NO16G02070.4, NO16G02070.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02070.4
Unique NameNO16G02070.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1475
Alignment locationchr16:607726..609972 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:607726..609972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02070.4 vs.
Match: EWM23907.1 (sec14 cytosolic [Nannochloropsis gaditana])

HSP 1 Score: 230.3 bits (586), Expect = 1.000e-56
Identity = 117/166 (70.48%), Postives = 135/166 (81.33%), Query Frame = 0 
Query:  217 GLMDVKLMKSANLTPKDMVMQMALTQEYIWEELTPGDDKTIVTLMDAKGLSLLRLGSPDCMSLIRAASEIHRITYTQTLNSHYPERVLRILVINAPRFFGPIFKLLSTVMPASLRDQFQICSSVDQLEKFISLDVLPSEYGGKCPFKLGEAEEEVGLRTLVMKNNA 383
            G M+VKLMKSA L+P+DM + +AL QEY+W  LTPGDD+ IVTLMDAKGLSL RL SPD ++LIRAASE        TLN+HYP+RVLRILV+NAPRFFGPIF+LLSTVMPAS+RDQFQICSS   +EKFIS DVLP EYGGK   K G++EEEV LR LV +NNA
Sbjct:  157 GSMNVKLMKSAKLSPRDMALHLALVQEYVWTVLTPGDDRKIVTLMDAKGLSLTRLASPDSLALIRAASE--------TLNNHYPDRVLRILVVNAPRFFGPIFRLLSTVMPASVRDQFQICSSPADVEKFISPDVLPVEYGGKNSLKFGQSEEEVSLRALVDRNNA 314
The following BLAST results are available for this feature:
BLAST of NO16G02070.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23907.11.000e-5670.48sec14 cytosolic [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02070NO16G02070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02070.4NO16G02070.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02070.4.cds1NO16G02070.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02070.4.cds2NO16G02070.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02070.4.cds3NO16G02070.4.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02070.4.cds4NO16G02070.4.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02070.4.cds5NO16G02070.4.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02070.4 ID=NO16G02070.4|Name=NO16G02070.4|organism=Nannochloropsis oceanica|type=mRNA|length=1475bp
ACAGGCTTTTGTCGGCCCACCTCCTCCTCTCATCTTCATAGAATTACTTG
CCGCTAGGAGAGCAGGCCACCCAAGGAAGCCACCACTACCTACCAAATCA
AAATGAGCGTCAGCAGTCCCGAAGCCGTTCTGGGATTGGACTTGAGCCAG
GAGGGGGAAGGCACTGAGACTGGGAGTGTGACCAGGCGTCCTAGCCTCAT
GAGTCGTCTGTCAAGTGCTGTGGGAACAGAGGGAGAGCCAGGGACCCCGG
GGGCGTTGCTACGGAGGCTTTCTACTTCCCTTCAATTCAAACGCAAAGGC
TCTAGCACTCCCTTACCGAATGTAGACGAGATTCCGGCGACATTTCTTGC
GTCGTGCAAGGGCAACGTGGAGAAGGCGGGCAAGAAGTGGCAAGCGTCCA
AGCAGTGGCGCGAAGAGAATGATATTGATCACATTCTCGAACGACCGCAC
CCCAACTTTGACACATTGAAGCGTGTCTATCCCGCTTATTTGCATGGGAG
GGACTTGCAGGGTAACTGCATTTCAGTAGAGATACCAGGTTTGAACGAGG
GATGGAAGGAGAGAGGGAGGGAGAAAGGAAAAGCCGGAAGCGTTGGGTGG
GCCTCCCTTCACAAATTGGTGAGATTGATGGGCGTGAAGCTCATGAATAT
CTCCATGAATGCTCAAGGACATGGTTATGTCCATGACGTATGCACAAGCT
CGTATCCCCTCGTCCCTCCCTTCCTCCCTCCTTCCCTCGCTTCTCCCCTA
GGTCTGATGGACGTGAAGCTCATGAAATCCGCGAACTTGACGCCGAAGGA
CATGGTCATGCAGATGGCTCTAACTCAAGAGTATATCTGGGAGGAGCTCA
CGCCGGGGGATGACAAAACGATCGTCACGTTGATGGACGCCAAGGGACTG
TCCTTGCTGCGCCTAGGCTCCCCGGATTGTATGTCACTCATTCGGGCGGC
TTCTGAGATACACCGCATAACCTACACACAGACGCTCAACAGCCACTACC
CCGAACGAGTCCTCCGAATCCTCGTCATTAACGCTCCTCGTTTCTTCGGG
CCCATCTTCAAGCTTCTCTCCACCGTCATGCCGGCCTCCCTTCGAGATCA
ATTCCAAATCTGTTCCTCCGTCGACCAGTTAGAGAAATTTATCTCGCTTG
ATGTCCTTCCATCTGAATATGGGGGGAAATGCCCGTTTAAATTGGGGGAG
GCTGAGGAGGAGGTGGGGTTGCGAACCCTTGTGATGAAAAACAATGCGGC
GGCTGACGTCGCCCGGGCTGTTAGCACATGAGGGAAGGAGTGAAAAGGAA
AAGGAGGGAGGGTACAGAGGGGGGCGATGTTTTCGGTTTTAGTTGAAGAG
AACGAAGGCAGCATTTCATCGACACTGACAGAGACAGGATAGTACAGTTG
GTATGCTTTTGCATGGTGCGAGGGAAAGTAAAATCACAGCACGAAAATTA
ATTGTTGAAAGATGACGAAAGCAAC
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protein sequence of NO16G02070.4

>NO16G02070.4-protein ID=NO16G02070.4-protein|Name=NO16G02070.4|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MSVSSPEAVLGLDLSQEGEGTETGSVTRRPSLMSRLSSAVGTEGEPGTPG
ALLRRLSTSLQFKRKGSSTPLPNVDEIPATFLASCKGNVEKAGKKWQASK
QWREENDIDHILERPHPNFDTLKRVYPAYLHGRDLQGNCISVEIPGLNEG
WKERGREKGKAGSVGWASLHKLVRLMGVKLMNISMNAQGHGYVHDVCTSS
YPLVPPFLPPSLASPLGLMDVKLMKSANLTPKDMVMQMALTQEYIWEELT
PGDDKTIVTLMDAKGLSLLRLGSPDCMSLIRAASEIHRITYTQTLNSHYP
ERVLRILVINAPRFFGPIFKLLSTVMPASLRDQFQICSSVDQLEKFISLD
VLPSEYGGKCPFKLGEAEEEVGLRTLVMKNNAAADVARAVST*
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mRNA from alignment at chr16:607726..609972+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02070.4 ID=NO16G02070.4|Name=NO16G02070.4|organism=Nannochloropsis oceanica|type=mRNA|length=2247bp|location=Sequence derived from alignment at chr16:607726..609972+ (Nannochloropsis oceanica)
ACAGGCTTTTGTCGGCCCACCTCCTCCTCTCATCTTCATAGAATTACTTG
CCGCTAGGAGAGCAGGCCACCCAAGGAAGCCACCACTACCTACCAAATCA
AAATGAGCGTCAGCAGTCCCGAAGCCGTTCTGGGATTGGACTTGAGCCAG
GAGGGGGAAGGCACTGAGACTGGGAGTGTGACCAGGCGTCCTAGCCTCAT
GAGTCGTCTGTCAAGTGCTGTGGGAACAGAGGGAGAGCCAGGGACCCCGG
GGGCGTTGCTACGGAGGCTTTCTACTTCCCTTCAATTCAAACGCAAAGGC
TCTAGCACTCCCTTACCGAATGTAGACGAGATTCCGGCGACATTTCTTGC
GTCGTGCAAGGGCAACGTGGAGAAGGCGGGCAAGAAGTGGCAAGCGTCCA
AGCAGTGGCGCGAAGAGAATGATATTGGTGAGTGCGTAAATGTTGAATTT
TTGGATCCATTGGAAGGCAGGTCTTTTCAGAAGTTTCTCGATATGCTTGG
GTAGGACGGAGACTTGGAGGAGGAAAGAGATTGCTGGCTCCTCTTTTAAG
GGGAAACGATTGGTCAAGCGTGGTGGTTTTTGGTCATTCCCGGGACAAGC
GTCAGTACCATTGCCAAGAAAAGCCGTGCAGCCTATTGCCCAGAATCTTG
TAGGGCGTGACGTGTATTCTCTTCTTCCCTCCTCTCTCTATCTATCCATC
CATCCATCCATCCATCCATCCATCCCCTTTTGGAGCTCTCACACGGTATG
TCCTCCTTTCTTCTTCTTCTTCCCCTTCAGATCACATTCTCGAACGACCG
CACCCCAACTTTGACACATTGAAGCGTGTCTATCCCGCTTATTTGCATGG
GAGGGACTTGCAGGGTAACTGCATTTCAGTAGAGATACCAGGTTTGAACG
AGGGATGGAAGGAGAGAGGGAGGGAGAAAGGAAAAGCCGGAAGCGTTGGG
TGGGCCTCCCTTCACAAATTGGTGAGATTGATGGGCGTGAAGCTCATGAA
TATCTCCATGAATGCTCAAGGACATGGTTATGTCCATGACGTATGCACAA
GCTCGTATCCCCTCGTCCCTCCCTTCCTCCCTCCTTCCCTCGCTTCTCCC
CTAGGTCTGATGGACGTGAAGCTCATGAAATCCGCGAACTTGACGCCGAA
GGACATGGTCATGCAGATGGCTCTAACTCAAGAGTATATCTGGGAGGAGC
TCACGCCGGGGGATGACAAAACGGTTCGTACGGAGGGAAGGCCCTGTGCT
GTGTTTTCACTCGCTTTCGCGGTTTCGCGCTTACCCCGCTTCGGGGGCAT
AAGTGTATCACAATCTGCACACGCTCGTCTCGGCACTTACCCAATACCTT
CCTCAGACACCTTCGTTTGATGCACTGGCCCGCCCTCTCACGCACAGATC
GTCACGTTGATGGACGCCAAGGGACTGTCCTTGCTGCGCCTAGGCTCCCC
GGATTGTATGTCACTCATTCGGGCGGCTTCTGAGGTCCGTATCGCGCAGG
GCAGAGGGGGAAAAGAGAGCGCAGGGTGTGGGAAGACACGACGGTGGGGA
ATAGAGTAGATACATCCAATCTTTCAGATACACCGCATAACCTACACACA
GACGCTCAACAGCCACTACCCCGAACGAGTCCTCCGAATCCTCGTCATTA
ACGCTCCTCGGTATGCGATATTTCTCGTCCACTAATCTTCCGTCTTCCTT
TATGTCCTGCCCAATGTCTTTCTTTGTCTGTGCTTCACACTCGTATTCGC
TGCTTCTCGTGGAGGTGAGCCCGTACTCACCTTTCCTCCCTCCCTTCCTC
CTTCTTTTTCAGTTTCTTCGGGCCCATCTTCAAGCTTCTCTCCACCGTCA
TGCCGGCCTCCCTTCGAGATCAATTCCAAATCTGTTCCTCCGTCGACCAG
TTAGAGAAATTTATCTCGCTTGATGTCCTTCCATCTGAATATGGGGGGAA
ATGCCCGTTTAAATTGGGGGAGGCTGAGGAGGAGGTGGGGTTGCGAACCC
TTGTGATGAAAAACAATGCGGCGGCTGACGTCGCCCGGGCTGTTAGCACA
TGAGGGAAGGAGTGAAAAGGAAAAGGAGGGAGGGTACAGAGGGGGGCGAT
GTTTTCGGTTTTAGTTGAAGAGAACGAAGGCAGCATTTCATCGACACTGA
CAGAGACAGGATAGTACAGTTGGTATGCTTTTGCATGGTGCGAGGGAAAG
TAAAATCACAGCACGAAAATTAATTGTTGAAAGATGACGAAAGCAAC
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Coding sequence (CDS) from alignment at chr16:607726..609972+

>NO16G02070.4 ID=NO16G02070.4|Name=NO16G02070.4|organism=Nannochloropsis oceanica|type=CDS|length=1179bp|location=Sequence derived from alignment at chr16:607726..609972+ (Nannochloropsis oceanica)
ATGAGCGTCAGCAGTCCCGAAGCCGTTCTGGGATTGGACTTGAGCCAGGA
GGGGGAAGGCACTGAGACTGGGAGTGTGACCAGGCGTCCTAGCCTCATGA
GTCGTCTGTCAAGTGCTGTGGGAACAGAGGGAGAGCCAGGGACCCCGGGG
GCGTTGCTACGGAGGCTTTCTACTTCCCTTCAATTCAAACGCAAAGGCTC
TAGCACTCCCTTACCGAATGTAGACGAGATTCCGGCGACATTTCTTGCGT
CGTGCAAGGGCAACGTGGAGAAGGCGGGCAAGAAGTGGCAAGCGTCCAAG
CAGTGGCGCGAAGAGAATGATATTGATCACATTCTCGAACGACCGCACCC
CAACTTTGACACATTGAAGCGTGTCTATCCCGCTTATTTGCATGGGAGGG
ACTTGCAGGGTAACTGCATTTCAGTAGAGATACCAGGTTTGAACGAGGGA
TGGAAGGAGAGAGGGAGGGAGAAAGGAAAAGCCGGAAGCGTTGGGTGGGC
CTCCCTTCACAAATTGGTGAGATTGATGGGCGTGAAGCTCATGAATATCT
CCATGAATGCTCAAGGACATGGTTATGTCCATGACGTATGCACAAGCTCG
TATCCCCTCGTCCCTCCCTTCCTCCCTCCTTCCCTCGCTTCTCCCCTAGG
TCTGATGGACGTGAAGCTCATGAAATCCGCGAACTTGACGCCGAAGGACA
TGGTCATGCAGATGGCTCTAACTCAAGAGTATATCTGGGAGGAGCTCACG
CCGGGGGATGACAAAACGATCGTCACGTTGATGGACGCCAAGGGACTGTC
CTTGCTGCGCCTAGGCTCCCCGGATTGTATGTCACTCATTCGGGCGGCTT
CTGAGATACACCGCATAACCTACACACAGACGCTCAACAGCCACTACCCC
GAACGAGTCCTCCGAATCCTCGTCATTAACGCTCCTCGTTTCTTCGGGCC
CATCTTCAAGCTTCTCTCCACCGTCATGCCGGCCTCCCTTCGAGATCAAT
TCCAAATCTGTTCCTCCGTCGACCAGTTAGAGAAATTTATCTCGCTTGAT
GTCCTTCCATCTGAATATGGGGGGAAATGCCCGTTTAAATTGGGGGAGGC
TGAGGAGGAGGTGGGGTTGCGAACCCTTGTGATGAAAAACAATGCGGCGG
CTGACGTCGCCCGGGCTGTTAGCACATGA
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Synonyms
Publications