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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr16 | genome | chr16:526065..528067 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO16G01780.1 vs.
Match: WP_103343228.1 (alpha/beta hydrolase [Amycolatopsis sp. CA-126428]) HSP 1 Score: 78.2 bits (191), Expect = 6.800e-11 Identity = 62/183 (33.88%), Postives = 88/183 (48.09%), Query Frame = 0
Query: 210 HLIGHSMGGAIAVGYADCYPEDVASLTLLTPAGLMDKD-VFYLLRALPWFVQSIVQHCLRRGVLNGIRNDFVRHGTEVENRAVAHARAMHERNPHAFPAIFRSILAFPFAGLENTIRRLSGARLPTLLVWAEYDRVLPFEPQFGRWKALLKTGQNVRYEVVKEAGHGFLLEKPEVVGEMVVGF 392
H++G SMG +A+ YA+ YPE VA+LT++ PAGL ++ LLR V IV R +L G VR ++ VA R + R + A FR++ FP E RR LP LL+W + D+V P G ALL Q V+ GH E+P+ G+++ F
Sbjct: 114 HVVGTSMGALVAMAYANRYPEAVATLTVVGPAGLGERPRPQRLLR--NDVVAGIVARRFGRKLLEGHLGHNVR-DPDLSAELVAMVRDAY-RYEGSLYAFFRTLQDFPLYAREELFRRTGTLGLPVLLLWGDDDQVTPI-THLGTVTALLHPRQT---HVLTACGHMAPYERPDDAGDLLASF 288
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO16G01780.1 ID=NO16G01780.1|Name=NO16G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1876bp
CCACAGGCTTTGCGAAGGGCGGGAGTCGGAAGACGTTTACCCGACGCCTC
CCTGTGCTCGTCGCAGTCGATCGATCATCCAGTCCCAGACATCAGAGTAC
GGCCCACACGCTCCACACAACCGCTGCCTCAGCCTCCATGGCGCCCCAAC
AAAAAGCCAATTTTTCCTGCACTAGCGCTTCCACTTCCATTGAGGACATG
GGTACCAGCACTAATAAACTAACGCCCTTCTCCAAGGCTCCAACGGCCGC
CTCGACCACGCATGCATACACAGCGAGCAGAGCAGCGGTTGCCGCTGCGG
CACTCTCCCCACCCTTGCCAGCGGATGAAGAAGATGGGCAGAAAGGCGAA
ATACTGGCTGGCACTCACTTCATCCTGGAAGGCCCCGCCTCCGGGAAGCT
GGTTGTGTGTGTCCCGGGTTTGGGTGGGCCTCACTGGTACTTTGACGAGG
TTGCCCCCTTCTTGCTTCAAGCAGGTTTCAGGGTTTTGCGGTACGACTTG
GTGGGCCGTGGGCATTCGAAGCCACCATCACGCACTCGTCGGCCGTCGTG
CTTTTGTAATGGCGTGGCCCGGGAGAAAGATCCATATGGCATGGTTGGTC
ATGTCGCCCAACTTCGTCGCCTACTGGTAAACCTCGATCTCGTTGCCAAA
AACAACGGCGACGATCGAATTTCTTCCTCAGCCTGCCCCCAGCCTGACTG
TGATGATACCGACCTGAGCGAGATCGACGATGAAATTCTCTCCCCCTTGC
CCATGTCTGCGATTCACTTGATCGGCCATAGCATGGGAGGGGCCATTGCC
GTTGGGTACGCCGATTGCTATCCTGAAGATGTGGCCTCCCTCACCTTGCT
CACTCCCGCCGGCTTGATGGACAAAGATGTATTTTATCTTTTACGGGCCT
TGCCTTGGTTCGTGCAATCGATAGTCCAGCACTGTCTCCGTCGGGGCGTG
CTCAATGGCATTCGGAACGACTTCGTGCGACATGGGACGGAGGTAGAGAA
TAGAGCGGTGGCTCATGCGCGGGCCATGCATGAGCGGAATCCGCATGCTT
TTCCTGCCATTTTCCGGAGTATTTTGGCTTTTCCCTTTGCGGGGCTGGAG
AATACGATTCGGAGATTGTCCGGTGCGAGGTTACCTACGTTGTTGGTATG
GGCGGAGTATGATAGGGTGTTGCCGTTTGAACCGCAGTTTGGCCGATGGA
AGGCCTTGTTGAAAACGGGGCAGAACGTGAGGTATGAGGTGGTGAAGGAG
GCCGGACACGGCTTTTTACTGGAGAAGCCTGAAGTAGTAGGGGAGATGGT
AGTGGGATTTTTGAAATCTCTCCCTACTTGGGTGCCGGAGGCGTTGATAA
ATCATTTGAAAAGTCATCCTTCCACGATCACCATTTGAGCGAGGAAGAAA
TGAGAGGGAGGCGACGTATGTGTATAAGTGTGTGGGAGCGGTAATAAGGT
GTTTTATTTTTGATTGAATATTTAAGAGGGTGAGACGGAAATGCAATTTC
CAAAGTCGTCTTCTTGCTGGGTGCCGGTGGCGGTGAGTAATCGTCCGCCC
TCCATCACATATCAACCGAAGGAGGGGTAAAAGGAGGATAGATCCGTAGG
GCTAATTGGTGGCAGAAGGAGATGAGATGGTTGCTGTTTTCAACAATGGC
AGTAGGAAATAAATAGCAGCTAGGGAAGGAGGATGTATGATGCTCGTGAT
AAGCTACTTATTTCTGTTTTATGTGCATTTTATATTTTGCCATAAGAGAC
CCTTGTCATATAGAATTTTACAGGCCCGACAAATTTCTCTGGAGAATGTG
TGGCCTAGGGATGCACCCACCCACTCGTAAACACAGTGCGAACTCAAAAG
ATCAAAAGCAATAAATGAGCAGCGAA back to topprotein sequence of NO16G01780.1 >NO16G01780.1-protein ID=NO16G01780.1-protein|Name=NO16G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MAPQQKANFSCTSASTSIEDMGTSTNKLTPFSKAPTAASTTHAYTASRAA
VAAAALSPPLPADEEDGQKGEILAGTHFILEGPASGKLVVCVPGLGGPHW
YFDEVAPFLLQAGFRVLRYDLVGRGHSKPPSRTRRPSCFCNGVAREKDPY
GMVGHVAQLRRLLVNLDLVAKNNGDDRISSSACPQPDCDDTDLSEIDDEI
LSPLPMSAIHLIGHSMGGAIAVGYADCYPEDVASLTLLTPAGLMDKDVFY
LLRALPWFVQSIVQHCLRRGVLNGIRNDFVRHGTEVENRAVAHARAMHER
NPHAFPAIFRSILAFPFAGLENTIRRLSGARLPTLLVWAEYDRVLPFEPQ
FGRWKALLKTGQNVRYEVVKEAGHGFLLEKPEVVGEMVVGFLKSLPTWVP
EALINHLKSHPSTITI* back to topmRNA from alignment at chr16:526065..528067- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO16G01780.1 ID=NO16G01780.1|Name=NO16G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2003bp|location=Sequence derived from alignment at chr16:526065..528067- (Nannochloropsis oceanica)
CCACAGGCTTTGCGAAGGGCGGGAGTCGGAAGACGTTTACCCGACGCCTC
CCTGTGCTCGTCGCAGTCGATCGATCATCCAGTCCCAGACATCAGAGTAC
GGCCCACACGCTCCACACAACCGCTGCCTCAGCCTCCATGGCGCCCCAAC
AAAAAGCCAATTTTTCCTGCACTAGCGCTTCCACTTCCATTGAGGACATG
GGTACCAGCACTAATAAACTAACGCCCTTCTCCAAGGCTCCAACGGCCGC
CTCGACCACGCATGCATACACAGCGAGCAGAGCAGCGGTTGCCGCTGCGG
CACTCTCCCCACCCTTGCCAGCGGATGAAGAAGATGGGCAGAAAGGCGAA
ATACTGGCTGGCACTCACTTCATCCTGGAAGGCCCCGCCTCCGGGAAGCT
GGTTGTGTGTGTCCCGGGTTTGGGTGGGCCTCACTGGTACTTTGACGAGG
TTGCCCCCTTCTTGCTTCAAGCAGGTTTCAGGGTTTTGCGGTACGACTTG
GTGGGCCGTGGGCATTCGAAGCCACCATCACGCACTCGTCGGCCGTCGTG
CTTTTGTAATGGCGTGGCCCGGGAGAAAGATCCATATGGTAGGTTCAGTT
GTCGCCTCCGTTGAGGAGAAGAGATTGTTTGCTGCGGGTATTTATTTTAA
CGATTTCCTTCCTTTTTCTGCATCGTTTCCTCTTCTCCACCCTACTCCCA
CCAATTTTAATCCAGGCATGGTTGGTCATGTCGCCCAACTTCGTCGCCTA
CTGGTAAACCTCGATCTCGTTGCCAAAAACAACGGCGACGATCGAATTTC
TTCCTCAGCCTGCCCCCAGCCTGACTGTGATGATACCGACCTGAGCGAGA
TCGACGATGAAATTCTCTCCCCCTTGCCCATGTCTGCGATTCACTTGATC
GGCCATAGCATGGGAGGGGCCATTGCCGTTGGGTACGCCGATTGCTATCC
TGAAGATGTGGCCTCCCTCACCTTGCTCACTCCCGCCGGCTTGATGGACA
AAGATGTATTTTATCTTTTACGGGCCTTGCCTTGGTTCGTGCAATCGATA
GTCCAGCACTGTCTCCGTCGGGGCGTGCTCAATGGCATTCGGAACGACTT
CGTGCGACATGGGACGGAGGTAGAGAATAGAGCGGTGGCTCATGCGCGGG
CCATGCATGAGCGGAATCCGCATGCTTTTCCTGCCATTTTCCGGAGTATT
TTGGCTTTTCCCTTTGCGGGGCTGGAGAATACGATTCGGAGATTGTCCGG
TGCGAGGTTACCTACGTTGTTGGTATGGGCGGAGTATGATAGGGTGTTGC
CGTTTGAACCGCAGTTTGGCCGATGGAAGGCCTTGTTGAAAACGGGGCAG
AACGTGAGGTATGAGGTGGTGAAGGAGGCCGGACACGGCTTTTTACTGGA
GAAGCCTGAAGTAGTAGGGGAGATGGTAGTGGGATTTTTGAAATCTCTCC
CTACTTGGGTGCCGGAGGCGTTGATAAATCATTTGAAAAGTCATCCTTCC
ACGATCACCATTTGAGCGAGGAAGAAATGAGAGGGAGGCGACGTATGTGT
ATAAGTGTGTGGGAGCGGTAATAAGGTGTTTTATTTTTGATTGAATATTT
AAGAGGGTGAGACGGAAATGCAATTTCCAAAGTCGTCTTCTTGCTGGGTG
CCGGTGGCGGTGAGTAATCGTCCGCCCTCCATCACATATCAACCGAAGGA
GGGGTAAAAGGAGGATAGATCCGTAGGGCTAATTGGTGGCAGAAGGAGAT
GAGATGGTTGCTGTTTTCAACAATGGCAGTAGGAAATAAATAGCAGCTAG
GGAAGGAGGATGTATGATGCTCGTGATAAGCTACTTATTTCTGTTTTATG
TGCATTTTATATTTTGCCATAAGAGACCCTTGTCATATAGAATTTTACAG
GCCCGACAAATTTCTCTGGAGAATGTGTGGCCTAGGGATGCACCCACCCA
CTCGTAAACACAGTGCGAACTCAAAAGATCAAAAGCAATAAATGAGCAGC
GAA back to topCoding sequence (CDS) from alignment at chr16:526065..528067- >NO16G01780.1 ID=NO16G01780.1|Name=NO16G01780.1|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at chr16:526065..528067- (Nannochloropsis oceanica)
ATGGCGCCCCAACAAAAAGCCAATTTTTCCTGCACTAGCGCTTCCACTTC
CATTGAGGACATGGGTACCAGCACTAATAAACTAACGCCCTTCTCCAAGG
CTCCAACGGCCGCCTCGACCACGCATGCATACACAGCGAGCAGAGCAGCG
GTTGCCGCTGCGGCACTCTCCCCACCCTTGCCAGCGGATGAAGAAGATGG
GCAGAAAGGCGAAATACTGGCTGGCACTCACTTCATCCTGGAAGGCCCCG
CCTCCGGGAAGCTGGTTGTGTGTGTCCCGGGTTTGGGTGGGCCTCACTGG
TACTTTGACGAGGTTGCCCCCTTCTTGCTTCAAGCAGGTTTCAGGGTTTT
GCGGTACGACTTGGTGGGCCGTGGGCATTCGAAGCCACCATCACGCACTC
GTCGGCCGTCGTGCTTTTGTAATGGCGTGGCCCGGGAGAAAGATCCATAT
GGCATGGTTGGTCATGTCGCCCAACTTCGTCGCCTACTGGTAAACCTCGA
TCTCGTTGCCAAAAACAACGGCGACGATCGAATTTCTTCCTCAGCCTGCC
CCCAGCCTGACTGTGATGATACCGACCTGAGCGAGATCGACGATGAAATT
CTCTCCCCCTTGCCCATGTCTGCGATTCACTTGATCGGCCATAGCATGGG
AGGGGCCATTGCCGTTGGGTACGCCGATTGCTATCCTGAAGATGTGGCCT
CCCTCACCTTGCTCACTCCCGCCGGCTTGATGGACAAAGATGTATTTTAT
CTTTTACGGGCCTTGCCTTGGTTCGTGCAATCGATAGTCCAGCACTGTCT
CCGTCGGGGCGTGCTCAATGGCATTCGGAACGACTTCGTGCGACATGGGA
CGGAGGTAGAGAATAGAGCGGTGGCTCATGCGCGGGCCATGCATGAGCGG
AATCCGCATGCTTTTCCTGCCATTTTCCGGAGTATTTTGGCTTTTCCCTT
TGCGGGGCTGGAGAATACGATTCGGAGATTGTCCGGTGCGAGGTTACCTA
CGTTGTTGGTATGGGCGGAGTATGATAGGGTGTTGCCGTTTGAACCGCAG
TTTGGCCGATGGAAGGCCTTGTTGAAAACGGGGCAGAACGTGAGGTATGA
GGTGGTGAAGGAGGCCGGACACGGCTTTTTACTGGAGAAGCCTGAAGTAG
TAGGGGAGATGGTAGTGGGATTTTTGAAATCTCTCCCTACTTGGGTGCCG
GAGGCGTTGATAAATCATTTGAAAAGTCATCCTTCCACGATCACCATTTG
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