NO16G01880.1, NO16G01880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01880.1
Unique NameNO16G01880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length818
Alignment locationchr16:548635..549452 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:548635..549452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO16G01880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01880NO16G01880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01880.1NO16G01880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01880.1.cds1NO16G01880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01880.1 ID=NO16G01880.1|Name=NO16G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=818bp
AACAGGACAGGCTGGGAAATTTGCTTCCTCAAAATTGCGCCATCTTTTTC
CTCCCCCTCCTTCATCGTCGCTCATGTGGCCCCCTAGCAGCAGCAGCAGT
CCTAGTACCGCGGCCCTGACCGTCCTCCTCCTCCTCCCCGTCATGCTCCT
GTCCTTCCAATGTTCCACGCACGCGTTTAACGTCCTTTCGATCAGCCAGC
AGTCACCGCCTCTCCGAGAGAGGACATTGCAAACCTACCCGCAGCAAAAC
GATGATCTGGACGGAAGCAGCAGAAGCAGTAGCAGCAGCACGAACCAGCA
CCTTGGGCAGCTTGGCCGCGTCTCTCCACGGACGCGCACGTTGGAGAATA
TTCGATGTCCCCAGTGTCTCTCTGTGGACGACGAGGTCTTTCTCGTTTCC
TCTCCTTCAGTACCATCACCAAAAGGGGACAGTAGTAGTACGTGGATATA
CCGTGAAGGCGGGGAGGAGAGAGGCAGGGAGGTATGGCGACCATCACCAG
GCACCATTCCACCGCACATATCGATAAGTGAGTTTACCTGGCGGCTTTAC
AGCGACAAGCCTTGGGTGAATGAGGGGATGGGAGAGCGAAAGAGTGAAGG
AGGGCAGAGAACGAAGTAATTGGGTCGCTGCTTTGTAGAGTAATCAATTG
TTAGGTAAATGTGTGTCTTTGTTGTACCTCAGGTGGCTGTAAAGATAAGA
AAGGAAGAGGAGAAGGAGTGGATAGAGGACGTAAAATGACGTGAGAACAG
GAGAGATGCCATGTCACACAAATGTGTGTTAGACCACGACGATTAATTTA
ACTACCATCAAGCAGTAC
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protein sequence of NO16G01880.1

>NO16G01880.1-protein ID=NO16G01880.1-protein|Name=NO16G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MWPPSSSSSPSTAALTVLLLLPVMLLSFQCSTHAFNVLSISQQSPPLRER
TLQTYPQQNDDLDGSSRSSSSSTNQHLGQLGRVSPRTRTLENIRCPQCLS
VDDEVFLVSSPSVPSPKGDSSSTWIYREGGEERGREVWRPSPGTIPPHIS
ISEFTWRLYSDKPWVNEGMGERKSEGGQRTK*
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mRNA from alignment at chr16:548635..549452+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01880.1 ID=NO16G01880.1|Name=NO16G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=818bp|location=Sequence derived from alignment at chr16:548635..549452+ (Nannochloropsis oceanica)
AACAGGACAGGCTGGGAAATTTGCTTCCTCAAAATTGCGCCATCTTTTTC
CTCCCCCTCCTTCATCGTCGCTCATGTGGCCCCCTAGCAGCAGCAGCAGT
CCTAGTACCGCGGCCCTGACCGTCCTCCTCCTCCTCCCCGTCATGCTCCT
GTCCTTCCAATGTTCCACGCACGCGTTTAACGTCCTTTCGATCAGCCAGC
AGTCACCGCCTCTCCGAGAGAGGACATTGCAAACCTACCCGCAGCAAAAC
GATGATCTGGACGGAAGCAGCAGAAGCAGTAGCAGCAGCACGAACCAGCA
CCTTGGGCAGCTTGGCCGCGTCTCTCCACGGACGCGCACGTTGGAGAATA
TTCGATGTCCCCAGTGTCTCTCTGTGGACGACGAGGTCTTTCTCGTTTCC
TCTCCTTCAGTACCATCACCAAAAGGGGACAGTAGTAGTACGTGGATATA
CCGTGAAGGCGGGGAGGAGAGAGGCAGGGAGGTATGGCGACCATCACCAG
GCACCATTCCACCGCACATATCGATAAGTGAGTTTACCTGGCGGCTTTAC
AGCGACAAGCCTTGGGTGAATGAGGGGATGGGAGAGCGAAAGAGTGAAGG
AGGGCAGAGAACGAAGTAATTGGGTCGCTGCTTTGTAGAGTAATCAATTG
TTAGGTAAATGTGTGTCTTTGTTGTACCTCAGGTGGCTGTAAAGATAAGA
AAGGAAGAGGAGAAGGAGTGGATAGAGGACGTAAAATGACGTGAGAACAG
GAGAGATGCCATGTCACACAAATGTGTGTTAGACCACGACGATTAATTTA
ACTACCATCAAGCAGTAC
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Coding sequence (CDS) from alignment at chr16:548635..549452+

>NO16G01880.1 ID=NO16G01880.1|Name=NO16G01880.1|organism=Nannochloropsis oceanica|type=CDS|length=546bp|location=Sequence derived from alignment at chr16:548635..549452+ (Nannochloropsis oceanica)
ATGTGGCCCCCTAGCAGCAGCAGCAGTCCTAGTACCGCGGCCCTGACCGT
CCTCCTCCTCCTCCCCGTCATGCTCCTGTCCTTCCAATGTTCCACGCACG
CGTTTAACGTCCTTTCGATCAGCCAGCAGTCACCGCCTCTCCGAGAGAGG
ACATTGCAAACCTACCCGCAGCAAAACGATGATCTGGACGGAAGCAGCAG
AAGCAGTAGCAGCAGCACGAACCAGCACCTTGGGCAGCTTGGCCGCGTCT
CTCCACGGACGCGCACGTTGGAGAATATTCGATGTCCCCAGTGTCTCTCT
GTGGACGACGAGGTCTTTCTCGTTTCCTCTCCTTCAGTACCATCACCAAA
AGGGGACAGTAGTAGTACGTGGATATACCGTGAAGGCGGGGAGGAGAGAG
GCAGGGAGGTATGGCGACCATCACCAGGCACCATTCCACCGCACATATCG
ATAAGTGAGTTTACCTGGCGGCTTTACAGCGACAAGCCTTGGGTGAATGA
GGGGATGGGAGAGCGAAAGAGTGAAGGAGGGCAGAGAACGAAGTAA
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Synonyms
Publications