGTGAGCTATACGTTTGGGGAGGATGTGGTGGCTGGCTTTTTG
AAGCAGCACGACTTGGACTTGATCTGTAGAGCGCATCAGGTGGTAGAGGA
CGGCTATGAGTTCTTCGCACGGCGGCAATTGGTCACAATTTTCTCAGCGC
CCAACTATTGCGGCGAATTCGACAATGCGGGCGCAATGATGAGCGTGGAC
GAGACATTGATGTGCTCGTTCCAGATCCTCAAGCCCGCAGAAAAGAAACA
GAGATACGCCTATGCGGGTTTAGGGGGGCAAGCGATGGGGGGAGGAGTCA
TTGGAGGAGGGGGAGGAGGAAGGCCGGCGACGCCACCAAAGGGGCCGGGG
CTGCCTGGGAATGGAAAGAAGTAG
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protein sequence of NO16G02180.1

>NO16G02180.1-protein ID=NO16G02180.1-protein|Name=NO16G02180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MLCIKAKDVFMQQSMLLELEAPIKICGDIHGQYYDLLRLFEYGGFPPNAN
YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFILRGNHECASINRIYGF
YDECKRRYNIKLWKTFTDCFNCLPIAAVIDEKIFCMHGGLSPDLNSLEEI
KEIMRPTDVPDTGLLCDLLWADPDKDIMGWGENDRGVSYTFGEDVVAGFL
KQHDLDLICRAHQVVEDGYEFFARRQLVTIFSAPNYCGEFDNAGAMMSVD
ETLMCSFQILKPAEKKQRYAYAGLGGQAMGGGVIGGGGGGRPATPPKGPG
LPGNGKK*
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mRNA from alignment at chr16:633556..635448-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02180.1 ID=NO16G02180.1|Name=NO16G02180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1893bp|location=Sequence derived from alignment at chr16:633556..635448- (Nannochloropsis oceanica)
ATGCTGTGTATCAAGGCGAAGGACGTGTTCATGCAACAGTCGATGCTGTT
GGAGTTGGAGGCGCCGATTAAAATTTGTGGGGACATTCATGGGCAGTACT
ATGACTTATTGCGGCTGTTCGAGTACGGGGGCTTTCCACCTAATGCCAAC
TATCTCTTCCTGGGGTAAGGAGGGGGGAGAGGGAAGAAGGGAGGGGAGAG
GGAGGGAGGAAGAAAGTAGGGAGGGAAGGACGAAAAAAGATGCATTTACT
GCCACAAGTGCATGCTTCCGATAACCACTTGTGCGTAAAGATGAGCGCTT
GGATTACTGTAAACTCATCTCCTTCCCTCCATCATTACCACAGTGATTAC
GTCGACCGGGGAAAGCAGTCCCTAGAGACGATCTGCCTCCTCCTGGCCTA
CAAAATAAAATACCCGGAAAACTTCTTCATCCTTCGTGGCAACCACGAGT
GTGCTTCTATTAACCGCATTTATGGTTTCTATGACGAGTGCAAACGCCGC
TACAACATCAAGCTCTGGAAGGTGCGTCGGTTGCTGCCCTTCATCCTTCC
TTTTCTTCCTCCTTCCCTCCCACCCCTATCTGCCCCCCTAACTGTCTTAT
AATTGTTCTTTATCTCCGCGTCATGACTCCCTTCACTCGTCCGTCCCTCC
TTCCTTCCCTCCTTCCCTCCTTCCCTCCCATTCTTAGACGTTCACAGACT
GCTTCAACTGCCTCCCCATCGCCGCAGTCATCGACGAGAAGATCTTCTGC
ATGCACGGCGGCCTCTCGCCGGACCTGAATTCACTAGAGGAAATAAAGGA
AATCATGCGCCCCACCGACGTGCCAGATACGGGGCTCTTGTGCGACTTGC
TGTGGGCGGACCCAGACAAGGACATCATGGGTTGGGGCGAAAACGACAGA
GGGGTAAGGGGGAATGAGAATAGGGAGGACGAGAGGGAGGAGTGGCTTTT
GGAGACATCAAGTAGCAGTTTCCGTAAAGTTGTACCATCCTCCTTTTTTT
ACATGACACTATCCCGACTATTTTCTTTACCGGATAAGCCGTAAGCACTT
GGGAGTGAATGGTAGCGTTTGTCCGGCTTCCTTTCTGAAGCAAGCATCAT
TTTCTCCGATGATAATGCTTTACCCTCACTCACATTCATTCATGATTCCG
CTTTATTTTACTTGTTCTTGTAGGTGAGCTATACGTTTGGGGAGGATGTG
GTGGCTGGCTTTTTGAAGCAGCACGACTTGGACTTGATCTGTAGAGCGCA
TCAGGTAGGCGCCGAGGGAGGGAGGGAGGGAGGAAGGAAGAAGGGGATAC
GAGAACATCATGACAGCCACTTGCCTTCATCCATTCATTACCCTTCCCTC
CCTCCTTCCCTCTCTCCCTCCCTCCCTCCCGCCTTCCCTCATGCAGGTGG
TAGAGGACGGCTATGAGTTCTTCGCACGGCGGCAATTGGTCACAATTTTC
TCAGCGGTACGTCCTTCCCTCCCCGCCTCCCATCCTCCTCCCCTTTCCTC
TCTCTCCTCCCCGTCAGTGTCCACTCTTATTTTTCTTCCCGCGATGACGG
TCTATGAGAAGCCGCTGCGAGTGGGGAAAATTCCGGCGTGGGAAGCGAGA
TGTTGACAAGGCTTCAGTCAAACCCACTCACCCCTCCCTGATTCCCTTCC
TCCCTCGCGCCGGCACAGCCCAACTATTGCGGCGAATTCGACAATGCGGG
CGCAATGATGAGCGTGGACGAGACATTGATGTGCTCGTTCCAGATCCTCA
AGCCCGCAGAAAAGAAACAGAGATACGCCTATGCGGGTTTAGGGGGGCAA
GCGATGGGGGGAGGAGTCATTGGAGGAGGGGGAGGAGGAAGGCCGGCGAC
GCCACCAAAGGGGCCGGGGCTGCCTGGGAATGGAAAGAAGTAG
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Coding sequence (CDS) from alignment at chr16:633556..635448-

>NO16G02180.1 ID=NO16G02180.1|Name=NO16G02180.1|organism=Nannochloropsis oceanica|type=CDS|length=924bp|location=Sequence derived from alignment at chr16:633556..635448- (Nannochloropsis oceanica)
ATGCTGTGTATCAAGGCGAAGGACGTGTTCATGCAACAGTCGATGCTGTT
GGAGTTGGAGGCGCCGATTAAAATTTGTGGGGACATTCATGGGCAGTACT
ATGACTTATTGCGGCTGTTCGAGTACGGGGGCTTTCCACCTAATGCCAAC
TATCTCTTCCTGGGTGATTACGTCGACCGGGGAAAGCAGTCCCTAGAGAC
GATCTGCCTCCTCCTGGCCTACAAAATAAAATACCCGGAAAACTTCTTCA
TCCTTCGTGGCAACCACGAGTGTGCTTCTATTAACCGCATTTATGGTTTC
TATGACGAGTGCAAACGCCGCTACAACATCAAGCTCTGGAAGACGTTCAC
AGACTGCTTCAACTGCCTCCCCATCGCCGCAGTCATCGACGAGAAGATCT
TCTGCATGCACGGCGGCCTCTCGCCGGACCTGAATTCACTAGAGGAAATA
AAGGAAATCATGCGCCCCACCGACGTGCCAGATACGGGGCTCTTGTGCGA
CTTGCTGTGGGCGGACCCAGACAAGGACATCATGGGTTGGGGCGAAAACG
ACAGAGGGGTGAGCTATACGTTTGGGGAGGATGTGGTGGCTGGCTTTTTG
AAGCAGCACGACTTGGACTTGATCTGTAGAGCGCATCAGGTGGTAGAGGA
CGGCTATGAGTTCTTCGCACGGCGGCAATTGGTCACAATTTTCTCAGCGC
CCAACTATTGCGGCGAATTCGACAATGCGGGCGCAATGATGAGCGTGGAC
GAGACATTGATGTGCTCGTTCCAGATCCTCAAGCCCGCAGAAAAGAAACA
GAGATACGCCTATGCGGGTTTAGGGGGGCAAGCGATGGGGGGAGGAGTCA
TTGGAGGAGGGGGAGGAGGAAGGCCGGCGACGCCACCAAAGGGGCCGGGG
CTGCCTGGGAATGGAAAGAAGTAG
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Synonyms
Publications