NO16G01410.1, NO16G01410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01410.1
Unique NameNO16G01410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length868
Alignment locationchr16:435022..436207 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:435022..436207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01410.1 vs.
Match: EWM23970.1 (glutathione peroxidase [Nannochloropsis gaditana])

HSP 1 Score: 278.5 bits (711), Expect = 1.900e-71
Identity = 136/198 (68.69%), Postives = 161/198 (81.31%), Query Frame = 0 
Query:   29 LAAAGPRNMALGFFLLASFTSTACAFAAPRTLYDFSLKDATGTTQSLAAYKDKPVTLIVNVASRCGYTDSNYKQLQTLYEKYQKDGLQIFAMPTNEFGGQEPGSDADIIKFTKDKYAVTFPVFSKLKVNGGDASEIYRWLKSETKDPPAETNKDIRWNFTKFLLVNGMPYKRFAHDKAPKDFESDIVTALRAAANKEL 227
            L ++ P  +A     L S  S++ AFA PRTLYDFSLKD TG TQSL+ YKDKPV LIVNVASRCGYTDSNY+QLQ L EKY  DGLQ+ AMP+NEFGGQEPGSDA+I+KFTK+KYAVTFPVFSKL VNG  AS++Y+WLK+ET    + ++ DIRWNFTKFLLVNG+P KRFAH++AP DFE +I+ ALR AA+KEL
Sbjct:    5 LFSSKPTCLAFKVLFLTSLASSS-AFALPRTLYDFSLKDGTGKTQSLSVYKDKPVVLIVNVASRCGYTDSNYRQLQVLQEKYGDDGLQVLAMPSNEFGGQEPGSDAEILKFTKEKYAVTFPVFSKLLVNGPQASDLYKWLKAETPKDSSSSSADIRWNFTKFLLVNGLPVKRFAHNQAPNDFEGEILQALRDAASKEL 201
The following BLAST results are available for this feature:
BLAST of NO16G01410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23970.11.900e-7168.69glutathione peroxidase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01410NO16G01410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01410.1NO16G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01410.1.cds1NO16G01410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01410.1.cds2NO16G01410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01410.1.cds3NO16G01410.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01410.1 ID=NO16G01410.1|Name=NO16G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=868bp
GAATTGTTTCGCCAAAAAAAACACGGAGCAAGTTTGTTTGCATGTCCATC
TCGTGCGTCATTACACACCACCTACGTATACAGCTCGCTACAACCATCCA
ACAAAGCACTATGCCGACTCACATCCTCGCTGCTGCCGGGCCCCGCAACA
TGGCCTTGGGATTCTTCCTTCTGGCCTCGTTCACTTCGACGGCCTGTGCG
TTCGCCGCTCCTCGTACTCTCTACGATTTTTCGCTCAAGGATGCCACGGG
CACGACGCAGAGCCTCGCCGCCTACAAAGACAAGCCTGTCACGCTGATCG
TGAACGTGGCATCTCGTTGCGGATATACCGACAGTAATTACAAGCAGCTC
CAAACTCTTTATGAAAAGTACCAGAAGGATGGCTTGCAGATCTTTGCCAT
GCCCACCAACGAATTTGGAGGACAGGAGCCGGGCTCTGATGCTGACATCA
TCAAGTTCACAAAGGACAAATACGCCGTTACGTTTCCCGTGTTTAGCAAG
CTCAAGGTGAATGGTGGTGATGCTTCAGAGATCTACCGCTGGCTTAAGTC
TGAAACGAAGGACCCGCCTGCTGAAACCAATAAAGATATCCGGTGGAATT
TTACCAAGTTTTTGCTCGTTAACGGCATGCCCTACAAGCGTTTTGCCCAC
GATAAGGCCCCGAAGGATTTTGAATCTGACATCGTAACCGCTTTGCGCGC
AGCTGCGAATAAGGAGCTATAAGAGAGCATTAGTACGTGAGAGAACGGAG
AGGTGTAGACCTCTAGTGGCGCGCAGGAAGCGAGACCGAGTGACTGAAAG
TCTCTCTCCTCGATGGCGGTGGAAAAAGAAACAGACGTGACATGATTGAA
AGCAACTTAGTCAACAGT
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protein sequence of NO16G01410.1

>NO16G01410.1-protein ID=NO16G01410.1-protein|Name=NO16G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MSISCVITHHLRIQLATTIQQSTMPTHILAAAGPRNMALGFFLLASFTST
ACAFAAPRTLYDFSLKDATGTTQSLAAYKDKPVTLIVNVASRCGYTDSNY
KQLQTLYEKYQKDGLQIFAMPTNEFGGQEPGSDADIIKFTKDKYAVTFPV
FSKLKVNGGDASEIYRWLKSETKDPPAETNKDIRWNFTKFLLVNGMPYKR
FAHDKAPKDFESDIVTALRAAANKEL*
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mRNA from alignment at chr16:435022..436207-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01410.1 ID=NO16G01410.1|Name=NO16G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1186bp|location=Sequence derived from alignment at chr16:435022..436207- (Nannochloropsis oceanica)
GAATTGTTTCGCCAAAAAAAACACGGAGCAAGTTTGTTTGCATGTCCATC
TCGTGCGTCATTACACACCACCTACGTATACAGCTCGCTACAACCATCCA
ACAAAGCACTATGCCGACTCACATCCTCGCTGCTGCCGGGCCCCGCAACA
TGGCCTTGGGATTCTTCCTTCTGGCCTCGTTCACTTCGACGGCCTGTGCG
TTCGCCGCTCCTCGTACTCTCTACGATTTTTCGCTCAAGGATGCCACGGG
CACGACGCAGAGCCTCGCCGCCTACAAAGACAAGCCTGTCACGCTGATGT
AAGTCTCAAGTCGCTGGTCGGGCCCTTGGGTTTGGTATTGGAAGGTGCCA
CTTGTCACCTTCACACCCGCGTCTCTCCCTTTCTCTTTCATCCGAAAAAA
CTTCAGCGTGAACGTGGCATCTCGTTGCGGATATACCGACAGTAATTACA
AGCAGCTCCAAACTCTTTATGAAAAGTACCAGAAGGATGGCTTGCAGATC
TTTGCCATGCCCACCAACGAATTTGGAGGACAGGAGCCGGGCTCTGATGC
TGACATCATCAAGTTCACAAAGGACAAATACGCCGTTACGTTTCCCGTGT
TTAGCAAGCTCAAGGTGAATGGTGGTGATGCTTCAGAGATCTACCGCTGG
CTTAAGTCTGAAACGAAGGACCCGCCTGCTGAAACCAATAAAGATATCCG
GTGGAATTTTACCAAGGTTCGTTTATTGCACCACTTTTGTTGTGCCTGCG
TCTGAGTCAGTTTTTTAGCTTGGTAATTACGCGACGCCATCCCTTTCCTG
AGAATAAGCTGTGGTCTAGAGTCAATGTGATGGATATCTGGTTTTTGTCC
TTTCCAAGGTTAAACCCCATGGTAGAAAAATGCTGATTGGAGCACTTTCA
CGTACCTTCTCACACTCACATGACAGTTTTTGCTCGTTAACGGCATGCCC
TACAAGCGTTTTGCCCACGATAAGGCCCCGAAGGATTTTGAATCTGACAT
CGTAACCGCTTTGCGCGCAGCTGCGAATAAGGAGCTATAAGAGAGCATTA
GTACGTGAGAGAACGGAGAGGTGTAGACCTCTAGTGGCGCGCAGGAAGCG
AGACCGAGTGACTGAAAGTCTCTCTCCTCGATGGCGGTGGAAAAAGAAAC
AGACGTGACATGATTGAAAGCAACTTAGTCAACAGT
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Coding sequence (CDS) from alignment at chr16:435022..436207-

>NO16G01410.1 ID=NO16G01410.1|Name=NO16G01410.1|organism=Nannochloropsis oceanica|type=CDS|length=681bp|location=Sequence derived from alignment at chr16:435022..436207- (Nannochloropsis oceanica)
ATGTCCATCTCGTGCGTCATTACACACCACCTACGTATACAGCTCGCTAC
AACCATCCAACAAAGCACTATGCCGACTCACATCCTCGCTGCTGCCGGGC
CCCGCAACATGGCCTTGGGATTCTTCCTTCTGGCCTCGTTCACTTCGACG
GCCTGTGCGTTCGCCGCTCCTCGTACTCTCTACGATTTTTCGCTCAAGGA
TGCCACGGGCACGACGCAGAGCCTCGCCGCCTACAAAGACAAGCCTGTCA
CGCTGATCGTGAACGTGGCATCTCGTTGCGGATATACCGACAGTAATTAC
AAGCAGCTCCAAACTCTTTATGAAAAGTACCAGAAGGATGGCTTGCAGAT
CTTTGCCATGCCCACCAACGAATTTGGAGGACAGGAGCCGGGCTCTGATG
CTGACATCATCAAGTTCACAAAGGACAAATACGCCGTTACGTTTCCCGTG
TTTAGCAAGCTCAAGGTGAATGGTGGTGATGCTTCAGAGATCTACCGCTG
GCTTAAGTCTGAAACGAAGGACCCGCCTGCTGAAACCAATAAAGATATCC
GGTGGAATTTTACCAAGTTTTTGCTCGTTAACGGCATGCCCTACAAGCGT
TTTGCCCACGATAAGGCCCCGAAGGATTTTGAATCTGACATCGTAACCGC
TTTGCGCGCAGCTGCGAATAAGGAGCTATAA
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Synonyms
Publications