NO16G01380.1, NO16G01380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01380.1
Unique NameNO16G01380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2049
Alignment locationchr16:426041..428089 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:426041..428089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01380.1 vs.
Match: EWM23993.1 (nicastrin [Nannochloropsis gaditana])

HSP 1 Score: 818.5 bits (2113), Expect = 1.500e-233
Identity = 418/706 (59.21%), Postives = 505/706 (71.53%), Query Frame = 0 
Query:    1 MLNATVLDFLATY--AWTQGVIVLDEESTTIP-------SPDVLTPQGQGTPSVAFTIGPTHVWNPAGSGLTMQKYDFPVVLATAADE--GNGAAQVKAWAQHNGGLGRHGPYPRYTAVFNFYFGPTSSSL--SDPLTSADCLGWKDVEGNLVPQCLPMGGQSVWASLDGRTGLQSKPTILLTAAMDGISLFHDKTPAANEAVASILTLLAATSALRNASVSGQIDLTAAPSNLAVAFFQADEWGFAGSRRFVRDISPGKITCPVPIGGNLSRDGTGSCVGPHGVYPSVAFQDLSLEKIAHILAIDQVGVLSSPSVSAAVPLTALYNGAPPTALLEALAIASASLGIDNTSSVTPVNGAGAMPPTPLTSFLRETPGLSGAVLAGYGGAGAGAEFIDPRYHSHMDQASYLDADSLTTVANLVARTAWSLASGGEEG------MDEIVVQKEFIETFLACFTDDWDCPAMKQFREAEHDNLKNYLGQSYLYTPPVPQPPSYYSGVTASYQGLPLMRHT-----MEGGNSGLFSAWPAEKDFVPNMEDKFYVVPKPLEAFLKGWLAYTLGGGGGGATATATATTRAAVGAAANIPCKSPQDCDGLLCDNNLSSRECFIDICVCKSASFYHTALDPGLAPQPEPGIFTILDAKTPNWAEPNWASIGFAVFPDASARVEGLALGVGAGVGALSALGAWMVQRVLVKHHYFD 683
            MLN+TVL+FL     A T+GVIVL+E             SPDV TPQG GTPS AFT+GP H WNP GSGL  QK+DFPVVLA+   +  G GAAQVKAWAQHNGGL R GP PRY A F+FYFGP S S      LTSADCL W+DV GN  PQCLP+GGQSVW +  GRTGLQ+KP++LLT AMDG+S FH++TPAANEAVASILTLLAATSAL+NAS +G +DL AAP NLAVAFFQADEWGFAGSRRF RDISPG + CP  +  N SRDG+G+CVG  GVYPS+AF+DL+ +   H+LA+DQVGVL +   + ++PLTALY+  PPTA+L+A+  A+AS+       VT ++G+GA+PP+P TSF R TP LSGA+L GY     G  FIDPRYHSH D A+ LD  +L++VA LVAR  W LA+G  EG      ++ I V+  F+   L C T DWDCPAMK FR++E  NLK+YL  SYLYTPPVP+PP+YY+GV A YQGLPL++H       EG ++G+++AWPA + F     DK YVVPKPLEAFL+ WL +TLG GG  A                 + C+ P DC  L CD  LS+REC +D CVC++A+FYHTALDPGLAP PEPG+F + D   PNWAEPNW  IG AVFPDA +R+E  ALGVG GV ALS +GA ++QR L+KHHYFD
Sbjct:   99 MLNSTVLEFLKAQSPARTRGVIVLEESKDMAADFERDSVSPDVSTPQGDGTPSAAFTVGPDHAWNPRGSGLLNQKHDFPVVLASVDGDSTGVGAAQVKAWAQHNGGLRRAGPLPRYKAKFDFYFGPDSPSTRAESDLTSADCLSWRDVAGNPAPQCLPIGGQSVWGTFGGRTGLQTKPSVLLTTAMDGLSFFHERTPAANEAVASILTLLAATSALKNASRAGALDLDAAPYNLAVAFFQADEWGFAGSRRFARDISPGGVDCPATVPDNSSRDGSGACVGSDGVYPSMAFKDLAEKGFVHVLAVDQVGVLGTGGQAGSLPLTALYDKTPPTAVLDAIDRAAASMAPSQAVMVTSLDGSGALPPSPFTSFARGTPALSGAILTGY-----GETFIDPRYHSHEDTAAVLDPTALSSVAALVARAFWKLAAGPGEGAASAAELEAIGVEPAFVSDLLDCLTRDWDCPAMKAFRDSEISNLKDYLQMSYLYTPPVPRPPTYYAGVLAPYQGLPLVQHLDKSSHAEGVDTGIYAAWPAGQVFPVGAHDKAYVVPKPLEAFLRAWLGHTLGQGGEDAP----------------VACQGPSDCSDLTCDAGLSTRECVLDACVCRTAAFYHTALDPGLAPLPEPGLFAVSDPAAPNWAEPNWEDIGLAVFPDAGSRMEATALGVGVGVAALSVVGALVLQRSLIKHHYFD 783
The following BLAST results are available for this feature:
BLAST of NO16G01380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23993.11.500e-23359.21nicastrin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01380NO16G01380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01380.1NO16G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01380.1.cds1NO16G01380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01380.1 ID=NO16G01380.1|Name=NO16G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2049bp
ATGCTTAACGCCACGGTGCTTGATTTCTTGGCCACCTACGCTTGGACTCA
AGGAGTTATTGTCCTCGATGAAGAAAGCACCACTATTCCCTCTCCCGACG
TCCTAACGCCCCAAGGACAAGGCACACCGAGCGTTGCCTTCACCATAGGG
CCGACGCATGTATGGAACCCGGCGGGAAGCGGGTTAACGATGCAAAAATA
TGACTTTCCCGTGGTGCTCGCCACGGCGGCCGACGAAGGCAACGGCGCCG
CGCAGGTCAAGGCATGGGCGCAGCACAACGGCGGCTTGGGCAGGCACGGT
CCTTACCCAAGATACACGGCCGTGTTCAATTTCTACTTTGGCCCTACTTC
ATCTTCACTCTCAGACCCCCTGACGTCTGCGGATTGCCTGGGGTGGAAAG
ACGTAGAAGGCAACCTAGTCCCTCAGTGCCTCCCAATGGGGGGTCAATCA
GTATGGGCCAGTCTCGATGGCCGCACAGGCCTACAAAGCAAGCCCACCAT
TCTCCTCACAGCCGCCATGGATGGGATCTCTCTTTTCCATGACAAGACGC
CCGCCGCCAACGAAGCCGTCGCCTCCATCCTCACCCTCCTCGCCGCCACC
AGTGCTCTCCGCAACGCCTCTGTTTCCGGCCAAATCGACCTAACCGCTGC
CCCTTCTAATCTCGCGGTGGCGTTTTTCCAGGCCGACGAGTGGGGATTCG
CAGGCTCCCGTCGCTTTGTCCGCGATATTTCTCCTGGAAAAATTACTTGT
CCTGTTCCAATCGGAGGAAACCTATCACGTGACGGCACGGGCTCGTGTGT
GGGCCCTCATGGTGTCTATCCCTCCGTAGCCTTCCAAGATCTAAGTTTGG
AAAAAATAGCCCATATCCTAGCTATCGACCAGGTTGGGGTTTTGTCATCT
CCTTCTGTCTCTGCCGCTGTTCCCCTGACAGCGCTCTACAACGGTGCCCC
GCCCACGGCGTTGCTTGAAGCCTTGGCTATTGCTAGTGCCTCTTTAGGCA
TCGACAACACCTCCAGCGTGACACCCGTAAATGGAGCAGGGGCCATGCCA
CCTACCCCTCTGACGTCTTTTTTGCGGGAAACCCCTGGGTTGAGTGGGGC
GGTGTTGGCGGGGTATGGAGGAGCAGGAGCAGGAGCCGAATTTATTGACC
CGCGCTACCATTCTCACATGGATCAAGCGTCTTATTTGGACGCTGACTCA
CTCACGACAGTGGCTAACTTAGTTGCAAGGACAGCGTGGAGCTTGGCGTC
TGGTGGGGAGGAAGGGATGGACGAAATCGTGGTTCAGAAAGAGTTTATAG
AAACGTTCCTCGCGTGTTTTACGGACGACTGGGACTGCCCGGCTATGAAG
CAATTTCGAGAAGCAGAGCATGACAACTTGAAAAATTACTTGGGCCAGTC
TTATCTTTATACGCCACCGGTGCCTCAGCCGCCAAGTTATTACTCGGGCG
TTACGGCATCGTACCAAGGGTTGCCGCTGATGCGGCATACGATGGAAGGA
GGAAATAGCGGTCTTTTTTCGGCATGGCCTGCAGAGAAGGATTTTGTTCC
AAACATGGAGGACAAGTTCTACGTGGTGCCCAAGCCATTGGAAGCGTTTT
TGAAGGGCTGGCTGGCTTATACCCTGGGAGGGGGAGGAGGAGGAGCAACA
GCAACCGCAACAGCAACAACAAGAGCAGCAGTAGGAGCAGCAGCCAACAT
TCCTTGTAAATCTCCTCAGGATTGTGATGGCCTCTTATGCGACAACAATC
TCTCCTCCCGCGAATGTTTCATTGATATTTGTGTCTGCAAATCTGCCTCC
TTCTATCACACCGCCTTGGATCCCGGCCTGGCCCCTCAACCAGAACCAGG
CATATTTACAATCCTCGATGCTAAGACACCTAATTGGGCCGAACCCAACT
GGGCGAGCATTGGTTTCGCTGTCTTTCCTGACGCCAGTGCAAGAGTGGAG
GGGTTAGCGCTTGGTGTGGGGGCGGGGGTGGGAGCGCTGAGTGCTCTGGG
AGCGTGGATGGTGCAACGGGTGTTGGTGAAGCATCATTATTTTGATTAG
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protein sequence of NO16G01380.1

>NO16G01380.1-protein ID=NO16G01380.1-protein|Name=NO16G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=683bp
MLNATVLDFLATYAWTQGVIVLDEESTTIPSPDVLTPQGQGTPSVAFTIG
PTHVWNPAGSGLTMQKYDFPVVLATAADEGNGAAQVKAWAQHNGGLGRHG
PYPRYTAVFNFYFGPTSSSLSDPLTSADCLGWKDVEGNLVPQCLPMGGQS
VWASLDGRTGLQSKPTILLTAAMDGISLFHDKTPAANEAVASILTLLAAT
SALRNASVSGQIDLTAAPSNLAVAFFQADEWGFAGSRRFVRDISPGKITC
PVPIGGNLSRDGTGSCVGPHGVYPSVAFQDLSLEKIAHILAIDQVGVLSS
PSVSAAVPLTALYNGAPPTALLEALAIASASLGIDNTSSVTPVNGAGAMP
PTPLTSFLRETPGLSGAVLAGYGGAGAGAEFIDPRYHSHMDQASYLDADS
LTTVANLVARTAWSLASGGEEGMDEIVVQKEFIETFLACFTDDWDCPAMK
QFREAEHDNLKNYLGQSYLYTPPVPQPPSYYSGVTASYQGLPLMRHTMEG
GNSGLFSAWPAEKDFVPNMEDKFYVVPKPLEAFLKGWLAYTLGGGGGGAT
ATATATTRAAVGAAANIPCKSPQDCDGLLCDNNLSSRECFIDICVCKSAS
FYHTALDPGLAPQPEPGIFTILDAKTPNWAEPNWASIGFAVFPDASARVE
GLALGVGAGVGALSALGAWMVQRVLVKHHYFD*
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mRNA from alignment at chr16:426041..428089-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01380.1 ID=NO16G01380.1|Name=NO16G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2049bp|location=Sequence derived from alignment at chr16:426041..428089- (Nannochloropsis oceanica)
ATGCTTAACGCCACGGTGCTTGATTTCTTGGCCACCTACGCTTGGACTCA
AGGAGTTATTGTCCTCGATGAAGAAAGCACCACTATTCCCTCTCCCGACG
TCCTAACGCCCCAAGGACAAGGCACACCGAGCGTTGCCTTCACCATAGGG
CCGACGCATGTATGGAACCCGGCGGGAAGCGGGTTAACGATGCAAAAATA
TGACTTTCCCGTGGTGCTCGCCACGGCGGCCGACGAAGGCAACGGCGCCG
CGCAGGTCAAGGCATGGGCGCAGCACAACGGCGGCTTGGGCAGGCACGGT
CCTTACCCAAGATACACGGCCGTGTTCAATTTCTACTTTGGCCCTACTTC
ATCTTCACTCTCAGACCCCCTGACGTCTGCGGATTGCCTGGGGTGGAAAG
ACGTAGAAGGCAACCTAGTCCCTCAGTGCCTCCCAATGGGGGGTCAATCA
GTATGGGCCAGTCTCGATGGCCGCACAGGCCTACAAAGCAAGCCCACCAT
TCTCCTCACAGCCGCCATGGATGGGATCTCTCTTTTCCATGACAAGACGC
CCGCCGCCAACGAAGCCGTCGCCTCCATCCTCACCCTCCTCGCCGCCACC
AGTGCTCTCCGCAACGCCTCTGTTTCCGGCCAAATCGACCTAACCGCTGC
CCCTTCTAATCTCGCGGTGGCGTTTTTCCAGGCCGACGAGTGGGGATTCG
CAGGCTCCCGTCGCTTTGTCCGCGATATTTCTCCTGGAAAAATTACTTGT
CCTGTTCCAATCGGAGGAAACCTATCACGTGACGGCACGGGCTCGTGTGT
GGGCCCTCATGGTGTCTATCCCTCCGTAGCCTTCCAAGATCTAAGTTTGG
AAAAAATAGCCCATATCCTAGCTATCGACCAGGTTGGGGTTTTGTCATCT
CCTTCTGTCTCTGCCGCTGTTCCCCTGACAGCGCTCTACAACGGTGCCCC
GCCCACGGCGTTGCTTGAAGCCTTGGCTATTGCTAGTGCCTCTTTAGGCA
TCGACAACACCTCCAGCGTGACACCCGTAAATGGAGCAGGGGCCATGCCA
CCTACCCCTCTGACGTCTTTTTTGCGGGAAACCCCTGGGTTGAGTGGGGC
GGTGTTGGCGGGGTATGGAGGAGCAGGAGCAGGAGCCGAATTTATTGACC
CGCGCTACCATTCTCACATGGATCAAGCGTCTTATTTGGACGCTGACTCA
CTCACGACAGTGGCTAACTTAGTTGCAAGGACAGCGTGGAGCTTGGCGTC
TGGTGGGGAGGAAGGGATGGACGAAATCGTGGTTCAGAAAGAGTTTATAG
AAACGTTCCTCGCGTGTTTTACGGACGACTGGGACTGCCCGGCTATGAAG
CAATTTCGAGAAGCAGAGCATGACAACTTGAAAAATTACTTGGGCCAGTC
TTATCTTTATACGCCACCGGTGCCTCAGCCGCCAAGTTATTACTCGGGCG
TTACGGCATCGTACCAAGGGTTGCCGCTGATGCGGCATACGATGGAAGGA
GGAAATAGCGGTCTTTTTTCGGCATGGCCTGCAGAGAAGGATTTTGTTCC
AAACATGGAGGACAAGTTCTACGTGGTGCCCAAGCCATTGGAAGCGTTTT
TGAAGGGCTGGCTGGCTTATACCCTGGGAGGGGGAGGAGGAGGAGCAACA
GCAACCGCAACAGCAACAACAAGAGCAGCAGTAGGAGCAGCAGCCAACAT
TCCTTGTAAATCTCCTCAGGATTGTGATGGCCTCTTATGCGACAACAATC
TCTCCTCCCGCGAATGTTTCATTGATATTTGTGTCTGCAAATCTGCCTCC
TTCTATCACACCGCCTTGGATCCCGGCCTGGCCCCTCAACCAGAACCAGG
CATATTTACAATCCTCGATGCTAAGACACCTAATTGGGCCGAACCCAACT
GGGCGAGCATTGGTTTCGCTGTCTTTCCTGACGCCAGTGCAAGAGTGGAG
GGGTTAGCGCTTGGTGTGGGGGCGGGGGTGGGAGCGCTGAGTGCTCTGGG
AGCGTGGATGGTGCAACGGGTGTTGGTGAAGCATCATTATTTTGATTAG
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Coding sequence (CDS) from alignment at chr16:426041..428089-

>NO16G01380.1 ID=NO16G01380.1|Name=NO16G01380.1|organism=Nannochloropsis oceanica|type=CDS|length=2049bp|location=Sequence derived from alignment at chr16:426041..428089- (Nannochloropsis oceanica)
ATGCTTAACGCCACGGTGCTTGATTTCTTGGCCACCTACGCTTGGACTCA
AGGAGTTATTGTCCTCGATGAAGAAAGCACCACTATTCCCTCTCCCGACG
TCCTAACGCCCCAAGGACAAGGCACACCGAGCGTTGCCTTCACCATAGGG
CCGACGCATGTATGGAACCCGGCGGGAAGCGGGTTAACGATGCAAAAATA
TGACTTTCCCGTGGTGCTCGCCACGGCGGCCGACGAAGGCAACGGCGCCG
CGCAGGTCAAGGCATGGGCGCAGCACAACGGCGGCTTGGGCAGGCACGGT
CCTTACCCAAGATACACGGCCGTGTTCAATTTCTACTTTGGCCCTACTTC
ATCTTCACTCTCAGACCCCCTGACGTCTGCGGATTGCCTGGGGTGGAAAG
ACGTAGAAGGCAACCTAGTCCCTCAGTGCCTCCCAATGGGGGGTCAATCA
GTATGGGCCAGTCTCGATGGCCGCACAGGCCTACAAAGCAAGCCCACCAT
TCTCCTCACAGCCGCCATGGATGGGATCTCTCTTTTCCATGACAAGACGC
CCGCCGCCAACGAAGCCGTCGCCTCCATCCTCACCCTCCTCGCCGCCACC
AGTGCTCTCCGCAACGCCTCTGTTTCCGGCCAAATCGACCTAACCGCTGC
CCCTTCTAATCTCGCGGTGGCGTTTTTCCAGGCCGACGAGTGGGGATTCG
CAGGCTCCCGTCGCTTTGTCCGCGATATTTCTCCTGGAAAAATTACTTGT
CCTGTTCCAATCGGAGGAAACCTATCACGTGACGGCACGGGCTCGTGTGT
GGGCCCTCATGGTGTCTATCCCTCCGTAGCCTTCCAAGATCTAAGTTTGG
AAAAAATAGCCCATATCCTAGCTATCGACCAGGTTGGGGTTTTGTCATCT
CCTTCTGTCTCTGCCGCTGTTCCCCTGACAGCGCTCTACAACGGTGCCCC
GCCCACGGCGTTGCTTGAAGCCTTGGCTATTGCTAGTGCCTCTTTAGGCA
TCGACAACACCTCCAGCGTGACACCCGTAAATGGAGCAGGGGCCATGCCA
CCTACCCCTCTGACGTCTTTTTTGCGGGAAACCCCTGGGTTGAGTGGGGC
GGTGTTGGCGGGGTATGGAGGAGCAGGAGCAGGAGCCGAATTTATTGACC
CGCGCTACCATTCTCACATGGATCAAGCGTCTTATTTGGACGCTGACTCA
CTCACGACAGTGGCTAACTTAGTTGCAAGGACAGCGTGGAGCTTGGCGTC
TGGTGGGGAGGAAGGGATGGACGAAATCGTGGTTCAGAAAGAGTTTATAG
AAACGTTCCTCGCGTGTTTTACGGACGACTGGGACTGCCCGGCTATGAAG
CAATTTCGAGAAGCAGAGCATGACAACTTGAAAAATTACTTGGGCCAGTC
TTATCTTTATACGCCACCGGTGCCTCAGCCGCCAAGTTATTACTCGGGCG
TTACGGCATCGTACCAAGGGTTGCCGCTGATGCGGCATACGATGGAAGGA
GGAAATAGCGGTCTTTTTTCGGCATGGCCTGCAGAGAAGGATTTTGTTCC
AAACATGGAGGACAAGTTCTACGTGGTGCCCAAGCCATTGGAAGCGTTTT
TGAAGGGCTGGCTGGCTTATACCCTGGGAGGGGGAGGAGGAGGAGCAACA
GCAACCGCAACAGCAACAACAAGAGCAGCAGTAGGAGCAGCAGCCAACAT
TCCTTGTAAATCTCCTCAGGATTGTGATGGCCTCTTATGCGACAACAATC
TCTCCTCCCGCGAATGTTTCATTGATATTTGTGTCTGCAAATCTGCCTCC
TTCTATCACACCGCCTTGGATCCCGGCCTGGCCCCTCAACCAGAACCAGG
CATATTTACAATCCTCGATGCTAAGACACCTAATTGGGCCGAACCCAACT
GGGCGAGCATTGGTTTCGCTGTCTTTCCTGACGCCAGTGCAAGAGTGGAG
GGGTTAGCGCTTGGTGTGGGGGCGGGGGTGGGAGCGCTGAGTGCTCTGGG
AGCGTGGATGGTGCAACGGGTGTTGGTGAAGCATCATTATTTTGATTAG
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Synonyms
Publications