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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr16 | genome | chr16:601356..604217 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO16G02050.1 vs.
Match: EWM23911.1 (START-like domain protein [Nannochloropsis gaditana]) HSP 1 Score: 484.6 bits (1246), Expect = 4.400e-133 Identity = 282/519 (54.34%), Postives = 347/519 (66.86%), Query Frame = 0
Query: 23 LRRRSKYSNKTSDDPAPATPKAGSARGSLFSSHHLFRTKRPVKPHGVSGTEMCPPSSTTSDRGSSNSLPIIATPSLSTSTDTPNLATALDKVLHCFAVDRVVAGMELLCALEARLAREGEGEEA------KEVQSRMQEPEMAARLELIRLRGLQCKELLTSAETTEGWTLVSEHGGTATYFQPVSSSSSSSSSSSSSSKSPVLIEEGMEEEYGLDSAHLIRVRLEGEVACSPMEQLAAMREAEQYQNWMPLCQLSALLHREGNADQVLWWSMGIPGMFTWDVLLHAWGADCMLEDGSVVIIGGSILTSDKVKTADLPPPPKGWASWRISLHQFRIRFKVTSPNTSHTTVSFVLDPKLRAKSLVNYVIKKGAALSLTFLRRHAERVLTAGPAHPLFPTLLSDPFYTTFMAPRVLWYVQQHHLSSTREGGGKEERKGEVPAVLRLLKVDLAKAEASNPYPDYRANSSSLHSFPSFPSSSFFSSFSLRDAETGKDADE-VASMQHVTKVVEEDMETKGGSE 535
LRRR S +D A+ ++ S +S HH P + + S S R ++ P+ + + NLA +L++VL C+AVDR++A LL ALE R+ + ++A K V+ MQ+PEMA RLE+IRLRG QCKEL +AETTEGWTLVS+HGGTATYFQP+ + + +S + +E+GM E D H IR+R+EGEVACSPMEQLAAMREA+QY+ WMPLC S LLHREGNADQVLWWSMGIP MFTWDVLLHAWGADCMLEDGSVVI+GGSI SD+V LP PP GW SWR+SLHQFRIRFKV SPNTSH T SF+LDPKLRAK+LVNYVIK+GAALSL+FLR HAE+VL+ G AHPLFP LL+DPFY +F+APRVLWYV+Q HLS+T E K E G VPA+LRLL +DLAKAEA +PYP R +S+ P PS ++ A+ DE + + ++K +E GG E
Sbjct: 36 LRRRHPQSGHVTDI---ASRNTDASISSQYSPHHRIGKHNPEERRCRQQRPITSSSPPQSSRKEADRSPL--RHGVLIPVEPLNLAASLEEVLRCYAVDRLMASAALLSALEQRIGIALKSDDALVREPAKVVRGCMQKPEMAKRLEVIRLRGSQCKELTNAAETTEGWTLVSQHGGTATYFQPLGVTGRGKTEEASLQRKQE-VEDGMVGEEVADPEHSIRIRVEGEVACSPMEQLAAMREADQYKLWMPLCLESELLHREGNADQVLWWSMGIPRMFTWDVLLHAWGADCMLEDGSVVIVGGSIRASDRVPPERLPLPPAGWGSWRVSLHQFRIRFKVVSPNTSHITASFILDPKLRAKTLVNYVIKRGAALSLSFLRSHAEKVLSLGAAHPLFPVLLADPFYRSFLAPRVLWYVRQ-HLSTTAEAARKGEDDG-VPAILRLLHIDLAKAEACDPYPPARTTAST--DPPPGPSRAWEPKDDKEGAKEKDKGDECLGRVPSISKGLEALKGAGGGEE 544
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO16G02050.1 ID=NO16G02050.1|Name=NO16G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2711bp
GGGGTGGGGAGGTTGCTCGCTGCCCGTTCTCATGTTGATGTCAAAACTTG
TATTTTGTTGTGTTTTTATTGGCACACCACACATACGCCCCACACGGGCG
TATTGATAAGGCATGCCTTTCTCGTATACTCCCTCCTTTGGCCACAGTAT
TCGCCCCACTGGGGCATGCGCAGAGAACTACGTCCGACCTCCGCTTGATG
CAGGACACGACTGCAGCAGCACGTGCAACAGGACCACTATAGTGTAACAC
CAAGCCGCCTCGGCCTTGAAATTAACATTATGGAGGAGGGGCATCGAAAT
GCGTCGGGGGGTCTACTGTCTATGATGACGGTCAGCACCAATCGTCTCCG
TCGTCGTTCCAAGTATTCCAACAAGACGAGCGACGACCCCGCCCCCGCCA
CTCCCAAGGCAGGATCTGCCCGGGGTTCCCTCTTCTCCTCTCATCATCTC
TTCCGCACAAAAAGACCGGTCAAACCTCATGGCGTGTCAGGGACAGAGAT
GTGCCCTCCCTCTTCCACCACCAGCGACAGGGGAAGCAGCAACAGCCTTC
CGATCATCGCCACCCCGTCCCTATCGACCTCGACCGACACCCCAAACCTT
GCCACTGCCCTGGACAAGGTCCTACATTGCTTTGCTGTTGATCGCGTGGT
GGCAGGGATGGAGTTGCTTTGTGCACTGGAGGCCCGTTTGGCCCGGGAGG
GAGAGGGGGAGGAAGCTAAGGAAGTGCAAAGTAGGATGCAAGAACCCGAG
ATGGCTGCGAGGCTGGAATTGATTCGGTTGCGCGGGCTGCAGTGCAAGGA
GCTGCTGACTTCGGCAGAGACGACAGAGGGGTGGACATTGGTTTCGGAGC
ATGGAGGAACAGCGACGTATTTCCAACCCGTGAGTAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAAATCGCCAGTGCTCATCGAGGAAGG
GATGGAAGAGGAATACGGCCTCGACAGCGCGCACCTTATCCGTGTCCGCT
TGGAAGGGGAAGTGGCTTGCTCGCCCATGGAGCAACTGGCCGCCATGCGC
GAGGCAGAGCAATATCAAAACTGGATGCCGTTGTGCCAGCTATCTGCCCT
ACTCCACCGCGAAGGGAACGCAGATCAGGTCCTGTGGTGGTCGATGGGCA
TACCGGGAATGTTCACGTGGGACGTCTTGCTCCACGCCTGGGGGGCTGAC
TGCATGCTCGAAGACGGGTCTGTTGTCATCATCGGAGGATCCATTCTCAC
CTCGGACAAGGTCAAGACAGCGGACCTTCCCCCTCCCCCAAAGGGATGGG
CGTCATGGCGCATTTCTCTGCATCAGTTTCGGATTCGTTTCAAGGTGACT
TCACCCAACACCAGTCACACCACAGTGTCATTTGTCTTAGATCCGAAGCT
GCGGGCGAAGTCCCTCGTCAATTATGTCATCAAAAAGGGAGCCGCTCTCA
GCCTTACTTTTCTGCGCCGGCACGCCGAGCGCGTCCTCACGGCGGGACCT
GCCCATCCCCTCTTCCCCACCCTCCTCTCTGACCCCTTTTATACGACGTT
TATGGCGCCCCGAGTTTTGTGGTACGTTCAGCAACACCACCTCTCCAGCA
CCAGGGAGGGAGGGGGGAAGGAAGAGAGGAAAGGGGAGGTGCCAGCGGTC
TTGCGGTTGTTGAAAGTTGACCTGGCCAAGGCGGAGGCATCGAACCCATA
CCCGGACTATCGGGCAAACTCTTCCTCTCTCCACTCCTTTCCCTCTTTTC
CCTCCTCCTCCTTCTTCTCCTCCTTCTCCTTAAGAGATGCAGAGACGGGA
AAGGATGCAGATGAAGTGGCGTCGATGCAGCATGTGACCAAAGTGGTGGA
GGAGGACATGGAGACAAAGGGAGGGAGCGAAAGCGAGAAGTTGGCAAGTA
CGACGGAGGCAACAGCCATGGAGGAGCCGCTTGAATATACGAAGACGCTC
TTTATATGGCGGCGTGTATTGCTGATGTTTTTGGGCGTGTGCTGCTGTGT
CGGGATCTTGGTATACTATGTGGTTGTGTGGTCATAAGTCAGGTGAAAGG
AGGGAAGGAGAGAAGGAGGAAGGGAGGTAGGGAGGAAACGGAAGAAGAGA
AGGAGTGTGTTTTGAGATTGCGCCATACACTTATGCCTGGAGAGTGATAA
AGGGAAGGCAGAGGAGAGGCCTACCGGAGTGAAAGGGAAGAGAAGAGAAG
AGAAGGATGGTTTATGTCTTGTGTTTCGTTGGCGTCCAAAATGAATACAT
GCGTATGTTGTGTACATAAATATTTATGCAAATTCAAAAAACGCGAAGAG
ATTAGAAAGGGAAACAAAAAAGAAAAGAGAGGAGCATGCTAGGGCAGGAG
CTCTTACAGATGTAGTCAAGCTACCTCTGTCAGCGTGTGGGAAGAGAAGA
ATTTTGTGTATGTTGTAGTCAAGCTAATGGCACTGAAAGTGATTTGCGGG
GGGGGGGAGACACGGCCGAGAGAAAACTCGGGAATATCATTTAAACAGCA
GGAATCTTGCCAGTGCGTGCTTTTCGGGAGGAAAGAGCAACGCAACGGCT
TAGAAACTTATTTGTCTCGTCACCGTCAGGAAAGAAAAAGTTCAACCAAG
AGAAGGAAAAAGGCAGGCAGGCAGAGAAGATCTATCCGCGTTTGATGCCC
AGAAATTAAATCGTTACAACCAAAGGACAAGAAAGAAACAAAAAGGAAGG
ATACGGAAATG back to topprotein sequence of NO16G02050.1 >NO16G02050.1-protein ID=NO16G02050.1-protein|Name=NO16G02050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=586bp
MEEGHRNASGGLLSMMTVSTNRLRRRSKYSNKTSDDPAPATPKAGSARGS
LFSSHHLFRTKRPVKPHGVSGTEMCPPSSTTSDRGSSNSLPIIATPSLST
STDTPNLATALDKVLHCFAVDRVVAGMELLCALEARLAREGEGEEAKEVQ
SRMQEPEMAARLELIRLRGLQCKELLTSAETTEGWTLVSEHGGTATYFQP
VSSSSSSSSSSSSSSKSPVLIEEGMEEEYGLDSAHLIRVRLEGEVACSPM
EQLAAMREAEQYQNWMPLCQLSALLHREGNADQVLWWSMGIPGMFTWDVL
LHAWGADCMLEDGSVVIIGGSILTSDKVKTADLPPPPKGWASWRISLHQF
RIRFKVTSPNTSHTTVSFVLDPKLRAKSLVNYVIKKGAALSLTFLRRHAE
RVLTAGPAHPLFPTLLSDPFYTTFMAPRVLWYVQQHHLSSTREGGGKEER
KGEVPAVLRLLKVDLAKAEASNPYPDYRANSSSLHSFPSFPSSSFFSSFS
LRDAETGKDADEVASMQHVTKVVEEDMETKGGSESEKLASTTEATAMEEP
LEYTKTLFIWRRVLLMFLGVCCCVGILVYYVVVWS* back to topmRNA from alignment at chr16:601356..604217- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO16G02050.1 ID=NO16G02050.1|Name=NO16G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2862bp|location=Sequence derived from alignment at chr16:601356..604217- (Nannochloropsis oceanica)
GGGGTGGGGAGGTTGCTCGCTGCCCGTTCTCATGTTGATGTCAAAACTTG
TATTTTGTTGTGTTTTTATTGGCACACCACACATACGCCCCACACGGGCG
TATTGATAAGGCATGCCTTTCTCGTATACTCCCTCCTTTGGCCACAGTAT
TCGCCCCACTGGGGCATGCGCAGAGAACTACGTCCGACCTCCGCTTGATG
CAGGACACGACTGCAGCAGCACGTGCAACAGGACCACTATAGTGTAACAC
CAAGCCGCCTCGGCCTTGAAATTAACATTATGGAGGAGGGGCATCGAAAT
GCGTCGGGGGGTCTACTGTCTATGATGACGGTCAGCACCAATCGTCTCCG
TCGTCGTTCCAAGTATTCCAACAAGACGAGCGACGACCCCGCCCCCGCCA
CTCCCAAGGCAGGATCTGCCCGGGGTTCCCTCTTCTCCTCTCATCATCTC
TTCCGCACAAAAAGACCGGTCAAACCTCATGGCGTGTCAGGGACAGAGAT
GTGCCCTCCCTCTTCCACCACCAGCGACAGGGGAAGCAGCAACAGCCTTC
CGATCATCGCCACCCCGTCCCTATCGACCTCGACCGACACCCCAAACCTT
GCCACTGCCCTGGACAAGGTCCTACATTGCTTTGCTGTTGATCGCGTGGT
GGCAGGGATGGAGTTGCTTTGTGCACTGGAGGCCCGTTTGGCCCGGGAGG
GAGAGGGGGAGGAAGCTAAGGAAGTGCAAAGTAGGATGCAAGAACCCGAG
ATGGCTGCGAGGCTGGAATTGATTCGGTTGCGCGGGCTGCAGTGCAAGGA
GCTGCTGACTTCGGCAGAGACGACAGAGGGGTGGACATTGGTTTCGGAGC
ATGGAGGAACAGCGACGTATTTCCAACCCGTGAGTAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAAATCGCCAGTGCTCATCGAGGAAGG
GATGGAAGAGGAATACGGCCTCGACAGCGCGCACCTTATCCGTGTCCGCT
TGGAAGGGGAAGTGGCTTGCTCGCCCATGGAGCAACTGGCCGCCATGCGC
GAGGCAGAGCAATATCAAAACTGGATGCCGTTGTGCCAGCTATCTGCCCT
ACTCCACCGCGAAGGGAACGCAGATCAGGTCCTGTGGTGGTCGATGGGCA
TACCGGGAATGTTCACGTGGGACGTCTTGCTCCACGCCTGGGGGGCTGAC
TGCATGCTCGAAGACGGGTCTGTTGTCATCATCGGAGGATCCATTCTCAC
CTCGGACAAGGTCAAGACAGCGGACCTTCCCCCTCCCCCAAAGGGATGGG
CGTCATGGCGCATTTCTCTGCATCAGTTTCGGATTCGTTTCAAGGTGACT
TCACCCAACACCAGTCACACCACAGTGTCATTTGTCTTAGATCCGAAGCT
GCGGGCGAAGGTAAGGGATGGAAGTGTGTAGTAGCGCGCAACCTGACGTG
TTCCCTTTTGCCTTTCGCCGTGTTTCCTTTCCACAGCGCATGGTAACACG
CTGCAAGACACATGTTCACCTCATTCCCTCCTTTCCTCCTTCCTTCGCCT
CCCTCCCACAGTCCCTCGTCAATTATGTCATCAAAAAGGGAGCCGCTCTC
AGCCTTACTTTTCTGCGCCGGCACGCCGAGCGCGTCCTCACGGCGGGACC
TGCCCATCCCCTCTTCCCCACCCTCCTCTCTGACCCCTTTTATACGACGT
TTATGGCGCCCCGAGTTTTGTGGTACGTTCAGCAACACCACCTCTCCAGC
ACCAGGGAGGGAGGGGGGAAGGAAGAGAGGAAAGGGGAGGTGCCAGCGGT
CTTGCGGTTGTTGAAAGTTGACCTGGCCAAGGCGGAGGCATCGAACCCAT
ACCCGGACTATCGGGCAAACTCTTCCTCTCTCCACTCCTTTCCCTCTTTT
CCCTCCTCCTCCTTCTTCTCCTCCTTCTCCTTAAGAGATGCAGAGACGGG
AAAGGATGCAGATGAAGTGGCGTCGATGCAGCATGTGACCAAAGTGGTGG
AGGAGGACATGGAGACAAAGGGAGGGAGCGAAAGCGAGAAGTTGGCAAGT
ACGACGGAGGCAACAGCCATGGAGGAGCCGCTTGAATATACGAAGACGCT
CTTTATATGGCGGCGTGTATTGCTGATGTTTTTGGGCGTGTGCTGCTGTG
TCGGGATCTTGGTATACTATGTGGTTGTGTGGTCATAAGTCAGGTGAAAG
GAGGGAAGGAGAGAAGGAGGAAGGGAGGTAGGGAGGAAACGGAAGAAGAG
AAGGAGTGTGTTTTGAGATTGCGCCATACACTTATGCCTGGAGAGTGATA
AAGGGAAGGCAGAGGAGAGGCCTACCGGAGTGAAAGGGAAGAGAAGAGAA
GAGAAGGATGGTTTATGTCTTGTGTTTCGTTGGCGTCCAAAATGAATACA
TGCGTATGTTGTGTACATAAATATTTATGCAAATTCAAAAAACGCGAAGA
GATTAGAAAGGGAAACAAAAAAGAAAAGAGAGGAGCATGCTAGGGCAGGA
GCTCTTACAGATGTAGTCAAGCTACCTCTGTCAGCGTGTGGGAAGAGAAG
AATTTTGTGTATGTTGTAGTCAAGCTAATGGCACTGAAAGTGATTTGCGG
GGGGGGGGAGACACGGCCGAGAGAAAACTCGGGAATATCATTTAAACAGC
AGGAATCTTGCCAGTGCGTGCTTTTCGGGAGGAAAGAGCAACGCAACGGC
TTAGAAACTTATTTGTCTCGTCACCGTCAGGAAAGAAAAAGTTCAACCAA
GAGAAGGAAAAAGGCAGGCAGGCAGAGAAGATCTATCCGCGTTTGATGCC
CAGAAATTAAATCGTTACAACCAAAGGACAAGAAAGAAACAAAAAGGAAG
GATACGGAAATG back to topCoding sequence (CDS) from alignment at chr16:601356..604217- >NO16G02050.1 ID=NO16G02050.1|Name=NO16G02050.1|organism=Nannochloropsis oceanica|type=CDS|length=1758bp|location=Sequence derived from alignment at chr16:601356..604217- (Nannochloropsis oceanica)
ATGGAGGAGGGGCATCGAAATGCGTCGGGGGGTCTACTGTCTATGATGAC
GGTCAGCACCAATCGTCTCCGTCGTCGTTCCAAGTATTCCAACAAGACGA
GCGACGACCCCGCCCCCGCCACTCCCAAGGCAGGATCTGCCCGGGGTTCC
CTCTTCTCCTCTCATCATCTCTTCCGCACAAAAAGACCGGTCAAACCTCA
TGGCGTGTCAGGGACAGAGATGTGCCCTCCCTCTTCCACCACCAGCGACA
GGGGAAGCAGCAACAGCCTTCCGATCATCGCCACCCCGTCCCTATCGACC
TCGACCGACACCCCAAACCTTGCCACTGCCCTGGACAAGGTCCTACATTG
CTTTGCTGTTGATCGCGTGGTGGCAGGGATGGAGTTGCTTTGTGCACTGG
AGGCCCGTTTGGCCCGGGAGGGAGAGGGGGAGGAAGCTAAGGAAGTGCAA
AGTAGGATGCAAGAACCCGAGATGGCTGCGAGGCTGGAATTGATTCGGTT
GCGCGGGCTGCAGTGCAAGGAGCTGCTGACTTCGGCAGAGACGACAGAGG
GGTGGACATTGGTTTCGGAGCATGGAGGAACAGCGACGTATTTCCAACCC
GTGAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAATC
GCCAGTGCTCATCGAGGAAGGGATGGAAGAGGAATACGGCCTCGACAGCG
CGCACCTTATCCGTGTCCGCTTGGAAGGGGAAGTGGCTTGCTCGCCCATG
GAGCAACTGGCCGCCATGCGCGAGGCAGAGCAATATCAAAACTGGATGCC
GTTGTGCCAGCTATCTGCCCTACTCCACCGCGAAGGGAACGCAGATCAGG
TCCTGTGGTGGTCGATGGGCATACCGGGAATGTTCACGTGGGACGTCTTG
CTCCACGCCTGGGGGGCTGACTGCATGCTCGAAGACGGGTCTGTTGTCAT
CATCGGAGGATCCATTCTCACCTCGGACAAGGTCAAGACAGCGGACCTTC
CCCCTCCCCCAAAGGGATGGGCGTCATGGCGCATTTCTCTGCATCAGTTT
CGGATTCGTTTCAAGGTGACTTCACCCAACACCAGTCACACCACAGTGTC
ATTTGTCTTAGATCCGAAGCTGCGGGCGAAGTCCCTCGTCAATTATGTCA
TCAAAAAGGGAGCCGCTCTCAGCCTTACTTTTCTGCGCCGGCACGCCGAG
CGCGTCCTCACGGCGGGACCTGCCCATCCCCTCTTCCCCACCCTCCTCTC
TGACCCCTTTTATACGACGTTTATGGCGCCCCGAGTTTTGTGGTACGTTC
AGCAACACCACCTCTCCAGCACCAGGGAGGGAGGGGGGAAGGAAGAGAGG
AAAGGGGAGGTGCCAGCGGTCTTGCGGTTGTTGAAAGTTGACCTGGCCAA
GGCGGAGGCATCGAACCCATACCCGGACTATCGGGCAAACTCTTCCTCTC
TCCACTCCTTTCCCTCTTTTCCCTCCTCCTCCTTCTTCTCCTCCTTCTCC
TTAAGAGATGCAGAGACGGGAAAGGATGCAGATGAAGTGGCGTCGATGCA
GCATGTGACCAAAGTGGTGGAGGAGGACATGGAGACAAAGGGAGGGAGCG
AAAGCGAGAAGTTGGCAAGTACGACGGAGGCAACAGCCATGGAGGAGCCG
CTTGAATATACGAAGACGCTCTTTATATGGCGGCGTGTATTGCTGATGTT
TTTGGGCGTGTGCTGCTGTGTCGGGATCTTGGTATACTATGTGGTTGTGT
GGTCATAA back to top
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