NO16G01860.1, NO16G01860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01860.1
Unique NameNO16G01860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1781
Alignment locationchr16:544729..546952 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:544729..546952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01860.1 vs.
Match: XP_005855088.1 (protein phosphatase 2c, partial [Nannochloropsis gaditana CCMP526]; EKU21272.1 protein phosphatase 2c, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 343.2 bits (879), Expect = 1.300e-90
Identity = 182/247 (73.68%), Postives = 204/247 (82.59%), Query Frame = 0 
Query:   12 PLSLLSPFLLLALLVSTASINAFSWPR-LGS----KKECVRSFKAVAYSISTYAANSPIEDRHVVVDEQSSSLF-SLASNPLPFFHAAVFDGHGGFEVAEMVKNNLVGKVKETIAKLPAHAQKDETVITNALIHAFILVETDWITGVLALENELQQRKKATIGACALYALVKDNILYVANAGDCRAVMGKLRHPLKDPSAPPSLVPSPVAGSEKVYEAIPMSLDHNAREEREHARLRKAHPGEDEDI 253
            PL LL  F+LL +L     +++FSWP  L S     +ECVRS +AVA+S  +Y AN+PIEDR++VVD+Q  SLF S +S+ LP+FHAAVFDGHGG EVAEMV+N LVGKVKETIAKLP HAQKDETVITNALI+AFI VET WI  VLALENEL QRKKAT+GACALY L+KDN+LYVANAGDCRAVMGKLRHP K  SAPPSL+PSP   S  VYEAIPMSLDHNAREEREHARLRKAHPGEDEDI
Sbjct:   32 PLPLLLLFILL-ILSHNHPVDSFSWPNPLASFSQKNRECVRSVRAVAFSTCSYPANNPIEDRYIVVDDQIPSLFASASSSSLPYFHAAVFDGHGGAEVAEMVRNTLVGKVKETIAKLPRHAQKDETVITNALINAFIQVETLWIESVLALENELTQRKKATVGACALYTLIKDNVLYVANAGDCRAVMGKLRHPAKPASAPPSLIPSPHPSSTAVYEAIPMSLDHNAREEREHARLRKAHPGEDEDI 277
The following BLAST results are available for this feature:
BLAST of NO16G01860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855088.11.300e-9073.68protein phosphatase 2c, partial [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01860NO16G01860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01860.1NO16G01860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01860.1.cds1NO16G01860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01860.1.cds2NO16G01860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01860.1.cds3NO16G01860.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01860.1 ID=NO16G01860.1|Name=NO16G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1781bp
GAGCCGGCAGAGCTATGAGTGCCTTCATGTAATCACCAGAGCACATCATG
TGCACGTACAAGACTATCACGCCATATACCTATGCCCTAACCTGTTCACA
GCACTAACGACCCTGAAAGACGAGCCAGAGGAAGGGGCAGGGTAGCACTA
ATGCGGGCTTCACGATGCCACCTCCCTTTTTGTCCCCTCTCCCTCCTCTC
GCCCTTCCTTCTCCTTGCCCTTTTGGTCAGCACCGCCAGCATCAATGCCT
TCTCCTGGCCCAGGCTTGGCAGCAAAAAGGAATGCGTCCGTTCCTTCAAA
GCAGTCGCGTACTCCATAAGCACGTACGCTGCCAACAGTCCTATTGAAGA
CCGGCACGTTGTGGTTGATGAACAATCGTCCTCTCTATTTTCATTGGCTT
CCAATCCCCTCCCCTTCTTTCATGCCGCAGTGTTTGATGGTCATGGAGGG
TTTGAGGTGGCGGAGATGGTGAAGAATAATTTGGTGGGGAAAGTAAAGGA
GACGATTGCGAAGCTTCCGGCGCACGCACAGAAGGATGAAACTGTGATTA
CAAACGCCCTCATCCACGCCTTCATCCTGGTCGAAACCGATTGGATCACC
GGCGTCTTGGCCCTGGAAAATGAGCTCCAACAACGAAAGAAAGCCACCAT
TGGCGCCTGTGCCCTCTACGCGTTGGTGAAGGACAACATCCTATACGTTG
CGAACGCGGGTGACTGCCGTGCAGTCATGGGCAAACTTCGCCACCCCTTA
AAGGACCCCTCCGCCCCTCCTTCCCTCGTGCCCTCCCCCGTGGCTGGCTC
GGAAAAGGTGTATGAAGCGATTCCCATGAGCTTGGATCACAACGCGAGGG
AGGAGAGGGAGCATGCGCGATTGAGAAAGGCCCACCCCGGGGAGGATGAG
GATATTGTGTTATGCTACCACGGGGGGCAGGCGTGCTATGTGAAGGGGAG
GTTACAACCGTCTCGGGCGTTTGGCGACATACATTTGAAGCTGGAAGACT
TTGGTCCTGAAGACGAAGACCTGCCATGGACGCCGCCTTACGTCTCGGCG
ATCCCTGAAGTTGCTTCTGTTGCATTAAACAGGCTAGATCAATTCCTCGT
TCTGGGATCTGACGGGCTGTGGGAAGTGTTCGAGAACGAGGAGGTAGTGA
GCATGGTCGCTGGGTGGAGGGAGGAAGGGAGGGAGGAAGGGCGGATCGCG
TCCCTGATAGTCGACGCGGCCTTGGTGAGGATCGCGGAGGGTTTAAAAAT
GAGCGTGGAGGAGCTGAAAGAGGTGAAGGAGGGGAGGGAGAGGAGGAGGA
AACATGACGATATAACGGTGGTGGTGTTGTTCTTGGGAGAGGAGAGGGAG
GGGGACTGTCCGCTGGAGGGGTCGGAGGCTTGGGAGGAGGAGTTGGGCGC
CGAAGTGGACGACTTTATCTACCCGGAAGAGGAGGAGGAGGAGGGAGGGA
GGGGGGAAGTAGGGAGGGAGGGAGGGGGCGAGGAGAGGCCGGATTTGTTT
GGAGCCGGGAAGGAGAGGAAACATGAGTTGTAGGGAGGGAGGGAGGGAGG
GGGGGAGGGCGACGAAAGGTGTGTGTAAGCGATAACACGGGAAAAGGAGG
GGGAAATCCGACGGTCGCGCTCAGTTTCATGATCAGCAGCAGCGGCAACG
CGCAGTAGTAATAGTTGTGACAACCAACATTAGTATAATTGAATTAAGAT
CCCAAACTCTTCCGAAAAGTTGTTATTCACAAAATAAAAGGACGTGAAAA
ATGAAAAACAAGAAGAATCAAAGCAACCAGT
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protein sequence of NO16G01860.1

>NO16G01860.1-protein ID=NO16G01860.1-protein|Name=NO16G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MRASRCHLPFCPLSLLSPFLLLALLVSTASINAFSWPRLGSKKECVRSFK
AVAYSISTYAANSPIEDRHVVVDEQSSSLFSLASNPLPFFHAAVFDGHGG
FEVAEMVKNNLVGKVKETIAKLPAHAQKDETVITNALIHAFILVETDWIT
GVLALENELQQRKKATIGACALYALVKDNILYVANAGDCRAVMGKLRHPL
KDPSAPPSLVPSPVAGSEKVYEAIPMSLDHNAREEREHARLRKAHPGEDE
DIVLCYHGGQACYVKGRLQPSRAFGDIHLKLEDFGPEDEDLPWTPPYVSA
IPEVASVALNRLDQFLVLGSDGLWEVFENEEVVSMVAGWREEGREEGRIA
SLIVDAALVRIAEGLKMSVEELKEVKEGRERRRKHDDITVVVLFLGEERE
GDCPLEGSEAWEEELGAEVDDFIYPEEEEEEGGRGEVGREGGGEERPDLF
GAGKERKHEL*
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mRNA from alignment at chr16:544729..546952+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01860.1 ID=NO16G01860.1|Name=NO16G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2224bp|location=Sequence derived from alignment at chr16:544729..546952+ (Nannochloropsis oceanica)
GAGCCGGCAGAGCTATGAGTGCCTTCATGTAATCACCAGAGCACATCATG
TGCACGTACAAGACTATCACGCCATATACCTATGCCCTAACCTGTTCACA
GCACTAACGACCCTGAAAGACGAGCCAGAGGAAGGGGCAGGGTAGCACTA
ATGCGGGCTTCACGATGCCACCTCCCTTTTTGTCCCCTCTCCCTCCTCTC
GCCCTTCCTTCTCCTTGCCCTTTTGGTCAGCACCGCCAGCATCAATGCCT
TCTCCTGGCCCAGGCTTGGCAGCAAAAAGGAATGCGTCCGTTCCTTCAAA
GCAGTCGCGTACTCCATAAGCACGTACGCTGCCAACAGTCCTATTGAAGA
CCGGCACGTTGTGGTTGATGAACAATCGTCCTCTCTATTTTCATTGGCTT
CCAATCCCCTCCCCTTCTTTCATGCCGCAGTGTTTGATGGTCATGGAGGG
TTTGAGGTGGCGGAGATGGTGAAGAATAATTTGGTGGGGAAAGTAAAGGA
GACGATTGCGAAGCTTCCGGCGCACGCACAGAAGGATGAAACTGTGGTAC
GTAGAAGTAAATAAATTGGGAAAAGATTGAAAGCGAATGCGAGATATGTG
TCTTAAGGATCCTTGGATTTCGCACACAACTTCAGGAAAGGAGTGACAGC
GACGCGACACAACATTTCGCGGTGACTCACCATTTCACTCCCTCCCTCCT
TCCCCTCCTCCCTCCCTTCTCAGATTACAAACGCCCTCATCCACGCCTTC
ATCCTGGTCGAAACCGATTGGATCACCGGCGTCTTGGCCCTGGAAAATGA
GCTCCAACAACGAAAGAAAGCCACCATTGGCGCCTGTGCCCTCTACGCGT
TGGTGAAGGACAACATCCTATACGTTGCGAACGCGGGTGACTGCCGTGCA
GTCATGGGCAAACTTCGCCACCCCTTAAAGGACCCCTCCGCCCCTCCTTC
CCTCGTGCCCTCCCCCGTGGCTGGCTCGGAAAAGGTGTATGAAGCGATTC
CCATGAGCTTGGATCACAACGCGAGGGAGGAGAGGGAGCATGCGCGATTG
AGAAAGGCCCACCCCGGGGAGGATGAGGATATTGTGTTATGCTACCACGG
GGGGCAGGCGTGCTATGTGAAGGGGAGGTTACAACCGTCTCGGGCGTTTG
GCGACATACATTTGAAGCTGGAAGGTGAGGAGGCTGGAAGGGAGGGTGAA
AGGGGGGGTGAAAGGGAGGGAGGGAGAGATGGAGGAAGGGAGGGAGGGAG
GGAGGGAGGGAGGGTCATCCGGGCTTTTGACGACATTCATTTGAAGTCTG
GAGGTAACAAGGGTAGAAGGGAGAGAGGAGGGAAGGAGACGGCAAGACAG
AGGGTCAGTCGTACGGTATTTTTCCTCAAACATGAATTCGGCCTCTCACC
CGTCTTCCTTTCCCCTTCCCTTCCTCCCTCTCTTCCTCAGACTTTGGTCC
TGAAGACGAAGACCTGCCATGGACGCCGCCTTACGTCTCGGCGATCCCTG
AAGTTGCTTCTGTTGCATTAAACAGGCTAGATCAATTCCTCGTTCTGGGA
TCTGACGGGCTGTGGGAAGTGTTCGAGAACGAGGAGGTAGTGAGCATGGT
CGCTGGGTGGAGGGAGGAAGGGAGGGAGGAAGGGCGGATCGCGTCCCTGA
TAGTCGACGCGGCCTTGGTGAGGATCGCGGAGGGTTTAAAAATGAGCGTG
GAGGAGCTGAAAGAGGTGAAGGAGGGGAGGGAGAGGAGGAGGAAACATGA
CGATATAACGGTGGTGGTGTTGTTCTTGGGAGAGGAGAGGGAGGGGGACT
GTCCGCTGGAGGGGTCGGAGGCTTGGGAGGAGGAGTTGGGCGCCGAAGTG
GACGACTTTATCTACCCGGAAGAGGAGGAGGAGGAGGGAGGGAGGGGGGA
AGTAGGGAGGGAGGGAGGGGGCGAGGAGAGGCCGGATTTGTTTGGAGCCG
GGAAGGAGAGGAAACATGAGTTGTAGGGAGGGAGGGAGGGAGGGGGGGAG
GGCGACGAAAGGTGTGTGTAAGCGATAACACGGGAAAAGGAGGGGGAAAT
CCGACGGTCGCGCTCAGTTTCATGATCAGCAGCAGCGGCAACGCGCAGTA
GTAATAGTTGTGACAACCAACATTAGTATAATTGAATTAAGATCCCAAAC
TCTTCCGAAAAGTTGTTATTCACAAAATAAAAGGACGTGAAAAATGAAAA
ACAAGAAGAATCAAAGCAACCAGT
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Coding sequence (CDS) from alignment at chr16:544729..546952+

>NO16G01860.1 ID=NO16G01860.1|Name=NO16G01860.1|organism=Nannochloropsis oceanica|type=CDS|length=1383bp|location=Sequence derived from alignment at chr16:544729..546952+ (Nannochloropsis oceanica)
ATGCGGGCTTCACGATGCCACCTCCCTTTTTGTCCCCTCTCCCTCCTCTC
GCCCTTCCTTCTCCTTGCCCTTTTGGTCAGCACCGCCAGCATCAATGCCT
TCTCCTGGCCCAGGCTTGGCAGCAAAAAGGAATGCGTCCGTTCCTTCAAA
GCAGTCGCGTACTCCATAAGCACGTACGCTGCCAACAGTCCTATTGAAGA
CCGGCACGTTGTGGTTGATGAACAATCGTCCTCTCTATTTTCATTGGCTT
CCAATCCCCTCCCCTTCTTTCATGCCGCAGTGTTTGATGGTCATGGAGGG
TTTGAGGTGGCGGAGATGGTGAAGAATAATTTGGTGGGGAAAGTAAAGGA
GACGATTGCGAAGCTTCCGGCGCACGCACAGAAGGATGAAACTGTGATTA
CAAACGCCCTCATCCACGCCTTCATCCTGGTCGAAACCGATTGGATCACC
GGCGTCTTGGCCCTGGAAAATGAGCTCCAACAACGAAAGAAAGCCACCAT
TGGCGCCTGTGCCCTCTACGCGTTGGTGAAGGACAACATCCTATACGTTG
CGAACGCGGGTGACTGCCGTGCAGTCATGGGCAAACTTCGCCACCCCTTA
AAGGACCCCTCCGCCCCTCCTTCCCTCGTGCCCTCCCCCGTGGCTGGCTC
GGAAAAGGTGTATGAAGCGATTCCCATGAGCTTGGATCACAACGCGAGGG
AGGAGAGGGAGCATGCGCGATTGAGAAAGGCCCACCCCGGGGAGGATGAG
GATATTGTGTTATGCTACCACGGGGGGCAGGCGTGCTATGTGAAGGGGAG
GTTACAACCGTCTCGGGCGTTTGGCGACATACATTTGAAGCTGGAAGACT
TTGGTCCTGAAGACGAAGACCTGCCATGGACGCCGCCTTACGTCTCGGCG
ATCCCTGAAGTTGCTTCTGTTGCATTAAACAGGCTAGATCAATTCCTCGT
TCTGGGATCTGACGGGCTGTGGGAAGTGTTCGAGAACGAGGAGGTAGTGA
GCATGGTCGCTGGGTGGAGGGAGGAAGGGAGGGAGGAAGGGCGGATCGCG
TCCCTGATAGTCGACGCGGCCTTGGTGAGGATCGCGGAGGGTTTAAAAAT
GAGCGTGGAGGAGCTGAAAGAGGTGAAGGAGGGGAGGGAGAGGAGGAGGA
AACATGACGATATAACGGTGGTGGTGTTGTTCTTGGGAGAGGAGAGGGAG
GGGGACTGTCCGCTGGAGGGGTCGGAGGCTTGGGAGGAGGAGTTGGGCGC
CGAAGTGGACGACTTTATCTACCCGGAAGAGGAGGAGGAGGAGGGAGGGA
GGGGGGAAGTAGGGAGGGAGGGAGGGGGCGAGGAGAGGCCGGATTTGTTT
GGAGCCGGGAAGGAGAGGAAACATGAGTTGTAG
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Synonyms
Publications