NO16G01500.1, NO16G01500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01500.1
Unique NameNO16G01500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1242
Alignment locationchr16:455728..457147 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:455728..457147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO16G01500.1 vs.
Match: EWM23984.1 (hypothetical protein Naga_100027g18 [Nannochloropsis gaditana])

HSP 1 Score: 151.4 bits (381), Expect = 6.300e-33
Identity = 112/244 (45.90%), Postives = 142/244 (58.20%), Query Frame = 0 
Query:   93 MVKEAMYRDVFRRVEQALSLTSAWSVPQLAMVLGGEQAVKLAECILSEYQKRYNNSLQDGGRGGGQARPFAQQSLYVVAAFFLATKKLKIKIDKKKLLDRASAPTQELTAVCTSMQEMCADLVGPSTTGGRRSSIISIDRSAPSSYSYSNSSAKTKKRGVAGEERRGEDEFLVFQNQSQDSAARQSQQSSSLAPSEASVTSSSFHSSRAAVDVVGGSAQKWARLSPSTTIRPPAPALEGTAAPA 337
            MVKE  YRDV RR E AL LT++WS PQ A+VLGGEQAV LAE  L+EYQ RY +SLQ    GGG+AR  +QQSLYV AAFFLA KKLK+ +DKK+LL+ + A   EL+AVC SMQE CADLVG  T    R S++S   +AP+S       +  + RG       G ++ L+  ++      R    S      E+S  SSS  SS   +    G AQK +R  P+     P P     A+P+
Sbjct:    1 MVKETSYRDVLRRAEHALELTASWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSLQG---GGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVG--TPAKNRRSLLS--STAPTS-----DLSTDRTRGTTPAHGEGTEDHLLLSSREPAPPLRGLSLS-----RESSAHSSSSTSSHLPLLGSSGPAQKRSR--PNEANPCPRPGHLAGASPS 225
The following BLAST results are available for this feature:
BLAST of NO16G01500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23984.16.300e-3345.90hypothetical protein Naga_100027g18 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01500NO16G01500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01500.1NO16G01500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01500.1.cds1NO16G01500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01500.1.cds2NO16G01500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01500.1.cds3NO16G01500.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01500.1 ID=NO16G01500.1|Name=NO16G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1242bp
ATGAGTGCCGGAGGAGGATTGGCCAGGGTAGAGGCACCTTCTACTGCTCC
AGCAGGACCAACAACGCAAGTTGAGTGCTTGCTTCTTCGCCTAGGAGGAA
ACTTCCCAGCCGAGGTGGGCAGGCTTGCAAACCAGTTGCTTCGGAAACTG
GCCGTCAAGTGTAAGCCGGGAAGCCTGGGAAAGTTTGAGGTATGCCGGCC
GGCGGTGTGTGTTGAACTGGCTTGTCGACAATGCGGGTATTTGAGTGTCT
CTCGGGACTCGTTGGTGCAGCAGAGCATGGTCAAGGAGGCCATGTACCGG
GACGTCTTTCGCCGGGTGGAGCAAGCCCTTAGCTTGACGAGTGCCTGGAG
CGTGCCGCAGTTAGCCATGGTATTGGGAGGCGAGCAAGCTGTTAAGCTAG
CCGAATGCATATTGTCGGAGTACCAGAAGCGCTACAACAATTCCTTGCAG
GACGGGGGCCGGGGGGGCGGCCAGGCGCGGCCCTTTGCTCAGCAGTCCTT
GTACGTGGTAGCTGCATTTTTCCTGGCCACCAAGAAGCTCAAGATCAAGA
TTGACAAGAAGAAGCTGTTGGACAGGGCCAGTGCCCCAACTCAGGAACTT
ACCGCTGTTTGCACTTCCATGCAAGAGATGTGCGCAGACCTCGTAGGTCC
GAGTACAACAGGAGGCCGACGTTCCTCCATCATAAGCATAGATCGGAGCG
CCCCATCTTCTTATTCTTATTCTAATTCCTCCGCCAAGACCAAGAAACGA
GGAGTAGCAGGGGAGGAAAGAAGAGGGGAGGATGAATTCCTCGTCTTTCA
AAATCAAAGCCAAGACTCGGCTGCGCGACAGTCGCAGCAATCATCCTCTT
TGGCGCCCAGCGAGGCATCAGTCACCTCCTCGTCTTTCCATTCCTCACGG
GCCGCTGTCGATGTGGTAGGGGGATCAGCACAAAAGTGGGCCCGTCTCAG
CCCCAGCACCACTATCCGCCCTCCTGCACCAGCACTAGAAGGAACAGCAG
CACCAGCACTACAAGTGCGCGCCATTTCAATCCTGAACCCATCCACAGTC
GTCGTACCACCCCGGAGGCTGTCCTTCAAGAACGAGGAAGAGAAGTCAAT
ATACGAACAGTGGAAACGGACTGTGCTCGCAGCGGCCATCAAGAAATCGC
GGCAAAGTGTAGTGGGCAATGGAGTGGTCAAGGAAAGCAACATCCCAACC
AGCACATCTCAGCAGCAACACAGCAAAAAAAAACAGGTTTGA
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protein sequence of NO16G01500.1

>NO16G01500.1-protein ID=NO16G01500.1-protein|Name=NO16G01500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MSAGGGLARVEAPSTAPAGPTTQVECLLLRLGGNFPAEVGRLANQLLRKL
AVKCKPGSLGKFEVCRPAVCVELACRQCGYLSVSRDSLVQQSMVKEAMYR
DVFRRVEQALSLTSAWSVPQLAMVLGGEQAVKLAECILSEYQKRYNNSLQ
DGGRGGGQARPFAQQSLYVVAAFFLATKKLKIKIDKKKLLDRASAPTQEL
TAVCTSMQEMCADLVGPSTTGGRRSSIISIDRSAPSSYSYSNSSAKTKKR
GVAGEERRGEDEFLVFQNQSQDSAARQSQQSSSLAPSEASVTSSSFHSSR
AAVDVVGGSAQKWARLSPSTTIRPPAPALEGTAAPALQVRAISILNPSTV
VVPPRRLSFKNEEEKSIYEQWKRTVLAAAIKKSRQSVVGNGVVKESNIPT
STSQQQHSKKKQV*
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mRNA from alignment at chr16:455728..457147-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01500.1 ID=NO16G01500.1|Name=NO16G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1420bp|location=Sequence derived from alignment at chr16:455728..457147- (Nannochloropsis oceanica)
ATGAGTGCCGGAGGAGGATTGGCCAGGGTAGAGGCACCTTCTACTGCTCC
AGCAGGACCAACAACGCAAGTTGAGTGCTTGCTTCTTCGCCTAGGAGGAA
ACTTCCCAGCCGAGGTGGGCAGGCTTGCAAACCAGTTGCTTCGGAAACTG
GCCGTCAAGTGTAAGCCGGGAAGCCTGGGAAAGTTTGAGGTATGCCGGCC
GGCGGTGTGTGTTGAACTGGCTTGTCGACAATGCGGGTATTTGAGTGTCT
CTCGGGACTCGTTGGTGCAGCAGAGCATGGTCAAGGAGGCCATGTACCGG
GACGTCTTTCGCCGGGTGGAGCAAGCCCTTAGCTTGACGAGTGCCTGGAG
CGTGCCGCAGTTAGCCATGGTATTGGGAGGCGAGCAAGCTGTTAAGCTAG
CCGAATGCATATTGTCGGAGTACCAGAAGCGCTACAACAATTCCTTGCAG
GACGGGGGCCGGGGGGGCGGCCAGGCGCGGCCCTTTGCTCAGCAGTCCTT
GTACGTGGTAGCTGCATTTTTCCTGGCCACCAAGAAGCTCAAGGTAAGAA
AATTGATACTTCCGGCATCTACGGGAAACGAATTTAACGTCTGTCTTACT
TAATTTTTGTTCTCATCTCGACGCACAGATCAAGATTGACAAGAAGAAGC
TGTTGGACAGGGCCAGTGCCCCAACTCAGGAACTTACCGCTGTTTGCACT
TCCATGCAAGAGATGTGCGCAGACCTCGTAGGTCCGAGTACAACAGGAGG
CCGACGTTCCTCCATCATAAGCATAGATCGGAGCGCCCCATCTTCTTATT
CTTATTCTAATTCCTCCGCCAAGACCAAGAAACGAGGAGTAGCAGGGGAG
GAAAGAAGAGGGGAGGATGAATTCCTCGTCTTTCAAAATCAAAGCCAAGA
CTCGGCTGCGCGACAGTCGCAGCAATCATCCTCTTTGGCGCCCAGCGAGG
CATCAGTCACCTCCTCGTCTTTCCATTCCTCACGGGCCGCTGTCGATGTG
GTAGGGGGATCAGCACAAAAGTGGGCCCGTCTCAGCCCCAGCACCACTAT
CCGCCCTCCTGCACCAGCACTAGAAGGAACAGCAGCACCAGCACTACAAG
TGCGCGCCATTTCAATCCTGAACCGTAAGTCCTCCATACTAGGAGGGTCG
GCTGGTGGTATCCAGTCCGTCGGTGAAGGGGGTAGGAGTGAACCGCAACT
ACCAACACCTGCTACAGCATCCACAGTCGTCGTACCACCCCGGAGGCTGT
CCTTCAAGAACGAGGAAGAGAAGTCAATATACGAACAGTGGAAACGGACT
GTGCTCGCAGCGGCCATCAAGAAATCGCGGCAAAGTGTAGTGGGCAATGG
AGTGGTCAAGGAAAGCAACATCCCAACCAGCACATCTCAGCAGCAACACA
GCAAAAAAAAACAGGTTTGA
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Coding sequence (CDS) from alignment at chr16:455728..457147-

>NO16G01500.1 ID=NO16G01500.1|Name=NO16G01500.1|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at chr16:455728..457147- (Nannochloropsis oceanica)
ATGAGTGCCGGAGGAGGATTGGCCAGGGTAGAGGCACCTTCTACTGCTCC
AGCAGGACCAACAACGCAAGTTGAGTGCTTGCTTCTTCGCCTAGGAGGAA
ACTTCCCAGCCGAGGTGGGCAGGCTTGCAAACCAGTTGCTTCGGAAACTG
GCCGTCAAGTGTAAGCCGGGAAGCCTGGGAAAGTTTGAGGTATGCCGGCC
GGCGGTGTGTGTTGAACTGGCTTGTCGACAATGCGGGTATTTGAGTGTCT
CTCGGGACTCGTTGGTGCAGCAGAGCATGGTCAAGGAGGCCATGTACCGG
GACGTCTTTCGCCGGGTGGAGCAAGCCCTTAGCTTGACGAGTGCCTGGAG
CGTGCCGCAGTTAGCCATGGTATTGGGAGGCGAGCAAGCTGTTAAGCTAG
CCGAATGCATATTGTCGGAGTACCAGAAGCGCTACAACAATTCCTTGCAG
GACGGGGGCCGGGGGGGCGGCCAGGCGCGGCCCTTTGCTCAGCAGTCCTT
GTACGTGGTAGCTGCATTTTTCCTGGCCACCAAGAAGCTCAAGATCAAGA
TTGACAAGAAGAAGCTGTTGGACAGGGCCAGTGCCCCAACTCAGGAACTT
ACCGCTGTTTGCACTTCCATGCAAGAGATGTGCGCAGACCTCGTAGGTCC
GAGTACAACAGGAGGCCGACGTTCCTCCATCATAAGCATAGATCGGAGCG
CCCCATCTTCTTATTCTTATTCTAATTCCTCCGCCAAGACCAAGAAACGA
GGAGTAGCAGGGGAGGAAAGAAGAGGGGAGGATGAATTCCTCGTCTTTCA
AAATCAAAGCCAAGACTCGGCTGCGCGACAGTCGCAGCAATCATCCTCTT
TGGCGCCCAGCGAGGCATCAGTCACCTCCTCGTCTTTCCATTCCTCACGG
GCCGCTGTCGATGTGGTAGGGGGATCAGCACAAAAGTGGGCCCGTCTCAG
CCCCAGCACCACTATCCGCCCTCCTGCACCAGCACTAGAAGGAACAGCAG
CACCAGCACTACAAGTGCGCGCCATTTCAATCCTGAACCCATCCACAGTC
GTCGTACCACCCCGGAGGCTGTCCTTCAAGAACGAGGAAGAGAAGTCAAT
ATACGAACAGTGGAAACGGACTGTGCTCGCAGCGGCCATCAAGAAATCGC
GGCAAAGTGTAGTGGGCAATGGAGTGGTCAAGGAAAGCAACATCCCAACC
AGCACATCTCAGCAGCAACACAGCAAAAAAAAACAGGTTTGA
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Synonyms
Publications