NO16G02070.7, NO16G02070.7 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02070.7
Unique NameNO16G02070.7
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1507
Alignment locationchr16:607726..609972 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:607726..609972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02070.7 vs.
Match: EWM23907.1 (sec14 cytosolic [Nannochloropsis gaditana])

HSP 1 Score: 276.9 bits (707), Expect = 5.700e-71
Identity = 135/191 (70.68%), Postives = 157/191 (82.20%), Query Frame = 0 
Query:   27 TRRPSLMSRLSSAVGTEG---EPGTPGALLRRLSTSLQFKRKGSSTPLPNVDEIPATFLASCKGNVEKAGKKWQASKQWREENDIDHILERPHPNFDTLKRVYPAYLHGRDLQGNCISVEIPGLMDVKLMKSANLTPKDMVMQMALTQEYIWEELTPGDDKTIVTLMDAKGLSLLRLGSPDCMSLIRAASE 215
            +R PSL+S  S A   +    E     +LLRR+S S+QFKRKGS  PLP+ DEIPA FLASCKGNVEKAG+KWQ SKQWREENDIDHIL+RPHP+++TLK VYPA+LHGRDLQGNCISVEIPG M+VKLMKSA L+P+DM + +AL QEY+W  LTPGDD+ IVTLMDAKGLSL RL SPD ++LIRAASE
Sbjct:   35 SRSPSLVSHSSRATTKDAQADEDSPMPSLLRRISNSIQFKRKGSHLPLPSADEIPANFLASCKGNVEKAGRKWQVSKQWREENDIDHILQRPHPHYETLKTVYPAFLHGRDLQGNCISVEIPGSMNVKLMKSAKLSPRDMALHLALVQEYVWTVLTPGDDRKIVTLMDAKGLSLTRLASPDSLALIRAASE 225
The following BLAST results are available for this feature:
BLAST of NO16G02070.7 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23907.15.700e-7170.68sec14 cytosolic [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02070NO16G02070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02070.7NO16G02070.7-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02070.7.cds1NO16G02070.7.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02070.7.cds2NO16G02070.7.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02070.7.cds3NO16G02070.7.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02070.7.cds4NO16G02070.7.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02070.7 ID=NO16G02070.7|Name=NO16G02070.7|organism=Nannochloropsis oceanica|type=mRNA|length=1507bp
ACAGGCTTTTGTCGGCCCACCTCCTCCTCTCATCTTCATAGAATTACTTG
CCGCTAGGAGAGCAGGCCACCCAAGGAAGCCACCACTACCTACCAAATCA
AAATGAGCGTCAGCAGTCCCGAAGCCGTTCTGGGATTGGACTTGAGCCAG
GAGGGGGAAGGCACTGAGACTGGGAGTGTGACCAGGCGTCCTAGCCTCAT
GAGTCGTCTGTCAAGTGCTGTGGGAACAGAGGGAGAGCCAGGGACCCCGG
GGGCGTTGCTACGGAGGCTTTCTACTTCCCTTCAATTCAAACGCAAAGGC
TCTAGCACTCCCTTACCGAATGTAGACGAGATTCCGGCGACATTTCTTGC
GTCGTGCAAGGGCAACGTGGAGAAGGCGGGCAAGAAGTGGCAAGCGTCCA
AGCAGTGGCGCGAAGAGAATGATATTGATCACATTCTCGAACGACCGCAC
CCCAACTTTGACACATTGAAGCGTGTCTATCCCGCTTATTTGCATGGGAG
GGACTTGCAGGGTAACTGCATTTCAGTAGAGATACCAGGTCTGATGGACG
TGAAGCTCATGAAATCCGCGAACTTGACGCCGAAGGACATGGTCATGCAG
ATGGCTCTAACTCAAGAGTATATCTGGGAGGAGCTCACGCCGGGGGATGA
CAAAACGATCGTCACGTTGATGGACGCCAAGGGACTGTCCTTGCTGCGCC
TAGGCTCCCCGGATTGTATGTCACTCATTCGGGCGGCTTCTGAGGTCCGT
ATCGCGCAGGGCAGAGGGGGAAAAGAGAGCGCAGGGTGTGGGAAGACACG
ACGGTGGGGAATAGAGTAGATACATCCAATCTTTCAGATACACCGCATAA
CCTACACACAGACGCTCAACAGCCACTACCCCGAACGAGTCCTCCGAATC
CTCGTCATTAACGCTCCTCGGTATGCGATATTTCTCGTCCACTAATCTTC
CGTCTTCCTTTATGTCCTGCCCAATGTCTTTCTTTGTCTGTGCTTCACAC
TCGTATTCGCTGCTTCTCGTGGAGGTGAGCCCGTACTCACCTTTCCTCCC
TCCCTTCCTCCTTCTTTTTCAGTTTCTTCGGGCCCATCTTCAAGCTTCTC
TCCACCGTCATGCCGGCCTCCCTTCGAGATCAATTCCAAATCTGTTCCTC
CGTCGACCAGTTAGAGAAATTTATCTCGCTTGATGTCCTTCCATCTGAAT
ATGGGGGGAAATGCCCGTTTAAATTGGGGGAGGCTGAGGAGGAGGTGGGG
TTGCGAACCCTTGTGATGAAAAACAATGCGGCGGCTGACGTCGCCCGGGC
TGTTAGCACATGAGGGAAGGAGTGAAAAGGAAAAGGAGGGAGGGTACAGA
GGGGGGCGATGTTTTCGGTTTTAGTTGAAGAGAACGAAGGCAGCATTTCA
TCGACACTGACAGAGACAGGATAGTACAGTTGGTATGCTTTTGCATGGTG
CGAGGGAAAGTAAAATCACAGCACGAAAATTAATTGTTGAAAGATGACGA
AAGCAAC
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protein sequence of NO16G02070.7

>NO16G02070.7-protein ID=NO16G02070.7-protein|Name=NO16G02070.7|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MSVSSPEAVLGLDLSQEGEGTETGSVTRRPSLMSRLSSAVGTEGEPGTPG
ALLRRLSTSLQFKRKGSSTPLPNVDEIPATFLASCKGNVEKAGKKWQASK
QWREENDIDHILERPHPNFDTLKRVYPAYLHGRDLQGNCISVEIPGLMDV
KLMKSANLTPKDMVMQMALTQEYIWEELTPGDDKTIVTLMDAKGLSLLRL
GSPDCMSLIRAASEVRIAQGRGGKESAGCGKTRRWGIE*
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mRNA from alignment at chr16:607726..609972+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02070.7 ID=NO16G02070.7|Name=NO16G02070.7|organism=Nannochloropsis oceanica|type=mRNA|length=2247bp|location=Sequence derived from alignment at chr16:607726..609972+ (Nannochloropsis oceanica)
ACAGGCTTTTGTCGGCCCACCTCCTCCTCTCATCTTCATAGAATTACTTG
CCGCTAGGAGAGCAGGCCACCCAAGGAAGCCACCACTACCTACCAAATCA
AAATGAGCGTCAGCAGTCCCGAAGCCGTTCTGGGATTGGACTTGAGCCAG
GAGGGGGAAGGCACTGAGACTGGGAGTGTGACCAGGCGTCCTAGCCTCAT
GAGTCGTCTGTCAAGTGCTGTGGGAACAGAGGGAGAGCCAGGGACCCCGG
GGGCGTTGCTACGGAGGCTTTCTACTTCCCTTCAATTCAAACGCAAAGGC
TCTAGCACTCCCTTACCGAATGTAGACGAGATTCCGGCGACATTTCTTGC
GTCGTGCAAGGGCAACGTGGAGAAGGCGGGCAAGAAGTGGCAAGCGTCCA
AGCAGTGGCGCGAAGAGAATGATATTGGTGAGTGCGTAAATGTTGAATTT
TTGGATCCATTGGAAGGCAGGTCTTTTCAGAAGTTTCTCGATATGCTTGG
GTAGGACGGAGACTTGGAGGAGGAAAGAGATTGCTGGCTCCTCTTTTAAG
GGGAAACGATTGGTCAAGCGTGGTGGTTTTTGGTCATTCCCGGGACAAGC
GTCAGTACCATTGCCAAGAAAAGCCGTGCAGCCTATTGCCCAGAATCTTG
TAGGGCGTGACGTGTATTCTCTTCTTCCCTCCTCTCTCTATCTATCCATC
CATCCATCCATCCATCCATCCATCCCCTTTTGGAGCTCTCACACGGTATG
TCCTCCTTTCTTCTTCTTCTTCCCCTTCAGATCACATTCTCGAACGACCG
CACCCCAACTTTGACACATTGAAGCGTGTCTATCCCGCTTATTTGCATGG
GAGGGACTTGCAGGGTAACTGCATTTCAGTAGAGATACCAGGTTTGAACG
AGGGATGGAAGGAGAGAGGGAGGGAGAAAGGAAAAGCCGGAAGCGTTGGG
TGGGCCTCCCTTCACAAATTGGTGAGATTGATGGGCGTGAAGCTCATGAA
TATCTCCATGAATGCTCAAGGACATGGTTATGTCCATGACGTATGCACAA
GCTCGTATCCCCTCGTCCCTCCCTTCCTCCCTCCTTCCCTCGCTTCTCCC
CTAGGTCTGATGGACGTGAAGCTCATGAAATCCGCGAACTTGACGCCGAA
GGACATGGTCATGCAGATGGCTCTAACTCAAGAGTATATCTGGGAGGAGC
TCACGCCGGGGGATGACAAAACGGTTCGTACGGAGGGAAGGCCCTGTGCT
GTGTTTTCACTCGCTTTCGCGGTTTCGCGCTTACCCCGCTTCGGGGGCAT
AAGTGTATCACAATCTGCACACGCTCGTCTCGGCACTTACCCAATACCTT
CCTCAGACACCTTCGTTTGATGCACTGGCCCGCCCTCTCACGCACAGATC
GTCACGTTGATGGACGCCAAGGGACTGTCCTTGCTGCGCCTAGGCTCCCC
GGATTGTATGTCACTCATTCGGGCGGCTTCTGAGGTCCGTATCGCGCAGG
GCAGAGGGGGAAAAGAGAGCGCAGGGTGTGGGAAGACACGACGGTGGGGA
ATAGAGTAGATACATCCAATCTTTCAGATACACCGCATAACCTACACACA
GACGCTCAACAGCCACTACCCCGAACGAGTCCTCCGAATCCTCGTCATTA
ACGCTCCTCGGTATGCGATATTTCTCGTCCACTAATCTTCCGTCTTCCTT
TATGTCCTGCCCAATGTCTTTCTTTGTCTGTGCTTCACACTCGTATTCGC
TGCTTCTCGTGGAGGTGAGCCCGTACTCACCTTTCCTCCCTCCCTTCCTC
CTTCTTTTTCAGTTTCTTCGGGCCCATCTTCAAGCTTCTCTCCACCGTCA
TGCCGGCCTCCCTTCGAGATCAATTCCAAATCTGTTCCTCCGTCGACCAG
TTAGAGAAATTTATCTCGCTTGATGTCCTTCCATCTGAATATGGGGGGAA
ATGCCCGTTTAAATTGGGGGAGGCTGAGGAGGAGGTGGGGTTGCGAACCC
TTGTGATGAAAAACAATGCGGCGGCTGACGTCGCCCGGGCTGTTAGCACA
TGAGGGAAGGAGTGAAAAGGAAAAGGAGGGAGGGTACAGAGGGGGGCGAT
GTTTTCGGTTTTAGTTGAAGAGAACGAAGGCAGCATTTCATCGACACTGA
CAGAGACAGGATAGTACAGTTGGTATGCTTTTGCATGGTGCGAGGGAAAG
TAAAATCACAGCACGAAAATTAATTGTTGAAAGATGACGAAAGCAAC
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Coding sequence (CDS) from alignment at chr16:607726..609972+

>NO16G02070.7 ID=NO16G02070.7|Name=NO16G02070.7|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at chr16:607726..609972+ (Nannochloropsis oceanica)
ATGAGCGTCAGCAGTCCCGAAGCCGTTCTGGGATTGGACTTGAGCCAGGA
GGGGGAAGGCACTGAGACTGGGAGTGTGACCAGGCGTCCTAGCCTCATGA
GTCGTCTGTCAAGTGCTGTGGGAACAGAGGGAGAGCCAGGGACCCCGGGG
GCGTTGCTACGGAGGCTTTCTACTTCCCTTCAATTCAAACGCAAAGGCTC
TAGCACTCCCTTACCGAATGTAGACGAGATTCCGGCGACATTTCTTGCGT
CGTGCAAGGGCAACGTGGAGAAGGCGGGCAAGAAGTGGCAAGCGTCCAAG
CAGTGGCGCGAAGAGAATGATATTGATCACATTCTCGAACGACCGCACCC
CAACTTTGACACATTGAAGCGTGTCTATCCCGCTTATTTGCATGGGAGGG
ACTTGCAGGGTAACTGCATTTCAGTAGAGATACCAGGTCTGATGGACGTG
AAGCTCATGAAATCCGCGAACTTGACGCCGAAGGACATGGTCATGCAGAT
GGCTCTAACTCAAGAGTATATCTGGGAGGAGCTCACGCCGGGGGATGACA
AAACGATCGTCACGTTGATGGACGCCAAGGGACTGTCCTTGCTGCGCCTA
GGCTCCCCGGATTGTATGTCACTCATTCGGGCGGCTTCTGAGGTCCGTAT
CGCGCAGGGCAGAGGGGGAAAAGAGAGCGCAGGGTGTGGGAAGACACGAC
GGTGGGGAATAGAGTAG
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Synonyms
Publications