NO16G01660.1, NO16G01660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01660.1
Unique NameNO16G01660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1569
Alignment locationchr16:494410..495978 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:494410..495978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01660.1 vs.
Match: EWM23989.1 (trna guanosine-2 -o-methyltransferase trm11 [Nannochloropsis gaditana])

HSP 1 Score: 407.5 bits (1046), Expect = 6.100e-110
Identity = 234/514 (45.53%), Postives = 306/514 (59.53%), Query Frame = 0 
Query:    8 LLLPSLFVLLLTSHSYGFQQHQLFVAFRNPSRNTMGFRVGPQTNYLLPQVEFLSAFNASNQHTSSSSSIALRPLTSQPTIPFYSIERSDGDDTTDFEYQLVRTVQRCILAYGLFQILANGESLAAAAANAAGLDMPISRDEIHPTAMSS------GMGNIIKLKWRVSLVDLRIGNNKASKSTDRDSVVLQAFHPYFHTVANLDPALQQRDERGPPPDLDFVIFLLPRQDGVLLCRRLTKCPAIGNGYTYACTPRRPRSGILRLLAERRQKAVVITPTAMEPEIAWAMNNLARVQVGSKVLDPFVGSGSILFAASLLGAQELVGTDAAVELVGEGTGTAKQEIMKSFIYSIDEFLPWVPLSASVRPVPKLGQADMLAWESYPLWFRREYYDCIVTDPPYDLKAKVQGTTTGAAGAAGAAKERETDLAKERQQAAMPAIKKLIEVADHGLVAGGHLVFFFPEWGKHGLDGKEAGCDSVIKPPSAFPQLPPSLHLVAILPQIFSPTFVRWLACVEK 516
            LL   LF+L   S  +GF    L +AFR+PSRNT GF  G + NY+LPQ EFL+A N S Q ++ + S+ALRP     TIPFYSI   D      F   L    +RCIL YGLF +LA G++ +  AA+A       S+   H   M S       +   +  +WRV +V +   N +   S+ +    + AF P+ H  A LDP L+Q DERGPPP+LDF IF+ P+   VLLC RL + P  G GYT+A  PRRPRSG+L+ LA  R+KA  I+PTAM+PE+AW MNN+  V+  S+V DPF+GSGS+LF ASLLGA+EL G+DAA EL+G  +   KQ I+KSF Y  ++F  WV    S  PVP L QAD+L+ + +PL FR  YYD IVTDPPY++KAKV G    A          +T  A  RQQ  +P I  LI++A   LV GG LVFF PEW K  +   +    +++       + P +  +V  LPQ FSP+F RWL C+EK
Sbjct:   22 LLFILLFLLPARSFQHGFHYQDLVIAFRHPSRNTKGFCTGVEKNYVLPQFEFLAALNTS-QCSTFAKSLALRPFFHSSTIPFYSIRYGDDIVGPYFTKDLADVSRRCILTYGLFHLLAAGKNPSDTAASACKASN--SKGYNHKKGMFSTTIPKYSLSTKLGKRWRVGVVGVSDQNEEILLSSRQKENAVNAFQPFLHGTAGLDPTLRQLDERGPPPELDFFIFIFPKCGQVLLCLRLAQGPGTGKGYTFASKPRRPRSGVLKALAAYREKATFISPTAMDPELAWVMNNMGGVRKRSRVFDPFMGSGSLLFTASLLGAEELFGSDAAQELMGGESRVNKQLIIKSFAYDKNDFSQWVDSLTS--PVPVLTQADILSRQLHPL-FRSGYYDSIVTDPPYNIKAKVFGKAETAT---------DTKAATARQQTIIPVIFALIDIAASVLVPGGRLVFFLPEWTKQDIGCNKKSDANILS--YMLSRTPKAFKVVFTLPQTFSPSFTRWLVCLEK 518
The following BLAST results are available for this feature:
BLAST of NO16G01660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23989.16.100e-11045.53trna guanosine-2 -o-methyltransferase trm11 [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01660NO16G01660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01660.1NO16G01660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01660.1.cds1NO16G01660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01660.1 ID=NO16G01660.1|Name=NO16G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1569bp
ATGCGATGGCAGTACCGCCCCCTACTCCTCCCTTCCCTTTTCGTCCTCCT
ATTAACGTCCCATAGCTATGGATTCCAGCAACACCAGCTCTTCGTCGCCT
TTCGCAACCCTAGCCGCAACACAATGGGCTTCCGCGTAGGACCGCAAACA
AATTATTTATTGCCTCAGGTTGAATTTCTCTCTGCGTTCAATGCCAGCAA
CCAGCACACTAGCAGTAGTAGCAGCATCGCACTTCGACCCTTGACAAGCC
AACCCACTATTCCCTTCTACAGTATTGAGCGCAGCGATGGCGACGATACA
ACAGACTTCGAATATCAACTTGTACGGACGGTGCAGCGCTGTATTCTCGC
CTACGGTCTCTTTCAGATCTTGGCGAATGGTGAGAGCTTGGCAGCCGCAG
CTGCAAATGCTGCTGGTTTGGATATGCCAATAAGCAGGGATGAAATCCAC
CCCACCGCCATGTCTTCTGGGATGGGCAATATAATCAAACTCAAATGGCG
AGTCAGTCTGGTAGATTTGCGAATCGGCAACAATAAAGCGTCCAAATCAA
CAGACCGCGACTCTGTTGTCCTTCAAGCCTTTCACCCCTATTTCCACACC
GTGGCAAACCTCGACCCAGCCCTACAGCAACGCGACGAGCGTGGCCCTCC
CCCAGACCTGGATTTTGTCATTTTTCTCCTTCCACGGCAAGATGGAGTGC
TCTTGTGTCGACGACTGACCAAATGTCCTGCTATTGGAAATGGCTACACC
TACGCCTGTACCCCACGCAGGCCACGGAGTGGTATCCTCAGGCTTTTGGC
CGAACGGAGACAAAAAGCAGTGGTCATCACCCCAACAGCGATGGAACCTG
AAATAGCGTGGGCGATGAATAACTTGGCTAGGGTGCAGGTAGGAAGCAAG
GTACTCGACCCCTTTGTGGGCTCTGGTAGTATCTTATTTGCTGCGAGCCT
GCTAGGGGCCCAGGAGTTAGTAGGGACTGATGCAGCCGTCGAGCTTGTTG
GGGAGGGAACGGGGACGGCGAAACAGGAAATAATGAAGTCGTTTATATAT
TCAATCGACGAATTCCTACCGTGGGTGCCACTATCGGCCAGCGTGAGGCC
TGTGCCAAAACTGGGACAGGCTGATATGTTGGCGTGGGAAAGCTACCCGC
TCTGGTTTCGGCGGGAGTACTACGACTGTATTGTAACTGACCCTCCATAT
GACCTAAAGGCTAAAGTACAAGGAACGACAACAGGAGCAGCAGGAGCAGC
AGGAGCAGCAAAAGAAAGAGAGACGGATCTGGCGAAGGAGAGGCAGCAAG
CTGCTATGCCAGCGATAAAGAAGCTAATTGAGGTGGCGGATCATGGGCTT
GTCGCCGGTGGTCATCTTGTCTTTTTTTTTCCAGAGTGGGGAAAACATGG
TCTTGACGGCAAAGAGGCTGGATGTGACAGCGTCATCAAGCCTCCTTCTG
CGTTTCCGCAGCTCCCTCCATCCCTTCACCTTGTCGCCATTTTGCCCCAG
ATTTTCTCGCCCACCTTCGTCCGTTGGCTTGCGTGCGTGGAGAAGAGAGG
ACGAATTGCAAGACAATGA
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protein sequence of NO16G01660.1

>NO16G01660.1-protein ID=NO16G01660.1-protein|Name=NO16G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp
MRWQYRPLLLPSLFVLLLTSHSYGFQQHQLFVAFRNPSRNTMGFRVGPQT
NYLLPQVEFLSAFNASNQHTSSSSSIALRPLTSQPTIPFYSIERSDGDDT
TDFEYQLVRTVQRCILAYGLFQILANGESLAAAAANAAGLDMPISRDEIH
PTAMSSGMGNIIKLKWRVSLVDLRIGNNKASKSTDRDSVVLQAFHPYFHT
VANLDPALQQRDERGPPPDLDFVIFLLPRQDGVLLCRRLTKCPAIGNGYT
YACTPRRPRSGILRLLAERRQKAVVITPTAMEPEIAWAMNNLARVQVGSK
VLDPFVGSGSILFAASLLGAQELVGTDAAVELVGEGTGTAKQEIMKSFIY
SIDEFLPWVPLSASVRPVPKLGQADMLAWESYPLWFRREYYDCIVTDPPY
DLKAKVQGTTTGAAGAAGAAKERETDLAKERQQAAMPAIKKLIEVADHGL
VAGGHLVFFFPEWGKHGLDGKEAGCDSVIKPPSAFPQLPPSLHLVAILPQ
IFSPTFVRWLACVEKRGRIARQ*
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mRNA from alignment at chr16:494410..495978+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01660.1 ID=NO16G01660.1|Name=NO16G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1569bp|location=Sequence derived from alignment at chr16:494410..495978+ (Nannochloropsis oceanica)
ATGCGATGGCAGTACCGCCCCCTACTCCTCCCTTCCCTTTTCGTCCTCCT
ATTAACGTCCCATAGCTATGGATTCCAGCAACACCAGCTCTTCGTCGCCT
TTCGCAACCCTAGCCGCAACACAATGGGCTTCCGCGTAGGACCGCAAACA
AATTATTTATTGCCTCAGGTTGAATTTCTCTCTGCGTTCAATGCCAGCAA
CCAGCACACTAGCAGTAGTAGCAGCATCGCACTTCGACCCTTGACAAGCC
AACCCACTATTCCCTTCTACAGTATTGAGCGCAGCGATGGCGACGATACA
ACAGACTTCGAATATCAACTTGTACGGACGGTGCAGCGCTGTATTCTCGC
CTACGGTCTCTTTCAGATCTTGGCGAATGGTGAGAGCTTGGCAGCCGCAG
CTGCAAATGCTGCTGGTTTGGATATGCCAATAAGCAGGGATGAAATCCAC
CCCACCGCCATGTCTTCTGGGATGGGCAATATAATCAAACTCAAATGGCG
AGTCAGTCTGGTAGATTTGCGAATCGGCAACAATAAAGCGTCCAAATCAA
CAGACCGCGACTCTGTTGTCCTTCAAGCCTTTCACCCCTATTTCCACACC
GTGGCAAACCTCGACCCAGCCCTACAGCAACGCGACGAGCGTGGCCCTCC
CCCAGACCTGGATTTTGTCATTTTTCTCCTTCCACGGCAAGATGGAGTGC
TCTTGTGTCGACGACTGACCAAATGTCCTGCTATTGGAAATGGCTACACC
TACGCCTGTACCCCACGCAGGCCACGGAGTGGTATCCTCAGGCTTTTGGC
CGAACGGAGACAAAAAGCAGTGGTCATCACCCCAACAGCGATGGAACCTG
AAATAGCGTGGGCGATGAATAACTTGGCTAGGGTGCAGGTAGGAAGCAAG
GTACTCGACCCCTTTGTGGGCTCTGGTAGTATCTTATTTGCTGCGAGCCT
GCTAGGGGCCCAGGAGTTAGTAGGGACTGATGCAGCCGTCGAGCTTGTTG
GGGAGGGAACGGGGACGGCGAAACAGGAAATAATGAAGTCGTTTATATAT
TCAATCGACGAATTCCTACCGTGGGTGCCACTATCGGCCAGCGTGAGGCC
TGTGCCAAAACTGGGACAGGCTGATATGTTGGCGTGGGAAAGCTACCCGC
TCTGGTTTCGGCGGGAGTACTACGACTGTATTGTAACTGACCCTCCATAT
GACCTAAAGGCTAAAGTACAAGGAACGACAACAGGAGCAGCAGGAGCAGC
AGGAGCAGCAAAAGAAAGAGAGACGGATCTGGCGAAGGAGAGGCAGCAAG
CTGCTATGCCAGCGATAAAGAAGCTAATTGAGGTGGCGGATCATGGGCTT
GTCGCCGGTGGTCATCTTGTCTTTTTTTTTCCAGAGTGGGGAAAACATGG
TCTTGACGGCAAAGAGGCTGGATGTGACAGCGTCATCAAGCCTCCTTCTG
CGTTTCCGCAGCTCCCTCCATCCCTTCACCTTGTCGCCATTTTGCCCCAG
ATTTTCTCGCCCACCTTCGTCCGTTGGCTTGCGTGCGTGGAGAAGAGAGG
ACGAATTGCAAGACAATGA
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Coding sequence (CDS) from alignment at chr16:494410..495978+

>NO16G01660.1 ID=NO16G01660.1|Name=NO16G01660.1|organism=Nannochloropsis oceanica|type=CDS|length=1569bp|location=Sequence derived from alignment at chr16:494410..495978+ (Nannochloropsis oceanica)
ATGCGATGGCAGTACCGCCCCCTACTCCTCCCTTCCCTTTTCGTCCTCCT
ATTAACGTCCCATAGCTATGGATTCCAGCAACACCAGCTCTTCGTCGCCT
TTCGCAACCCTAGCCGCAACACAATGGGCTTCCGCGTAGGACCGCAAACA
AATTATTTATTGCCTCAGGTTGAATTTCTCTCTGCGTTCAATGCCAGCAA
CCAGCACACTAGCAGTAGTAGCAGCATCGCACTTCGACCCTTGACAAGCC
AACCCACTATTCCCTTCTACAGTATTGAGCGCAGCGATGGCGACGATACA
ACAGACTTCGAATATCAACTTGTACGGACGGTGCAGCGCTGTATTCTCGC
CTACGGTCTCTTTCAGATCTTGGCGAATGGTGAGAGCTTGGCAGCCGCAG
CTGCAAATGCTGCTGGTTTGGATATGCCAATAAGCAGGGATGAAATCCAC
CCCACCGCCATGTCTTCTGGGATGGGCAATATAATCAAACTCAAATGGCG
AGTCAGTCTGGTAGATTTGCGAATCGGCAACAATAAAGCGTCCAAATCAA
CAGACCGCGACTCTGTTGTCCTTCAAGCCTTTCACCCCTATTTCCACACC
GTGGCAAACCTCGACCCAGCCCTACAGCAACGCGACGAGCGTGGCCCTCC
CCCAGACCTGGATTTTGTCATTTTTCTCCTTCCACGGCAAGATGGAGTGC
TCTTGTGTCGACGACTGACCAAATGTCCTGCTATTGGAAATGGCTACACC
TACGCCTGTACCCCACGCAGGCCACGGAGTGGTATCCTCAGGCTTTTGGC
CGAACGGAGACAAAAAGCAGTGGTCATCACCCCAACAGCGATGGAACCTG
AAATAGCGTGGGCGATGAATAACTTGGCTAGGGTGCAGGTAGGAAGCAAG
GTACTCGACCCCTTTGTGGGCTCTGGTAGTATCTTATTTGCTGCGAGCCT
GCTAGGGGCCCAGGAGTTAGTAGGGACTGATGCAGCCGTCGAGCTTGTTG
GGGAGGGAACGGGGACGGCGAAACAGGAAATAATGAAGTCGTTTATATAT
TCAATCGACGAATTCCTACCGTGGGTGCCACTATCGGCCAGCGTGAGGCC
TGTGCCAAAACTGGGACAGGCTGATATGTTGGCGTGGGAAAGCTACCCGC
TCTGGTTTCGGCGGGAGTACTACGACTGTATTGTAACTGACCCTCCATAT
GACCTAAAGGCTAAAGTACAAGGAACGACAACAGGAGCAGCAGGAGCAGC
AGGAGCAGCAAAAGAAAGAGAGACGGATCTGGCGAAGGAGAGGCAGCAAG
CTGCTATGCCAGCGATAAAGAAGCTAATTGAGGTGGCGGATCATGGGCTT
GTCGCCGGTGGTCATCTTGTCTTTTTTTTTCCAGAGTGGGGAAAACATGG
TCTTGACGGCAAAGAGGCTGGATGTGACAGCGTCATCAAGCCTCCTTCTG
CGTTTCCGCAGCTCCCTCCATCCCTTCACCTTGTCGCCATTTTGCCCCAG
ATTTTCTCGCCCACCTTCGTCCGTTGGCTTGCGTGCGTGGAGAAGAGAGG
ACGAATTGCAAGACAATGA
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Synonyms
Publications