NO16G01960.1, NO16G01960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01960.1
Unique NameNO16G01960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1280
Alignment locationchr16:575861..577461 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:575861..577461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01960.1 vs.
Match: EWM23889.1 (hypothetical protein Naga_100161g9 [Nannochloropsis gaditana])

HSP 1 Score: 90.9 bits (224), Expect = 3.000e-15
Identity = 62/110 (56.36%), Postives = 75/110 (68.18%), Query Frame = 0 
Query:    3 DSSNSSHALGSA-YNAVDLGKKLTGLDALVTQVEQPLHKDRFQKVQALLKKNNELIVQVMERQKDAVAAAPDQTSEAATTVEVQGGGDQEEGGECKAGG--GAEEETPLQ 110
            ++SN +   G   YNAV+ G KL GLDALV+QVEQPLH+DRFQKVQ LLKKNNELIVQVME+Q++A       T++ A   E  GGG  EE GE K  G  GA ++  LQ
Sbjct:    8 NTSNETARPGKVEYNAVEWGDKLAGLDALVSQVEQPLHQDRFQKVQGLLKKNNELIVQVMEQQREASEVPIQPTAKEAGNEE--GGG--EETGEVKEEGNTGAAQQAALQ 113
The following BLAST results are available for this feature:
BLAST of NO16G01960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23889.13.000e-1556.36hypothetical protein Naga_100161g9 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01960NO16G01960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01960.1NO16G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01960.1.cds1NO16G01960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01960.1.cds2NO16G01960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01960.1 ID=NO16G01960.1|Name=NO16G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1280bp
GAAAAAGACCGCAGCAAGGCCTGTGCGTACGTGAAAAAGGGAAGGATGCA
ATGAGAACGGCGCCTTAGATGGTCGTGCCCAAGCAATCTGAGGCGAGGGG
TACAACGGGAAACGTGAGGTGGCACATTTTGCCTTCAATCGTCTGCGGGC
GCAACACGCATGTGAGCGAGTTTGTCAGTGGCGGCTCGGCCTCGTCTAGC
CCAAGGCAATGAATGCCCTTCGTAATTTTGTTCGATGGTTGTTTTGTTTT
TTTAGGGAGCCATCTTCCTAACTGTGTTCTTGTCAAATAATGCCCAGCCG
CTCCCGTGCATAATTTCCACCCACAAGTCCCCATTTCGGCACAGGCAAAC
GGATCCAGGCCCAACTTGAACGCAAGAAACACCAGCCGTCACCAACACCC
CTTTCTCACCTGAAGAACCCCTTCTAGACCATCATGACGGACAGCAGTAA
CAGCAGCCATGCACTGGGGAGTGCGTACAACGCCGTGGACTTGGGTAAGA
AGTTGACGGGTCTCGACGCACTGGTCACGCAGGTGGAGCAGCCGCTGCAC
AAAGACCGCTTTCAGAAAGTCCAGGCGCTGCTGAAGAAGAACAACGAATT
GATTGTCCAAGTGATGGAGCGTCAAAAGGACGCTGTGGCCGCTGCCCCTG
ATCAGACCAGTGAAGCGGCTACCACGGTGGAGGTCCAAGGGGGGGGGGAC
CAAGAGGAAGGGGGGGAATGCAAGGCGGGGGGGGGGGCGGAGGAGGAAAC
ACCGCTACAAGCGAGGAACAAAAGGTGGCATTGCAGCAGTGCGCGGTAAT
GATCAAGGAATTGAACGATAATTTGACACAGGTGTACGATGTTTATGCGG
CGCTCCAACCTACCAAGGATGAGAACTAGATGAAGGAGGGAAAGGGGAGG
ACAGAAGGAGGGAAGTAGGTAGGCACATGTATAGGATAGGAGAGTAAAGG
GTCAAATTTCGTGGATAGTCTTAGCGAGTCACAGACGGAATGTGGGCGCG
ATTTGTGGTGTTGGTGAGAGTGGATGAAAGAGAGGGGCGAGAAAGGGAAT
GGATAGACACGCGCAAAAAGGAGAGGGAAAAGCATGCGCCATGAGGAAAG
GGGTAGAATAGTAACAGCACACGTCCACACGGTAAGACGAGGGAGTGAAG
CCACATGCGTGCACATGCGCGAAAAGAAAAACAATCACAGCCAGTTCCTT
CATCAACAAATGAAAAGGGAAGACGAGTAGGTCGATATTGTGCTGTGCGT
CGAATCGGAAGCCATGAGAAGCATGCCCAA
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protein sequence of NO16G01960.1

>NO16G01960.1-protein ID=NO16G01960.1-protein|Name=NO16G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MTDSSNSSHALGSAYNAVDLGKKLTGLDALVTQVEQPLHKDRFQKVQALL
KKNNELIVQVMERQKDAVAAAPDQTSEAATTVEVQGGGDQEEGGECKAGG
GAEEETPLQARNKRWHCSSAR*
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mRNA from alignment at chr16:575861..577461-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01960.1 ID=NO16G01960.1|Name=NO16G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1601bp|location=Sequence derived from alignment at chr16:575861..577461- (Nannochloropsis oceanica)
GAAAAAGACCGCAGCAAGGCCTGTGCGTACGTGAAAAAGGGAAGGATGCA
ATGAGAACGGCGCCTTAGATGGTCGTGCCCAAGCAATCTGAGGCGAGGGG
TACAACGGGAAACGTGAGGTGGCACATTTTGCCTTCAATCGTCTGCGGGC
GCAACACGCATGTGAGCGAGTTTGTCAGTGGCGGCTCGGCCTCGTCTAGC
CCAAGGCAATGAATGCCCTTCGTAATTTTGTTCGATGGTTGTTTTGTTTT
TTTAGGGAGCCATCTTCCTAACTGTGTTCTTGTCAAATAATGCCCAGCCG
CTCCCGTGCATAATTTCCACCCACAAGTCCCCATTTCGGCACAGGCAAAC
GGATCCAGGCCCAACTTGAACGCAAGAAACACCAGCCGTCACCAACACCC
CTTTCTCACCTGAAGAACCCCTTCTAGACCATCATGACGGACAGCAGTAA
CAGCAGCCATGCACTGGGGAGTGCGTACAACGCCGTGGACTTGGGTAAGA
AGTTGACGGGTCTCGACGCACTGGTCACGCAGGTGGAGCAGCCGCTGCAC
AAAGACCGCTTTCAGAAAGTCCAGGTAATTTTGATGGATTGATTGATTGG
CTTGAGACCGCGGGCATGGAGACTGAAAGGTGGGATTGGAGGAAAGTTTT
CTTACGGTGCTGTTTGCCTTATCCTTTTCCTTCCCTTTTTGTCCCTCCTT
CTCCCTATTCTTCCAAACTCAATATCTCAACCTCAAAACAGGCGCTGCTG
AAGAAGAACAACGAATTGATTGTCCAAGTGATGGAGCGTCAAAAGGACGC
TGTGGCCGCTGCCCCTGATCAGACCAGTGAAGCGGCTACCACGGTGGAGG
TCCAAGGGGGGGGGGACCAAGAGGAAGGGGGGGAATGCAAGGCGGGGGGG
GGGGCGGAGGAGGAAACACCGCTACAAGCGAGGAACAAAAGGTGGCATTG
CAGCAGTGCGCGGTAATGATCAAGGAATTGAACGATAATTTGACACAGGT
GAGGGAAGGTGGGATCTATGGATGGACGGAGGGAGGGAGGATGGGCTGTG
CTCCAGATATTCAAAAGGACGAGGAGACCTTGACTCGCGACTGTATTCCC
TCACCTCCCACCTTTCCTCCCTCCCTCTATCCATCTTTTACTTCATTTCT
AGGTGTACGATGTTTATGCGGCGCTCCAACCTACCAAGGATGAGAACTAG
ATGAAGGAGGGAAAGGGGAGGACAGAAGGAGGGAAGTAGGTAGGCACATG
TATAGGATAGGAGAGTAAAGGGTCAAATTTCGTGGATAGTCTTAGCGAGT
CACAGACGGAATGTGGGCGCGATTTGTGGTGTTGGTGAGAGTGGATGAAA
GAGAGGGGCGAGAAAGGGAATGGATAGACACGCGCAAAAAGGAGAGGGAA
AAGCATGCGCCATGAGGAAAGGGGTAGAATAGTAACAGCACACGTCCACA
CGGTAAGACGAGGGAGTGAAGCCACATGCGTGCACATGCGCGAAAAGAAA
AACAATCACAGCCAGTTCCTTCATCAACAAATGAAAAGGGAAGACGAGTA
GGTCGATATTGTGCTGTGCGTCGAATCGGAAGCCATGAGAAGCATGCCCA
A
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Coding sequence (CDS) from alignment at chr16:575861..577461-

>NO16G01960.1 ID=NO16G01960.1|Name=NO16G01960.1|organism=Nannochloropsis oceanica|type=CDS|length=366bp|location=Sequence derived from alignment at chr16:575861..577461- (Nannochloropsis oceanica)
ATGACGGACAGCAGTAACAGCAGCCATGCACTGGGGAGTGCGTACAACGC
CGTGGACTTGGGTAAGAAGTTGACGGGTCTCGACGCACTGGTCACGCAGG
TGGAGCAGCCGCTGCACAAAGACCGCTTTCAGAAAGTCCAGGCGCTGCTG
AAGAAGAACAACGAATTGATTGTCCAAGTGATGGAGCGTCAAAAGGACGC
TGTGGCCGCTGCCCCTGATCAGACCAGTGAAGCGGCTACCACGGTGGAGG
TCCAAGGGGGGGGGGACCAAGAGGAAGGGGGGGAATGCAAGGCGGGGGGG
GGGGCGGAGGAGGAAACACCGCTACAAGCGAGGAACAAAAGGTGGCATTG
CAGCAGTGCGCGGTAA
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Synonyms
Publications