NO16G01930.1, NO16G01930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01930.1
Unique NameNO16G01930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length381
Alignment locationchr16:564036..564416 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:564036..564416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01930.1 vs.
Match: EWM23883.1 (protein of unknown function DUF1713, mitochondria [Nannochloropsis gaditana])

HSP 1 Score: 75.1 bits (183), Expect = 1.800e-10
Identity = 64/128 (50.00%), Postives = 84/128 (65.62%), Query Frame = 0 
Query:    3 TATIHTLWRRAAT---AVSLALPSTSSQRALTSSAALFPSSASCLTSGRRPIISTWTALAPTTSSSSSSSSSSSLIPSSSSPS-WFRGVLSGVLARFSSTLKKRRSKMNKHKLKKRRKLLRNKNAKNL 127
            TA + T W R AT   ++S++L S SS RAL SS  + P+S +  +S    +  +W A +  ++  + + +  SL PS   PS WF  +LSG+L R SSTLKKRRSKMNKHKLKKRRKL+RNKN KNL
Sbjct:   33 TAALRTWWSRLATPTSSMSMSLTSQSSIRALYSSPRMSPTSVASKSS---IVGGSWQASSLFSTLPAYTKTIRSLPPSPGQPSSWFGHILSGLLKRCSSTLKKRRSKMNKHKLKKRRKLMRNKNKKNL 157
The following BLAST results are available for this feature:
BLAST of NO16G01930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23883.11.800e-1050.00protein of unknown function DUF1713, mitochondria ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01930NO16G01930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01930.1NO16G01930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01930.1.cds1NO16G01930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01930.1 ID=NO16G01930.1|Name=NO16G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=381bp
ATGGCCACCGCGACCATTCATACGCTGTGGAGACGAGCGGCGACAGCAGT
CTCCCTGGCCTTGCCTTCGACAAGCAGCCAGAGGGCCCTGACCTCGTCCG
CAGCACTCTTTCCGTCTTCTGCCTCGTGTCTGACGTCGGGAAGAAGACCA
ATAATCTCCACGTGGACTGCCTTGGCACCCACGACCAGCAGCAGCAGCAG
CAGTAGCAGTAGTAGTAGCCTCATTCCTTCATCATCATCACCATCATGGT
TTCGGGGCGTGTTGAGTGGGGTCTTGGCCCGGTTCTCAAGTACATTGAAA
AAGCGGCGGTCGAAGATGAACAAACATAAGCTTAAGAAGAGGAGGAAGCT
GTTGCGTAACAAGAACGCGAAGAATTTGTAA
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protein sequence of NO16G01930.1

>NO16G01930.1-protein ID=NO16G01930.1-protein|Name=NO16G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MATATIHTLWRRAATAVSLALPSTSSQRALTSSAALFPSSASCLTSGRRP
IISTWTALAPTTSSSSSSSSSSSLIPSSSSPSWFRGVLSGVLARFSSTLK
KRRSKMNKHKLKKRRKLLRNKNAKNL*
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mRNA from alignment at chr16:564036..564416-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01930.1 ID=NO16G01930.1|Name=NO16G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=381bp|location=Sequence derived from alignment at chr16:564036..564416- (Nannochloropsis oceanica)
ATGGCCACCGCGACCATTCATACGCTGTGGAGACGAGCGGCGACAGCAGT
CTCCCTGGCCTTGCCTTCGACAAGCAGCCAGAGGGCCCTGACCTCGTCCG
CAGCACTCTTTCCGTCTTCTGCCTCGTGTCTGACGTCGGGAAGAAGACCA
ATAATCTCCACGTGGACTGCCTTGGCACCCACGACCAGCAGCAGCAGCAG
CAGTAGCAGTAGTAGTAGCCTCATTCCTTCATCATCATCACCATCATGGT
TTCGGGGCGTGTTGAGTGGGGTCTTGGCCCGGTTCTCAAGTACATTGAAA
AAGCGGCGGTCGAAGATGAACAAACATAAGCTTAAGAAGAGGAGGAAGCT
GTTGCGTAACAAGAACGCGAAGAATTTGTAA
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Coding sequence (CDS) from alignment at chr16:564036..564416-

>NO16G01930.1 ID=NO16G01930.1|Name=NO16G01930.1|organism=Nannochloropsis oceanica|type=CDS|length=381bp|location=Sequence derived from alignment at chr16:564036..564416- (Nannochloropsis oceanica)
ATGGCCACCGCGACCATTCATACGCTGTGGAGACGAGCGGCGACAGCAGT
CTCCCTGGCCTTGCCTTCGACAAGCAGCCAGAGGGCCCTGACCTCGTCCG
CAGCACTCTTTCCGTCTTCTGCCTCGTGTCTGACGTCGGGAAGAAGACCA
ATAATCTCCACGTGGACTGCCTTGGCACCCACGACCAGCAGCAGCAGCAG
CAGTAGCAGTAGTAGTAGCCTCATTCCTTCATCATCATCACCATCATGGT
TTCGGGGCGTGTTGAGTGGGGTCTTGGCCCGGTTCTCAAGTACATTGAAA
AAGCGGCGGTCGAAGATGAACAAACATAAGCTTAAGAAGAGGAGGAAGCT
GTTGCGTAACAAGAACGCGAAGAATTTGTAA
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Synonyms
Publications