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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr16 | genome | chr16:533628..536608 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO16G01820.1 vs.
Match: EWM23978.1 (amino acid-polyamine-organocation family [Nannochloropsis gaditana]) HSP 1 Score: 763.8 bits (1971), Expect = 4.400e-217 Identity = 404/656 (61.59%), Postives = 486/656 (74.09%), Query Frame = 0
Query: 3 VTPAGSTSTSPKNPAQEE--SLTF------SSSPRKRVTS---RSGVDTPAVQSLPSS-DSACPAAVGLRRRGNSSSHEHDAGGSSRGRWAWHSPFLRKPMSVVEGEEEEEKLERRMGLYDLLAVGIGGTVGSGVFVLAGEIANAPDLPAGPSVVLSFAAAGLGCVLSGLSFAELASRIHADGSSYIYAYVNLGEVFAFVAGCCLTLEYGISSAAVARNWGDKLGAWVDHMHPHDASEGSVWHPGSGDATGFFRDFNIYAGAIELVCMCIILRGMNVSKITVNVITIAKLLLVVFMTITGFSFLRPSNLEPFAPSGFRGIFRGGTRCFFGYLGFDEVCCMGGEAKNPSKSIPLAVMGTISVVTVLYILASLALVGMQPFADITPSSGFAEAFRFNNLGWAANTVTAGELLTLPLVVLVSLLAQPRLQYAMAQDGLLPAVFGHVDRNGNLFKGTLIAGTVGVVVALFLPFRALEDVISAGVLIAFNLTNTALVVSRRVHPIRPSANRTLALAFNVLALSACFMWKNLGTILPWLPLNVLVTAAAVVPLVLLHVTCPDH--PSQDGHFTTPLVPWVPALGSAFNWFLLTQLSWEGLGLVLAFLGGSLFLYATYGWRNSKGGKTGWMEVLAASVRRHSRHPSEVDPGLIEGLLGEGEGE 645
V+P G+ + QEE SL F SS+ R R+ S R D Q + + CP +R + E D GGS R WHSPFLRKPM V+ EEE+EKL RR+ LYDLLAVGIGGTVGSGVFVLAGEIANAPDLPAGPSVVLSFAAAG C +SGLSFAELAS IHADGSSY+YAYV+LGE+FAF AGCCLTLEYG+SSAAVARNWGDKLGAWV+H+H +D S+W PG+GD G ++DFNIYAGAI+ +CM I+LRG+NVS++ ++V+T++K++LV+F+TI GF +NL PFAPSGF+GI RGG RCFFGYLGFDEVCC+ GEAK P+K+IP AVMGTI +VT LY +A+LALVGMQ F++I+ SSGFAEAFR NL W AN V GELLTLPLVV VSLLAQPRLQ+AMAQDGLLPA+ G VD+NGNLF GTL+AG V +ALFLPF ALEDVISAGVLIAFN TN+AL+VSRR P NR L FN+ AC +W++ G ++PWLP+++L T A++ +VLL + CPD + + F TP VPW+PA+G+ N+FLL QLS EGLGLV+ +LG SL YA Y + NS+GGK GW A S+RRHSRH +E DP LI GLL E E
Sbjct: 8 VSPQGAAPSPAMGNDQEEAPSLLFPSIVPQSSTSRHRLRSSCDRGSGDVVFRQEIAGIFEEVCPCEGESKR-----TSEQDRGGS-HSRCTWHSPFLRKPMGVITEEEEKEKLARRLSLYDLLAVGIGGTVGSGVFVLAGEIANAPDLPAGPSVVLSFAAAGFACFVSGLSFAELASGIHADGSSYVYAYVHLGEIFAFWAGCCLTLEYGVSSAAVARNWGDKLGAWVNHLHTNDNGTTSIWQPGTGDRVGMWKDFNIYAGAIQFICMTIMLRGLNVSRLAIDVMTLSKMVLVIFITIAGFCVFAQANLAPFAPSGFQGILRGGMRCFFGYLGFDEVCCLAGEAKQPAKNIPRAVMGTIGIVTFLYFVAALALVGMQNFSEISTSSGFAEAFRARNLLWIANVVAVGELLTLPLVVFVSLLAQPRLQFAMAQDGLLPAILGKVDKNGNLFFGTLVAGLTSVAIALFLPFGALEDVISAGVLIAFNFTNSALMVSRRSRSTLPHINRIFVLVFNISTFIACCLWQHTGFVMPWLPVSILSTCVALLSIVLLEIVCPDQIPLASENRFRTPCVPWIPAVGATMNYFLLVQLSIEGLGLVMVYLGISLLFYAMYSFHNSQGGKNGWRGSNAVSLRRHSRHSTETDPQLIAGLLNVDEDE 657
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO16G01820.1 ID=NO16G01820.1|Name=NO16G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2600bp TAAATCCGCCTGTGTCGTGTGCACGTGTACGTGTGACAGTGAGTGGACGC GGAGATGCGAAGGGCAGAGAGAGGCTGCTGTGACTACTGCTGATCATGAA GCATAATGGATTGCCTAGTGTCAGCTTTTCCCAAGTTGAGTAGCTCAAGC TGCTCCTTCACGAGCCATTGATGCCTGTCGCATCTTTTGTTAGTTAAGAT GCCTCAGGGATGTGATGAGGATTTGCGTTCGTACGTGCTTTGCCCGCCCG TCAAAGCGCATCCCCTCGCCAATGAAGTTGCCGTTGGTCCGCAGTGTGCA TGTCCCTCCCTGCCTTTTGTTTTTAACACAGACCGACGATACAAACATAT TTCTCACAGACACATTAAGAGGATAGAAATATGCGCGTCACTCCAGCTGG CTCTACGTCCACCAGCCCAAAAAATCCTGCCCAAGAAGAGTCGCTAACAT TTTCGTCATCGCCGCGGAAACGTGTGACCTCTCGAAGCGGCGTGGACACC CCCGCTGTACAGTCGCTGCCATCTTCTGATTCTGCTTGTCCTGCTGCTGT TGGGCTACGACGGAGAGGCAACAGCAGCAGTCACGAGCACGACGCGGGTG GGAGCAGTCGCGGCAGGTGGGCATGGCACAGTCCCTTTCTACGCAAGCCC ATGAGCGTTGTCGAGGGAGAGGAGGAGGAAGAAAAGCTGGAGAGGCGGAT GGGGCTGTACGATTTGCTCGCAGTCGGCATCGGTGGCACAGTTGGAAGCG GGGTATTTGTCCTAGCAGGGGAGATTGCCAATGCGCCTGACTTGCCTGCA GGACCTTCGGTTGTTCTTTCTTTTGCGGCTGCGGGCTTGGGGTGTGTCCT GAGTGGCCTCTCATTTGCCGAGTTGGCGAGTCGCATTCATGCGGACGGGA GCTCCTACATTTATGCATACGTGAACTTGGGGGAGGTCTTTGCGTTTGTG GCTGGCTGTTGTCTGACCCTAGAATATGGCATCAGCAGTGCTGCCGTGGC GAGAAACTGGGGCGACAAGCTCGGAGCTTGGGTAGATCACATGCATCCAC ACGACGCCAGCGAGGGTTCTGTCTGGCACCCGGGCAGTGGGGATGCAACG GGTTTCTTCCGCGATTTCAATATCTACGCGGGGGCGATTGAGCTGGTGTG TATGTGCATTATTCTTCGAGGGATGAATGTGAGTAAAATCACTGTGAATG TCATAACAATAGCGAAGTTGTTGCTGGTTGTGTTCATGACCATCACCGGC TTTTCGTTTTTAAGGCCGAGTAATCTTGAGCCGTTTGCACCCAGTGGGTT TCGAGGCATTTTCAGAGGAGGGACAAGGTGTTTTTTCGGATATCTGGGCT TTGACGAGGTGTGCTGCATGGGCGGAGAAGCGAAGAATCCGTCAAAAAGC ATACCGTTGGCGGTGATGGGAACCATCTCGGTGGTGACAGTGCTGTACAT CTTGGCGTCGTTGGCCTTGGTGGGGATGCAGCCTTTTGCGGATATTACTC CTTCTTCCGGGTTTGCCGAGGCGTTTCGGTTCAATAACCTGGGTTGGGCC GCGAATACCGTGACGGCTGGAGAGCTACTGACGCTACCACTAGTGGTATT GGTCTCGCTGCTCGCCCAACCCCGCCTTCAATATGCCATGGCCCAAGATG GATTACTCCCCGCTGTCTTCGGTCACGTGGACCGGAACGGAAATCTCTTC AAAGGCACGTTGATCGCGGGAACGGTGGGTGTGGTCGTAGCATTATTTTT GCCATTTCGTGCATTGGAGGACGTGATCAGCGCCGGGGTGCTCATTGCCT TTAACCTCACCAACACTGCCCTGGTTGTCTCCCGTCGAGTCCATCCGATC CGGCCTTCCGCCAATCGTACCTTAGCTCTAGCATTCAACGTCCTCGCATT AAGTGCATGTTTCATGTGGAAAAACCTCGGGACCATTCTCCCCTGGCTAC CGCTTAATGTACTGGTGACCGCCGCGGCAGTGGTACCTCTTGTGTTGCTG CATGTGACTTGCCCAGATCATCCTTCGCAGGACGGACATTTTACTACCCC GCTTGTACCGTGGGTGCCGGCTTTAGGGAGTGCTTTCAACTGGTTTTTGT TGACACAGTTGTCGTGGGAGGGGTTGGGTTTAGTCTTGGCCTTCCTGGGA GGGTCTCTTTTTTTGTATGCAACTTATGGATGGAGGAACTCGAAGGGGGG AAAGACGGGGTGGATGGAGGTGTTGGCGGCCTCGGTACGCAGGCATTCGC GGCATCCAAGTGAGGTGGATCCCGGGTTAATAGAGGGGTTGTTGGGGGAG GGGGAGGGGGAGGGAGGCGAGGAGCGTTTACGTGGGGGTCGAAGGGGTGG TAAGGAGAAAGAGGGAGATGGGGGGCAGGAGGGACAGAGGCAAGCCGTAC AAGAGGTGCAACCTGATCTGCGGAAAGCGGGCGATATGATTTCTACTTGA GGTATGAGTGCATAACCCCCTCTCCTAGCTGAGCGTGTTTGGTGTGTGTA TATATGTATGTATAGATAATATGTAATCAGGGTGTCGTGTCTTAAGATAC GGGGCAGGTAACGAGAGACCGAAAAGAAAGCACACTTTGTTAGATCTGGA back to topprotein sequence of NO16G01820.1 >NO16G01820.1-protein ID=NO16G01820.1-protein|Name=NO16G01820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=690bp MRVTPAGSTSTSPKNPAQEESLTFSSSPRKRVTSRSGVDTPAVQSLPSSD SACPAAVGLRRRGNSSSHEHDAGGSSRGRWAWHSPFLRKPMSVVEGEEEE EKLERRMGLYDLLAVGIGGTVGSGVFVLAGEIANAPDLPAGPSVVLSFAA AGLGCVLSGLSFAELASRIHADGSSYIYAYVNLGEVFAFVAGCCLTLEYG ISSAAVARNWGDKLGAWVDHMHPHDASEGSVWHPGSGDATGFFRDFNIYA GAIELVCMCIILRGMNVSKITVNVITIAKLLLVVFMTITGFSFLRPSNLE PFAPSGFRGIFRGGTRCFFGYLGFDEVCCMGGEAKNPSKSIPLAVMGTIS VVTVLYILASLALVGMQPFADITPSSGFAEAFRFNNLGWAANTVTAGELL TLPLVVLVSLLAQPRLQYAMAQDGLLPAVFGHVDRNGNLFKGTLIAGTVG VVVALFLPFRALEDVISAGVLIAFNLTNTALVVSRRVHPIRPSANRTLAL AFNVLALSACFMWKNLGTILPWLPLNVLVTAAAVVPLVLLHVTCPDHPSQ DGHFTTPLVPWVPALGSAFNWFLLTQLSWEGLGLVLAFLGGSLFLYATYG WRNSKGGKTGWMEVLAASVRRHSRHPSEVDPGLIEGLLGEGEGEGGEERL RGGRRGGKEKEGDGGQEGQRQAVQEVQPDLRKAGDMIST* back to topmRNA from alignment at chr16:533628..536608- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO16G01820.1 ID=NO16G01820.1|Name=NO16G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2981bp|location=Sequence derived from alignment at chr16:533628..536608- (Nannochloropsis oceanica) TAAATCCGCCTGTGTCGTGTGCACGTGTACGTGTGACAGTGAGTGGACGC
GGAGATGCGAAGGGCAGAGAGAGGCTGCTGTGACTACTGCTGATCATGAA
GCATAATGGATTGCCTAGTGTCAGCTTTTCCCAAGTTGAGTAGCTCAAGC
TGCTCCTTCACGAGCCATTGATGCCTGTCGCATCTTTTGTTAGTTAAGAT
GCCTCAGGGATGTGATGAGGATTTGCGTTCGTACGTGCTTTGCCCGCCCG
TCAAAGCGCATCCCCTCGCCAATGAAGTTGCCGTTGGTCCGCAGTGTGCA
TGTCCCTCCCTGCCTTTTGTTTTTAACACAGACCGACGATACAAACATAT
TTCTCACAGACACATTAAGAGGATAGAAATATGCGCGTCACTCCAGCTGG
CTCTACGTCCACCAGCCCAAAAAATCCTGCCCAAGAAGAGTCGCTAACAT
TTTCGTCATCGCCGCGGAAACGTGTGACCTCTCGAAGCGGCGTGGACACC
CCCGCTGTACAGTCGCTGCCATCTTCTGATTCTGCTTGTCCTGCTGCTGT
TGGGCTACGACGGAGAGGCAACAGCAGCAGTCACGAGCACGACGCGGGTG
GGAGCAGTCGCGGCAGGTGGGCATGGCACAGTCCCTTTCTACGCAAGCCC
ATGAGCGTTGTCGAGGGAGTAAGTGAATATGGATGGCACGAGGAGGTGGT
TTTAGGCTATGGCAATACTGACTCATCAGTACCCTTAACGTTCTCCTCAC
ATCCCCCAACTCATCCATTTGCCCTCTCGTTCAGGAGGAGGAGGAAGAAA
AGCTGGAGAGGCGGATGGGGCTGTACGATTTGCTCGCAGTCGGCATCGGT
GGCACAGTTGGAAGCGGGGTATTTGTCCTAGCAGGGGAGATTGCCAATGC
GCCTGACTTGCCTGCAGGACCTTCGGTTGTTCTTTCTTTTGCGGCTGCGG
GCTTGGGGTGTGTCCTGAGTGGCCTCTCATTTGCCGAGTTGGCGAGTCGC
ATTCATGCGGACGGGAGCTCCTACATTTATGCATACGTGAACTTGGGGGA
GGTCTTTGCGTTTGTGGCTGGCTGGTAAGGCGGGAGAATGGAGAAGGCAG
CATCATTACATGTAAATGGGGCACCGTATGTGTCGTCAATCTTGCTTCTC
TACCCACTTCTTGCCCGCCCATCACACATATGTACTCATATACACATACA
CACACATGAATACACACACATACACATACATGCATGTATACTCTCTCTCT
CACACACACAGAGACATGTGTATATATATACATATATATACACATATATA
CACATATACCTGTTCCCATAAACATACATATGACCACAGTTGTCTGACCC
TAGAATATGGCATCAGCAGTGCTGCCGTGGCGAGAAACTGGGGCGACAAG
CTCGGAGCTTGGGTAGATCACATGCATCCACACGACGCCAGCGAGGGTTC
TGTCTGGCACCCGGGCAGTGGGGATGCAACGGGTTTCTTCCGCGATTTCA
ATATCTACGCGGGGGCGATTGAGCTGGTGTGTATGTGCATTATTCTTCGA
GGGATGAATGTGAGTAAAATCACTGTGAATGTCATAACAATAGCGAAGTT
GTTGCTGGTTGTGTTCATGACCATCACCGGCTTTTCGTTTTTAAGGCCGA
GTAATCTTGAGCCGTTTGCACCCAGTGGGTTTCGAGGCATTTTCAGAGGA
GGGACAAGGTGTTTTTTCGGATATCTGGGCTTTGACGAGGTGTGCTGCAT
GGGCGGAGAAGCGAAGAATCCGTCAAAAAGCATACCGTTGGCGGTGATGG
GAACCATCTCGGTGGTGACAGTGCTGTACATCTTGGCGTCGTTGGCCTTG
GTGGGGATGCAGCCTTTTGCGGATATTACTCCTTCTTCCGGGTTTGCCGA
GGCGTTTCGGTTCAATAACCTGGGTTGGGCCGCGAATACCGTGACGGCTG
GAGAGCTACTGACGCTACCACTAGTGGTATTGGTCTCGCTGCTCGCCCAA
CCCCGCCTTCAATATGCCATGGCCCAAGATGGATTACTCCCCGCTGTCTT
CGGTCACGTGGACCGGAACGGAAATCTCTTCAAAGGCACGTTGATCGCGG
GAACGGTGGGTGTGGTCGTAGCATTATTTTTGCCATTTCGTGCATTGGAG
GACGTGATCAGCGCCGGGGTGCTCATTGCCTTTAACCTCACCAACACTGC
CCTGGTTGTCTCCCGTCGAGTCCATCCGATCCGGCCTTCCGCCAATCGTA
CCTTAGCTCTAGCATTCAACGTCCTCGCATTAAGTGCATGTTTCATGTGG
AAAAACCTCGGGACCATTCTCCCCTGGCTACCGCTTAATGTACTGGTGAC
CGCCGCGGCAGTGGTACCTCTTGTGTTGCTGCATGTGACTTGCCCAGATC
ATCCTTCGCAGGACGGACATTTTACTACCCCGCTTGTACCGTGGGTGCCG
GCTTTAGGGAGTGCTTTCAACTGGTTTTTGTTGACACAGTTGTCGTGGGA
GGGGTTGGGTTTAGTCTTGGCCTTCCTGGGAGGGTCTCTTTTTTTGTATG
CAACTTATGGATGGAGGAACTCGAAGGGGGGAAAGACGGGGTGGATGGAG
GTGTTGGCGGCCTCGGTACGCAGGCATTCGCGGCATCCAAGTGAGGTGGA
TCCCGGGTTAATAGAGGGGTTGTTGGGGGAGGGGGAGGGGGAGGGAGGCG
AGGAGCGTTTACGTGGGGGTCGAAGGGGTGGTAAGGAGAAAGAGGGAGAT
GGGGGGCAGGAGGGACAGAGGCAAGCCGTACAAGAGGTGCAACCTGATCT
GCGGAAAGCGGGCGATATGATTTCTACTTGAGGTATGAGTGCATAACCCC
CTCTCCTAGCTGAGCGTGTTTGGTGTGTGTATATATGTATGTATAGATAA
TATGTAATCAGGGTGTCGTGTCTTAAGATACGGGGCAGGTAACGAGAGAC
CGAAAAGAAAGCACACTTTGTTAGATCTGGA back to topCoding sequence (CDS) from alignment at chr16:533628..536608- >NO16G01820.1 ID=NO16G01820.1|Name=NO16G01820.1|organism=Nannochloropsis oceanica|type=CDS|length=2070bp|location=Sequence derived from alignment at chr16:533628..536608- (Nannochloropsis oceanica) ATGCGCGTCACTCCAGCTGGCTCTACGTCCACCAGCCCAAAAAATCCTGC CCAAGAAGAGTCGCTAACATTTTCGTCATCGCCGCGGAAACGTGTGACCT CTCGAAGCGGCGTGGACACCCCCGCTGTACAGTCGCTGCCATCTTCTGAT TCTGCTTGTCCTGCTGCTGTTGGGCTACGACGGAGAGGCAACAGCAGCAG TCACGAGCACGACGCGGGTGGGAGCAGTCGCGGCAGGTGGGCATGGCACA GTCCCTTTCTACGCAAGCCCATGAGCGTTGTCGAGGGAGAGGAGGAGGAA GAAAAGCTGGAGAGGCGGATGGGGCTGTACGATTTGCTCGCAGTCGGCAT CGGTGGCACAGTTGGAAGCGGGGTATTTGTCCTAGCAGGGGAGATTGCCA ATGCGCCTGACTTGCCTGCAGGACCTTCGGTTGTTCTTTCTTTTGCGGCT GCGGGCTTGGGGTGTGTCCTGAGTGGCCTCTCATTTGCCGAGTTGGCGAG TCGCATTCATGCGGACGGGAGCTCCTACATTTATGCATACGTGAACTTGG GGGAGGTCTTTGCGTTTGTGGCTGGCTGTTGTCTGACCCTAGAATATGGC ATCAGCAGTGCTGCCGTGGCGAGAAACTGGGGCGACAAGCTCGGAGCTTG GGTAGATCACATGCATCCACACGACGCCAGCGAGGGTTCTGTCTGGCACC CGGGCAGTGGGGATGCAACGGGTTTCTTCCGCGATTTCAATATCTACGCG GGGGCGATTGAGCTGGTGTGTATGTGCATTATTCTTCGAGGGATGAATGT GAGTAAAATCACTGTGAATGTCATAACAATAGCGAAGTTGTTGCTGGTTG TGTTCATGACCATCACCGGCTTTTCGTTTTTAAGGCCGAGTAATCTTGAG CCGTTTGCACCCAGTGGGTTTCGAGGCATTTTCAGAGGAGGGACAAGGTG TTTTTTCGGATATCTGGGCTTTGACGAGGTGTGCTGCATGGGCGGAGAAG CGAAGAATCCGTCAAAAAGCATACCGTTGGCGGTGATGGGAACCATCTCG GTGGTGACAGTGCTGTACATCTTGGCGTCGTTGGCCTTGGTGGGGATGCA GCCTTTTGCGGATATTACTCCTTCTTCCGGGTTTGCCGAGGCGTTTCGGT TCAATAACCTGGGTTGGGCCGCGAATACCGTGACGGCTGGAGAGCTACTG ACGCTACCACTAGTGGTATTGGTCTCGCTGCTCGCCCAACCCCGCCTTCA ATATGCCATGGCCCAAGATGGATTACTCCCCGCTGTCTTCGGTCACGTGG ACCGGAACGGAAATCTCTTCAAAGGCACGTTGATCGCGGGAACGGTGGGT GTGGTCGTAGCATTATTTTTGCCATTTCGTGCATTGGAGGACGTGATCAG CGCCGGGGTGCTCATTGCCTTTAACCTCACCAACACTGCCCTGGTTGTCT CCCGTCGAGTCCATCCGATCCGGCCTTCCGCCAATCGTACCTTAGCTCTA GCATTCAACGTCCTCGCATTAAGTGCATGTTTCATGTGGAAAAACCTCGG GACCATTCTCCCCTGGCTACCGCTTAATGTACTGGTGACCGCCGCGGCAG TGGTACCTCTTGTGTTGCTGCATGTGACTTGCCCAGATCATCCTTCGCAG GACGGACATTTTACTACCCCGCTTGTACCGTGGGTGCCGGCTTTAGGGAG TGCTTTCAACTGGTTTTTGTTGACACAGTTGTCGTGGGAGGGGTTGGGTT TAGTCTTGGCCTTCCTGGGAGGGTCTCTTTTTTTGTATGCAACTTATGGA TGGAGGAACTCGAAGGGGGGAAAGACGGGGTGGATGGAGGTGTTGGCGGC CTCGGTACGCAGGCATTCGCGGCATCCAAGTGAGGTGGATCCCGGGTTAA TAGAGGGGTTGTTGGGGGAGGGGGAGGGGGAGGGAGGCGAGGAGCGTTTA CGTGGGGGTCGAAGGGGTGGTAAGGAGAAAGAGGGAGATGGGGGGCAGGA GGGACAGAGGCAAGCCGTACAAGAGGTGCAACCTGATCTGCGGAAAGCGG GCGATATGATTTCTACTTGA back to top
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