NO16G01240.1, NO16G01240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01240.1
Unique NameNO16G01240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1533
Alignment locationchr16:383052..384584 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:383052..384584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01240.1 vs.
Match: EWM24018.1 (Alpha/beta hydrolase fold-1 [Nannochloropsis gaditana])

HSP 1 Score: 513.1 bits (1320), Expect = 1.000e-141
Identity = 298/529 (56.33%), Postives = 374/529 (70.70%), Query Frame = 0 
Query:   17 GCATCSVASSCAV------GGCGAGASQRHSSSGPSSSSSC----SSSCSSAAASPSSSSRALPVSQSQQLACRDGVDAPCSNSSALKGRARVRMLEQPKNNQEHRHKQEERDRKAVRRIRHGQKKKQRRAHLNLSAKILAGIAGFWVLATTLLLTVPESQGFMTYLHWVRWPIFRDLTDLISFRLPHARNIRVKTSDGLELGGWHVLPSHKIAVEASRLPPGSRAREDFFDLALARPNTRVVIYFHGNAATRGQFNRVELVKALAATMEAHVIAIDYRGFGDSTGSPSEAGLGLDARAVWTWVQEKVGGKEGEGGPANIYLYGHSLGSGVALGLAHYLSEEAEAA--AADDSDSSSSSSSSSSSKCSLP------------------------VVPTGLILDAPFTNLSMAALHHPSALPFRLLPFVKNALLHSMHERFPSLDYIQKLNEPILILHGRRDRMIPFFLGQELYHAAQLARVRRRPDLLEDLWFSEFQEAGHNDVYAHGQWTNDVAAFMSTMELGLGERK 510
            GCA C+  S+C        G CG  ASQ H  S P  +++     SSS  SA AS  S S   P  Q QQ A ++G+D P  +  AL+ + R R+ E       HR ++ E+ R A RR  H +K K+  A  NLS+K+LAGIAG W+LATTLLLTVPE+ G +TYLHWVRWP  R+LTDL++FRLPHARNI V T+DG+ L GWHVLPSH++A  ASR P  SRARE+FFD A+ RP++R+V+YFHGNAATRGQFNRVEL+KALAATM+AHV+ +DYRGFGDSTG PSE GL LDARA+W WV+E+ G   GEGG A ++LYGHSLG+ VAL LA +L   A      +D  D SS S SSS++K S P                        V P+G+IL+APFTNLSMAAL+HPSALPFRLLPF K+AL+ SMHERFPSL+YIQ++ +PI+ILHGRRDRMIPF LG+ELYH A+LAR+R RP+ LED+WF+EF +AGH+++YA+ QWT+++  FM ++E G G  K
Sbjct:   15 GCAGCASVSACPTAAKSQGGPCGGVASQLHQDSTPRHAAAAPHSPSSSSCSAVASCCSLSPPPPRGQEQQ-AWKNGIDRPI-HDQALRAQRRARVPEP------HRQERLEKARGAERRAEH-KKWKREVAQWNLSSKLLAGIAGLWILATTLLLTVPEAHGLITYLHWVRWPPSRELTDLVAFRLPHARNIEVHTADGMLLKGWHVLPSHQVAAAASRFPLDSRAREEFFDEAMGRPDSRIVLYFHGNAATRGQFNRVELIKALAATMQAHVVTVDYRGFGDSTGWPSEEGLALDARALWAWVEERAG--RGEGG-AQVFLYGHSLGACVALELARHLPLVAALTPECSDAPDFSSFSPSSSNAKESAPAAPASLVARRPDAGDIQAGRQAKSVTPSGVILEAPFTNLSMAALYHPSALPFRLLPFFKHALILSMHERFPSLEYIQQVQQPIIILHGRRDRMIPFHLGEELYHTARLARLRERPETLEDVWFAEFSQAGHSNMYAYPQWTDELHTFMGSVE-GAGNGK 530
The following BLAST results are available for this feature:
BLAST of NO16G01240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24018.11.000e-14156.33Alpha/beta hydrolase fold-1 [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01240NO16G01240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01240.1NO16G01240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01240.1.cds1NO16G01240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01240.1 ID=NO16G01240.1|Name=NO16G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1533bp
ATGCAAGCCACGGCAAAGCCCCGGCCTTTGGTGGCGGCTTCACCTCAAGG
ATGTGCCACTTGTAGTGTCGCCTCATCCTGTGCAGTCGGAGGCTGCGGTG
CTGGAGCCAGCCAGAGGCACAGTAGCTCAGGGCCCTCGTCATCCTCATCC
TGTTCCTCGTCCTGCTCCAGCGCGGCCGCTTCTCCATCCTCCTCGTCTCG
TGCACTCCCGGTGTCACAATCCCAGCAGCTCGCCTGTCGTGATGGCGTAG
ACGCGCCTTGCTCCAACTCATCGGCGCTCAAAGGCCGCGCTCGCGTGCGA
ATGCTTGAGCAGCCAAAAAATAATCAAGAACACCGTCACAAACAAGAGGA
ACGAGACCGGAAAGCTGTCCGACGGATCAGGCACGGACAGAAGAAGAAAC
AACGACGCGCCCACCTCAATCTATCCGCCAAAATCTTAGCGGGAATAGCG
GGGTTCTGGGTCCTGGCAACTACTCTCCTGCTCACCGTCCCTGAGTCCCA
AGGGTTCATGACCTACCTCCACTGGGTCCGCTGGCCCATCTTTCGTGACC
TGACCGACTTGATTTCTTTTCGCTTGCCGCATGCACGAAATATCCGCGTA
AAGACTTCGGACGGTCTTGAGTTGGGGGGATGGCATGTGTTGCCTTCTCA
CAAGATAGCAGTGGAGGCTAGTCGTCTGCCCCCGGGAAGTCGTGCAAGGG
AAGATTTTTTTGACCTGGCATTAGCCAGGCCAAACACACGGGTTGTGATT
TATTTCCACGGGAATGCTGCGACACGAGGGCAATTTAATCGGGTGGAATT
GGTGAAGGCATTGGCAGCCACGATGGAGGCGCATGTGATTGCAATTGATT
ACAGGGGGTTTGGAGACTCGACTGGTTCCCCCTCCGAGGCAGGGTTAGGG
TTGGATGCAAGAGCGGTGTGGACGTGGGTTCAGGAGAAGGTGGGAGGGAA
GGAGGGGGAGGGAGGGCCAGCAAATATTTATTTGTACGGGCATTCCTTAG
GTTCCGGCGTGGCATTGGGCTTGGCTCATTATTTGAGCGAGGAGGCAGAA
GCAGCAGCAGCTGACGACAGCGACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGTAAATGCTCTCTTCCTGTCGTCCCCACGGGCCTTATTCTGGATG
CCCCTTTCACCAACCTGAGTATGGCAGCACTGCATCACCCCTCCGCCCTC
CCCTTCCGTCTTTTGCCTTTCGTTAAGAACGCCTTGCTTCATAGCATGCA
TGAGCGTTTCCCCTCCCTCGATTACATTCAAAAGTTAAATGAACCCATCC
TGATATTGCATGGGCGGAGGGATAGAATGATCCCTTTTTTCTTAGGACAG
GAGTTGTATCACGCTGCACAACTCGCAAGGGTGAGACGTCGTCCGGACTT
ACTCGAGGATTTGTGGTTTTCTGAGTTTCAGGAGGCGGGTCATAATGATG
TGTATGCGCATGGACAGTGGACGAATGACGTGGCGGCGTTCATGTCGACG
ATGGAATTGGGGTTGGGGGAGAGGAAGGAATAG
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protein sequence of NO16G01240.1

>NO16G01240.1-protein ID=NO16G01240.1-protein|Name=NO16G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=511bp
MQATAKPRPLVAASPQGCATCSVASSCAVGGCGAGASQRHSSSGPSSSSS
CSSSCSSAAASPSSSSRALPVSQSQQLACRDGVDAPCSNSSALKGRARVR
MLEQPKNNQEHRHKQEERDRKAVRRIRHGQKKKQRRAHLNLSAKILAGIA
GFWVLATTLLLTVPESQGFMTYLHWVRWPIFRDLTDLISFRLPHARNIRV
KTSDGLELGGWHVLPSHKIAVEASRLPPGSRAREDFFDLALARPNTRVVI
YFHGNAATRGQFNRVELVKALAATMEAHVIAIDYRGFGDSTGSPSEAGLG
LDARAVWTWVQEKVGGKEGEGGPANIYLYGHSLGSGVALGLAHYLSEEAE
AAAADDSDSSSSSSSSSSSKCSLPVVPTGLILDAPFTNLSMAALHHPSAL
PFRLLPFVKNALLHSMHERFPSLDYIQKLNEPILILHGRRDRMIPFFLGQ
ELYHAAQLARVRRRPDLLEDLWFSEFQEAGHNDVYAHGQWTNDVAAFMST
MELGLGERKE*
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mRNA from alignment at chr16:383052..384584+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01240.1 ID=NO16G01240.1|Name=NO16G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1533bp|location=Sequence derived from alignment at chr16:383052..384584+ (Nannochloropsis oceanica)
ATGCAAGCCACGGCAAAGCCCCGGCCTTTGGTGGCGGCTTCACCTCAAGG
ATGTGCCACTTGTAGTGTCGCCTCATCCTGTGCAGTCGGAGGCTGCGGTG
CTGGAGCCAGCCAGAGGCACAGTAGCTCAGGGCCCTCGTCATCCTCATCC
TGTTCCTCGTCCTGCTCCAGCGCGGCCGCTTCTCCATCCTCCTCGTCTCG
TGCACTCCCGGTGTCACAATCCCAGCAGCTCGCCTGTCGTGATGGCGTAG
ACGCGCCTTGCTCCAACTCATCGGCGCTCAAAGGCCGCGCTCGCGTGCGA
ATGCTTGAGCAGCCAAAAAATAATCAAGAACACCGTCACAAACAAGAGGA
ACGAGACCGGAAAGCTGTCCGACGGATCAGGCACGGACAGAAGAAGAAAC
AACGACGCGCCCACCTCAATCTATCCGCCAAAATCTTAGCGGGAATAGCG
GGGTTCTGGGTCCTGGCAACTACTCTCCTGCTCACCGTCCCTGAGTCCCA
AGGGTTCATGACCTACCTCCACTGGGTCCGCTGGCCCATCTTTCGTGACC
TGACCGACTTGATTTCTTTTCGCTTGCCGCATGCACGAAATATCCGCGTA
AAGACTTCGGACGGTCTTGAGTTGGGGGGATGGCATGTGTTGCCTTCTCA
CAAGATAGCAGTGGAGGCTAGTCGTCTGCCCCCGGGAAGTCGTGCAAGGG
AAGATTTTTTTGACCTGGCATTAGCCAGGCCAAACACACGGGTTGTGATT
TATTTCCACGGGAATGCTGCGACACGAGGGCAATTTAATCGGGTGGAATT
GGTGAAGGCATTGGCAGCCACGATGGAGGCGCATGTGATTGCAATTGATT
ACAGGGGGTTTGGAGACTCGACTGGTTCCCCCTCCGAGGCAGGGTTAGGG
TTGGATGCAAGAGCGGTGTGGACGTGGGTTCAGGAGAAGGTGGGAGGGAA
GGAGGGGGAGGGAGGGCCAGCAAATATTTATTTGTACGGGCATTCCTTAG
GTTCCGGCGTGGCATTGGGCTTGGCTCATTATTTGAGCGAGGAGGCAGAA
GCAGCAGCAGCTGACGACAGCGACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGTAAATGCTCTCTTCCTGTCGTCCCCACGGGCCTTATTCTGGATG
CCCCTTTCACCAACCTGAGTATGGCAGCACTGCATCACCCCTCCGCCCTC
CCCTTCCGTCTTTTGCCTTTCGTTAAGAACGCCTTGCTTCATAGCATGCA
TGAGCGTTTCCCCTCCCTCGATTACATTCAAAAGTTAAATGAACCCATCC
TGATATTGCATGGGCGGAGGGATAGAATGATCCCTTTTTTCTTAGGACAG
GAGTTGTATCACGCTGCACAACTCGCAAGGGTGAGACGTCGTCCGGACTT
ACTCGAGGATTTGTGGTTTTCTGAGTTTCAGGAGGCGGGTCATAATGATG
TGTATGCGCATGGACAGTGGACGAATGACGTGGCGGCGTTCATGTCGACG
ATGGAATTGGGGTTGGGGGAGAGGAAGGAATAG
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Coding sequence (CDS) from alignment at chr16:383052..384584+

>NO16G01240.1 ID=NO16G01240.1|Name=NO16G01240.1|organism=Nannochloropsis oceanica|type=CDS|length=1533bp|location=Sequence derived from alignment at chr16:383052..384584+ (Nannochloropsis oceanica)
ATGCAAGCCACGGCAAAGCCCCGGCCTTTGGTGGCGGCTTCACCTCAAGG
ATGTGCCACTTGTAGTGTCGCCTCATCCTGTGCAGTCGGAGGCTGCGGTG
CTGGAGCCAGCCAGAGGCACAGTAGCTCAGGGCCCTCGTCATCCTCATCC
TGTTCCTCGTCCTGCTCCAGCGCGGCCGCTTCTCCATCCTCCTCGTCTCG
TGCACTCCCGGTGTCACAATCCCAGCAGCTCGCCTGTCGTGATGGCGTAG
ACGCGCCTTGCTCCAACTCATCGGCGCTCAAAGGCCGCGCTCGCGTGCGA
ATGCTTGAGCAGCCAAAAAATAATCAAGAACACCGTCACAAACAAGAGGA
ACGAGACCGGAAAGCTGTCCGACGGATCAGGCACGGACAGAAGAAGAAAC
AACGACGCGCCCACCTCAATCTATCCGCCAAAATCTTAGCGGGAATAGCG
GGGTTCTGGGTCCTGGCAACTACTCTCCTGCTCACCGTCCCTGAGTCCCA
AGGGTTCATGACCTACCTCCACTGGGTCCGCTGGCCCATCTTTCGTGACC
TGACCGACTTGATTTCTTTTCGCTTGCCGCATGCACGAAATATCCGCGTA
AAGACTTCGGACGGTCTTGAGTTGGGGGGATGGCATGTGTTGCCTTCTCA
CAAGATAGCAGTGGAGGCTAGTCGTCTGCCCCCGGGAAGTCGTGCAAGGG
AAGATTTTTTTGACCTGGCATTAGCCAGGCCAAACACACGGGTTGTGATT
TATTTCCACGGGAATGCTGCGACACGAGGGCAATTTAATCGGGTGGAATT
GGTGAAGGCATTGGCAGCCACGATGGAGGCGCATGTGATTGCAATTGATT
ACAGGGGGTTTGGAGACTCGACTGGTTCCCCCTCCGAGGCAGGGTTAGGG
TTGGATGCAAGAGCGGTGTGGACGTGGGTTCAGGAGAAGGTGGGAGGGAA
GGAGGGGGAGGGAGGGCCAGCAAATATTTATTTGTACGGGCATTCCTTAG
GTTCCGGCGTGGCATTGGGCTTGGCTCATTATTTGAGCGAGGAGGCAGAA
GCAGCAGCAGCTGACGACAGCGACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGTAAATGCTCTCTTCCTGTCGTCCCCACGGGCCTTATTCTGGATG
CCCCTTTCACCAACCTGAGTATGGCAGCACTGCATCACCCCTCCGCCCTC
CCCTTCCGTCTTTTGCCTTTCGTTAAGAACGCCTTGCTTCATAGCATGCA
TGAGCGTTTCCCCTCCCTCGATTACATTCAAAAGTTAAATGAACCCATCC
TGATATTGCATGGGCGGAGGGATAGAATGATCCCTTTTTTCTTAGGACAG
GAGTTGTATCACGCTGCACAACTCGCAAGGGTGAGACGTCGTCCGGACTT
ACTCGAGGATTTGTGGTTTTCTGAGTTTCAGGAGGCGGGTCATAATGATG
TGTATGCGCATGGACAGTGGACGAATGACGTGGCGGCGTTCATGTCGACG
ATGGAATTGGGGTTGGGGGAGAGGAAGGAATAG
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Synonyms
Publications