NO16G01940.1, NO16G01940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01940.1
Unique NameNO16G01940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1596
Alignment locationchr16:565267..567541 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:565267..567541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01940.1 vs.
Match: EWM23908.1 (hypothetical protein Naga_100113g22 [Nannochloropsis gaditana])

HSP 1 Score: 760.4 bits (1962), Expect = 3.800e-216
Identity = 392/514 (76.26%), Postives = 437/514 (85.02%), Query Frame = 0 
Query:    1 MAASRDTPPVIMVNEPMDVHKAEERLAHYHPEHHHFYEPAKSHRGKRLLRIVIAGTGFMADSYDLFVINIALLMMTQNKSYGVLTPDVQTQISMMAIVGALAGQLFFGVLGDEFGRKTTFVITAFMTIIGTILTACVQPTQVLGMNIWQQMMLCRFLMGMGVGGEYPMASTITAESSAPQDRGRNLAAVFSMQGVGRVLCALMLLIAAFTITNTHWQWRFAIIMGAVPMILAVYFRWTAEETEAYKHQVKEKKASNLDRARNIARHVWANRVKLAGTAGSWFILDVLFYGNSLFSADVTRAMGTENNLEAKTVQNLCIQLMAMPGYILAVIFLDRIGRKRLQLIGFAGEAIIFCLMAVLFRQFQGLPALFVFMYALTFFFDDFGANTTTFVIPAEIFPTDVRSTCHGISAAFGKAGAAIGASVFLKVANMFCPGGNCRNTTDPGPQEKGIRVVFIACAMLSVIGFLWTWALVQDKPHASLEEVENIYSVEEEVEGEVEALELVVKKGSSHAAEE 515
            M+ +  +P V +   P+DV KAE+RLAHYHPEHHHFYE AKSH GKR+  IVIAGTGF+ADSYDLFVINIALLMM QNK+YGVLTPD+Q+ +S+MAIVGAL GQLF G+LGD+FGRKTTF+ TA +TI+GTIL AC QPTQ LGMNIWQQ+ML RF+MGMGVGGEYPMASTITAESSAP +RGRNLAAVFSMQGVGRVLCALMLL+AAFTI +T+WQWRFAI+MGAVPM+ AV FRW  E TEA++ +VK K+ +   R RNI   VWANRVKL GTAGSWFILDVLFYGNSLFSADVTRAMGTEN LE KTVQNL IQLMAMPGYILAVIFLDRIGRKRLQLIGF GEAIIF  MA+  +QF+GLPALFVFMYALTFFFDDFG NTTTFVIPAEIFPT+ R+TCHGISAAFGKAGAAIGA+ FLKVANMFCPG NC NT DP   +KGIRVVFI C +L+VIGFLWTWALV + PHASL   E+ Y VE E EGEVEAL   V+K    A+ +
Sbjct:    1 MSTNEPSPAVAVEMPPLDVKKAEDRLAHYHPEHHHFYE-AKSHLGKRIFTIVIAGTGFLADSYDLFVINIALLMMKQNKNYGVLTPDLQSLVSLMAIVGALCGQLFLGILGDQFGRKTTFITTAVLTIVGTILQACAQPTQFLGMNIWQQLMLFRFIMGMGVGGEYPMASTITAESSAPGERGRNLAAVFSMQGVGRVLCALMLLVAAFTIEDTNWQWRFAILMGAVPMMAAVCFRWLPE-TEAFEKEVKLKQPALGQRFRNIWVVVWANRVKLLGTAGSWFILDVLFYGNSLFSADVTRAMGTENTLEGKTVQNLIIQLMAMPGYILAVIFLDRIGRKRLQLIGFGGEAIIFAAMAIFQQQFKGLPALFVFMYALTFFFDDFGPNTTTFVIPAEIFPTEARATCHGISAAFGKAGAAIGAAAFLKVANMFCPGDNCHNTEDPALLDKGIRVVFICCTVLAVIGFLWTWALVDETPHASLSRTESRYDVEPEKEGEVEALTSRVQKARGGASSD 512
The following BLAST results are available for this feature:
BLAST of NO16G01940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23908.13.800e-21676.26hypothetical protein Naga_100113g22 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01940NO16G01940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01940.1NO16G01940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01940.1.cds1NO16G01940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01940.1.cds2NO16G01940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01940.1.cds3NO16G01940.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01940.1.cds4NO16G01940.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01940.1.cds5NO16G01940.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01940.1 ID=NO16G01940.1|Name=NO16G01940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1596bp
ATGGCAGCATCTCGTGACACCCCCCCAGTCATTATGGTAAATGAGCCTAT
GGACGTCCACAAAGCGGAGGAGCGCCTGGCACACTACCACCCTGAGCACC
ACCATTTTTATGAGCCTGCAAAATCGCACCGCGGGAAGCGCTTGCTCCGC
ATCGTCATTGCGGGAACGGGCTTCATGGCGGACTCCTACGACCTTTTTGT
CATCAATATTGCCCTGTTGATGATGACACAAAATAAGAGCTACGGCGTCC
TCACCCCTGATGTGCAGACCCAAATATCCATGATGGCTATCGTGGGCGCA
CTCGCGGGCCAGCTCTTCTTCGGTGTGCTGGGCGATGAGTTTGGTCGCAA
GACTACGTTCGTCATAACCGCCTTCATGACCATCATAGGCACTATTCTGA
CGGCTTGCGTGCAGCCCACGCAAGTCCTCGGCATGAACATCTGGCAACAA
ATGATGCTCTGCCGTTTCCTGATGGGCATGGGGGTGGGGGGGGAGTACCC
GATGGCTTCCACCATTACTGCCGAGTCTTCCGCCCCTCAGGATCGTGGAC
GCAATCTGGCTGCTGTGTTCAGCATGCAAGGTGTGGGCCGAGTGTTGTGT
GCGTTGATGCTGTTGATCGCGGCCTTCACAATTACGAACACGCACTGGCA
GTGGCGGTTCGCGATCATCATGGGGGCCGTGCCCATGATCTTAGCCGTCT
ACTTCCGATGGACGGCGGAAGAAACCGAAGCGTACAAGCACCAGGTTAAG
GAGAAGAAGGCAAGCAACTTGGATCGAGCCAGGAACATCGCCCGGCACGT
GTGGGCCAATCGGGTTAAGCTGGCCGGAACGGCGGGATCATGGTTCATTC
TCGACGTGTTGTTTTACGGGAATTCACTGTTTTCCGCCGACGTGACCCGC
GCGATGGGCACAGAAAACAACTTGGAGGCCAAGACGGTCCAGAACCTGTG
CATTCAACTCATGGCCATGCCGGGGTATATCCTCGCTGTGATATTCCTCG
ATAGGATCGGGAGGAAGAGGCTGCAATTAATCGGCTTCGCGGGAGAGGCG
ATTATTTTCTGTTTGATGGCCGTCCTATTCAGGCAGTTCCAGGGGCTGCC
CGCCCTCTTCGTGTTTATGTACGCTCTGACCTTCTTTTTTGATGACTTTG
GCGCCAATACCACGACCTTTGTCATCCCGGCTGAAATCTTCCCGACAGAC
GTGCGTTCGACGTGCCACGGCATCAGTGCGGCCTTCGGGAAAGCGGGGGC
GGCCATTGGGGCCAGTGTGTTTTTGAAAGTGGCGAACATGTTCTGCCCCG
GGGGGAATTGCCGCAATACGACGGACCCGGGGCCTCAAGAAAAAGGGATC
CGCGTGGTGTTCATTGCTTGCGCGATGCTCTCGGTGATTGGGTTCCTGTG
GACCTGGGCGTTGGTCCAAGACAAACCGCATGCTAGTTTAGAGGAGGTGG
AGAATATATATTCCGTGGAGGAGGAGGTGGAGGGGGAGGTAGAGGCTTTG
GAGTTGGTTGTGAAGAAGGGGTCAAGTCATGCCGCAGAGGAGGCGACGGG
TTTGACGGCGCCGCCGACGGTTGAGGATGAGGCGAAGGTCAGGTGA
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protein sequence of NO16G01940.1

>NO16G01940.1-protein ID=NO16G01940.1-protein|Name=NO16G01940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp
MAASRDTPPVIMVNEPMDVHKAEERLAHYHPEHHHFYEPAKSHRGKRLLR
IVIAGTGFMADSYDLFVINIALLMMTQNKSYGVLTPDVQTQISMMAIVGA
LAGQLFFGVLGDEFGRKTTFVITAFMTIIGTILTACVQPTQVLGMNIWQQ
MMLCRFLMGMGVGGEYPMASTITAESSAPQDRGRNLAAVFSMQGVGRVLC
ALMLLIAAFTITNTHWQWRFAIIMGAVPMILAVYFRWTAEETEAYKHQVK
EKKASNLDRARNIARHVWANRVKLAGTAGSWFILDVLFYGNSLFSADVTR
AMGTENNLEAKTVQNLCIQLMAMPGYILAVIFLDRIGRKRLQLIGFAGEA
IIFCLMAVLFRQFQGLPALFVFMYALTFFFDDFGANTTTFVIPAEIFPTD
VRSTCHGISAAFGKAGAAIGASVFLKVANMFCPGGNCRNTTDPGPQEKGI
RVVFIACAMLSVIGFLWTWALVQDKPHASLEEVENIYSVEEEVEGEVEAL
ELVVKKGSSHAAEEATGLTAPPTVEDEAKVR*
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mRNA from alignment at chr16:565267..567541+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01940.1 ID=NO16G01940.1|Name=NO16G01940.1|organism=Nannochloropsis oceanica|type=mRNA|length=2275bp|location=Sequence derived from alignment at chr16:565267..567541+ (Nannochloropsis oceanica)
ATGGCAGCATCTCGTGACACCCCCCCAGTCATTATGGTAAATGAGCCTAT
GGACGTCCACAAAGCGGAGGAGCGCCTGGCACACTACCACCCTGAGCACC
ACCATTTTTATGAGCCTGCAAAATCGCACCGCGGGAAGCGCTTGCTCCGC
ATCGTCATTGCGGGAACGGGCTTCATGGCGGACTCCTACGACCTTTTTGT
CATCAATATTGGTAAGTCCCTTCTCATATGATGAAGAAGGCATTCAAGCT
GATATAGGAAGGATGGACGGATGTGGACGCGTGCCACTGATCGCTTGGTG
GTGATGATTCTTTGGGCCTAGTTATACAGCCACTCTTGTCCGCCTTATTC
TTTGCTGCATCACCAACTGACTGCTTTCTTCCTTCTTCTCCTACTCCTAT
ACCCCGCTATTAGCCCTGTTGATGATGACACAAAATAAGAGCTACGGCGT
CCTCACCCCTGATGTGCAGACCCAAATATCCATGATGGCTATCGTGGGCG
CACTCGCGGGCCAGCTCTTCTTCGGTGTGCTGGGCGATGAGGTACGATAC
AGAGGGAACGATTCAGCTGTGCCACTTTTTTGCCGGATTCACTTCAGATG
CAATGAGAACCAGTCACACTCACTCTTAACTTCATCTCTCTTTCCTCACA
TATACACACATAATTCTTTTATCAGTTTGGTCGCAAGACTACGTTCGTCA
TAACCGCCTTCATGACCATCATAGGCACTATTCTGACGGCTTGCGTGCAG
GTAAGGATAAAGAGAGAGGGGGAAGAGGAGGGTTGCTCTATCAATGTACG
AGAGTCAACAATCGGGAGGTCCATCAATTGAGGGTGTTTGTTCCTGCTGG
TACTGCCTGCTTGGTCTTCTGTAGAGAATGCCGGTTGCCATGTCCTCCCT
CTCTAGTCCACATCCAGCCCACTAATCCTCCTCCCCTCCCTCCTTCCATT
CTTGTATAGCCCACGCAAGTCCTCGGCATGAACATCTGGCAACAAATGAT
GCTCTGCCGTTTCCTGATGGGCATGGGGGTGGGGGGGGAGTACCCGATGG
CTTCCACCATTACTGCCGAGTCTTCCGCCCCTCAGGATCGTGGACGCAAT
CTGGCTGCTGTGTTCAGCATGCAAGGTGTGGGCCGAGTGTTGTGTGCGTT
GATGCTGTTGATCGCGGCCTTCACAATTACGGTAAGACGGCCTCTCATAT
CGGTTCCTTTCCTGTCTCTTCCTCCTGTCAAAATGTTCTCTCACACTACC
TCCCCCTCTCCTCCTTCCGGCCCTCCCCATCATTACTTCCTCCCTATTTT
TTATCCCGCTTTCAGAACACGCACTGGCAGTGGCGGTTCGCGATCATCAT
GGGGGCCGTGCCCATGATCTTAGCCGTCTACTTCCGATGGACGGCGGAAG
AAACCGAAGCGTACAAGCACCAGGTTAAGGAGAAGAAGGCAAGCAACTTG
GATCGAGCCAGGAACATCGCCCGGCACGTGTGGGCCAATCGGGTTAAGCT
GGCCGGAACGGCGGGATCATGGTTCATTCTCGACGTGTTGTTTTACGGGA
ATTCACTGTTTTCCGCCGACGTGACCCGCGCGATGGGCACAGAAAACAAC
TTGGAGGCCAAGACGGTCCAGAACCTGTGCATTCAACTCATGGCCATGCC
GGGGTATATCCTCGCTGTGATATTCCTCGATAGGATCGGGAGGAAGAGGC
TGCAATTAATCGGCTTCGCGGGAGAGGCGATTATTTTCTGTTTGATGGCC
GTCCTATTCAGGCAGTTCCAGGGGCTGCCCGCCCTCTTCGTGTTTATGTA
CGCTCTGACCTTCTTTTTTGATGACTTTGGCGCCAATACCACGACCTTTG
TCATCCCGGCTGAAATCTTCCCGACAGACGTGCGTTCGACGTGCCACGGC
ATCAGTGCGGCCTTCGGGAAAGCGGGGGCGGCCATTGGGGCCAGTGTGTT
TTTGAAAGTGGCGAACATGTTCTGCCCCGGGGGGAATTGCCGCAATACGA
CGGACCCGGGGCCTCAAGAAAAAGGGATCCGCGTGGTGTTCATTGCTTGC
GCGATGCTCTCGGTGATTGGGTTCCTGTGGACCTGGGCGTTGGTCCAAGA
CAAACCGCATGCTAGTTTAGAGGAGGTGGAGAATATATATTCCGTGGAGG
AGGAGGTGGAGGGGGAGGTAGAGGCTTTGGAGTTGGTTGTGAAGAAGGGG
TCAAGTCATGCCGCAGAGGAGGCGACGGGTTTGACGGCGCCGCCGACGGT
TGAGGATGAGGCGAAGGTCAGGTGA
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Coding sequence (CDS) from alignment at chr16:565267..567541+

>NO16G01940.1 ID=NO16G01940.1|Name=NO16G01940.1|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at chr16:565267..567541+ (Nannochloropsis oceanica)
ATGGCAGCATCTCGTGACACCCCCCCAGTCATTATGGTAAATGAGCCTAT
GGACGTCCACAAAGCGGAGGAGCGCCTGGCACACTACCACCCTGAGCACC
ACCATTTTTATGAGCCTGCAAAATCGCACCGCGGGAAGCGCTTGCTCCGC
ATCGTCATTGCGGGAACGGGCTTCATGGCGGACTCCTACGACCTTTTTGT
CATCAATATTGCCCTGTTGATGATGACACAAAATAAGAGCTACGGCGTCC
TCACCCCTGATGTGCAGACCCAAATATCCATGATGGCTATCGTGGGCGCA
CTCGCGGGCCAGCTCTTCTTCGGTGTGCTGGGCGATGAGTTTGGTCGCAA
GACTACGTTCGTCATAACCGCCTTCATGACCATCATAGGCACTATTCTGA
CGGCTTGCGTGCAGCCCACGCAAGTCCTCGGCATGAACATCTGGCAACAA
ATGATGCTCTGCCGTTTCCTGATGGGCATGGGGGTGGGGGGGGAGTACCC
GATGGCTTCCACCATTACTGCCGAGTCTTCCGCCCCTCAGGATCGTGGAC
GCAATCTGGCTGCTGTGTTCAGCATGCAAGGTGTGGGCCGAGTGTTGTGT
GCGTTGATGCTGTTGATCGCGGCCTTCACAATTACGAACACGCACTGGCA
GTGGCGGTTCGCGATCATCATGGGGGCCGTGCCCATGATCTTAGCCGTCT
ACTTCCGATGGACGGCGGAAGAAACCGAAGCGTACAAGCACCAGGTTAAG
GAGAAGAAGGCAAGCAACTTGGATCGAGCCAGGAACATCGCCCGGCACGT
GTGGGCCAATCGGGTTAAGCTGGCCGGAACGGCGGGATCATGGTTCATTC
TCGACGTGTTGTTTTACGGGAATTCACTGTTTTCCGCCGACGTGACCCGC
GCGATGGGCACAGAAAACAACTTGGAGGCCAAGACGGTCCAGAACCTGTG
CATTCAACTCATGGCCATGCCGGGGTATATCCTCGCTGTGATATTCCTCG
ATAGGATCGGGAGGAAGAGGCTGCAATTAATCGGCTTCGCGGGAGAGGCG
ATTATTTTCTGTTTGATGGCCGTCCTATTCAGGCAGTTCCAGGGGCTGCC
CGCCCTCTTCGTGTTTATGTACGCTCTGACCTTCTTTTTTGATGACTTTG
GCGCCAATACCACGACCTTTGTCATCCCGGCTGAAATCTTCCCGACAGAC
GTGCGTTCGACGTGCCACGGCATCAGTGCGGCCTTCGGGAAAGCGGGGGC
GGCCATTGGGGCCAGTGTGTTTTTGAAAGTGGCGAACATGTTCTGCCCCG
GGGGGAATTGCCGCAATACGACGGACCCGGGGCCTCAAGAAAAAGGGATC
CGCGTGGTGTTCATTGCTTGCGCGATGCTCTCGGTGATTGGGTTCCTGTG
GACCTGGGCGTTGGTCCAAGACAAACCGCATGCTAGTTTAGAGGAGGTGG
AGAATATATATTCCGTGGAGGAGGAGGTGGAGGGGGAGGTAGAGGCTTTG
GAGTTGGTTGTGAAGAAGGGGTCAAGTCATGCCGCAGAGGAGGCGACGGG
TTTGACGGCGCCGCCGACGGTTGAGGATGAGGCGAAGGTCAGGTGA
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Synonyms
Publications