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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr16 | genome | chr16:315796..317759 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO16G00980.2 vs.
Match: EWM24006.1 (protein of unknown function DUF1084 [Nannochloropsis gaditana]) HSP 1 Score: 336.3 bits (861), Expect = 1.200e-88 Identity = 213/314 (67.83%), Postives = 233/314 (74.20%), Query Frame = 0
Query: 35 QALLILFNLPDFVFVSAYVLLALVWAETFIQSRSHWLSVKQFRRMWLLSYLIFNACLYLGQLVLYTLLFLPRGNQEFLSKIIFLTLCVINFSLPIILLLLFFYLSIMFAGFPYKSRGAPARLNQISKVMVWWTIGRIIWGILVLTTILQGWLSNAYRDRQVYGVVLVGLFIITEWIPFFVSMDVSLLASLSAERGRGGEGR----EGGEVGTYGTLLVPDLEEDEDEERGREGRGGITEKSRRSDGDRNEMENDEVEEEEGGKEDVEEGRADRMRNSAAGTSPFAKGERGGGGDEGGGGGEGGGERG---GKGG 342
+ALLILFNLPDFVFVSAYVLLALVWAE FIQSRSHWLS+KQFRRMWLLSYL+FNACLYLGQLVLYTLLFLP GNQ+FLSKIIFLTLCVINFSLPIILLLLFFYLSIMFAGFPYKSR APA+LN+ISKVM WWTIGRIIWGI+VLT+ILQGWLS+A++DRQVY VVLVGLF+ITE IPFFV+MDVSLLASLS G EGR EGGE GTYG LLVP + EGRG E++ D + + E GG V+EG D G RG G GGG GG+ KGG
Sbjct: 101 KALLILFNLPDFVFVSAYVLLALVWAEAFIQSRSHWLSIKQFRRMWLLSYLVFNACLYLGQLVLYTLLFLPHGNQDFLSKIIFLTLCVINFSLPIILLLLFFYLSIMFAGFPYKSRRAPAKLNKISKVMAWWTIGRIIWGIVVLTSILQGWLSDAHKDRQVYSVVLVGLFLITELIPFFVAMDVSLLASLSTASAVGEEGREGGGEGGEGGTYGALLVPATLSEV------EGRG---EEAAEEDTKEAWKRENGIGEGVGGPRSVKEGEEDE-----------EMGRRGPAQATGRGGGGKGGDGAVLESKGG 394
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO16G00980.2 ID=NO16G00980.2|Name=NO16G00980.2|organism=Nannochloropsis oceanica|type=mRNA|length=1773bp
CAGGTAAAAAGCCAACCCAAGCGGCGCAAGGGCCGTCGTCGTGCGCTGCT
GCCTCCTCTCCTACTCCTACCCCCTAGGCCGCCTGCCCAGGGATAACCAT
GCTCATCCTCGATGGCTTGGGCGCCACACCCTTTATCCTCGCCATCCTTT
ATCTTGCGACGACTTTCCTCATCGCCTCCCGTCTCCGCAACCTCCATGCG
CGCCATCGCGACATGAACACAACCAAGCTCTTCGTCTTGTCCGTTCTACT
AAGCTGCACCATGCGCTGCCTGAGCTTCATTGCCCTGGGGGCATTTTCCG
TCCAGTCTATAGCCATCGACAACAACAGTAGCGGCGGTTCATCCCCGTTA
CAATCTTCCTCATCTTTTGATTCGCAGGATCCCGATACCCAGTTTTACGA
AAAGGTAAGGGGTAGCTTGAGGAACCTTTCCCTCTCTCTTTCCTCTCATG
CTACGCGACTGCACGACCTTCCTCCATTGCCATTGCGTGTCATTTCAGCC
TTTGTATTGCCCTCATTATTTTCTTCCTTCATATCCCTTTCCTCTCGCCC
AGGCCCTCCTCATCCTCTTCAACCTCCCCGACTTTGTCTTCGTGTCTGCG
TACGTCCTCCTCGCCCTTGTCTGGGCCGAGACCTTTATCCAATCACGATC
GCACTGGCTGTCTGTCAAGCAATTTCGCCGCATGTGGCTGCTGTCCTACC
TCATCTTCAACGCGTGCCTGTACCTCGGTCAACTCGTGCTGTACACTCTC
CTCTTCCTCCCCAGGGGGAACCAAGAATTCCTCAGCAAGATCATTTTCTT
GACCTTGTGTGTCATTAACTTCTCCCTGCCCATTATCTTGCTCCTGCTCT
TTTTTTACCTGTCCATTATGTTCGCGGGCTTTCCCTATAAGAGTAGGGGG
GCCCCGGCGAGACTGAATCAGATCAGTAAGGTGATGGTTTGGTGGACCAT
TGGTCGCATTATTTGGGGTATTCTCGTCCTCACCACCATCTTACAAGGCT
GGTTGAGCAACGCCTACCGAGACCGGCAGGTGTACGGCGTGGTGTTGGTC
GGCTTGTTTATAATCACGGAATGGATTCCGTTTTTCGTGTCGATGGATGT
GTCGTTGCTGGCGTCGTTGTCAGCCGAGAGGGGGAGGGGAGGGGAAGGGA
GGGAGGGAGGAGAGGTGGGGACGTATGGGACATTATTGGTGCCGGATTTG
GAGGAGGACGAGGACGAGGAAAGAGGGAGGGAGGGGAGGGGTGGGATTAC
TGAGAAAAGCAGGCGCAGTGATGGGGATAGGAATGAGATGGAGAATGATG
AGGTCGAGGAAGAGGAGGGAGGGAAGGAGGACGTGGAGGAGGGAAGGGCG
GACAGGATGCGGAATTCAGCAGCGGGAACCAGCCCCTTCGCAAAAGGAGA
ACGAGGAGGAGGAGGGGATGAAGGAGGAGGAGGAGGAGAAGGAGGAGGAG
AAAGAGGAGGAAAAGGAGGAGGAGAAAGAGGAGGAGGAGGAGGAGGAGGA
TTTTTGCTCTACCCCTCCTCGGTCAAGACATGATTTACGAGCAAGGGAGT
GTGAGTGTGCGTGTATTTGAATGCCTGCATGCAGGAGAATTAGGCGAAGG
GTTAGCCACAGTGTAATGTAAATTGATACAAGTAAAAGACGAAAAAGGAG
ATGAGGAGGCGTGCTTGTCGGCAGTGCTCCGACCTGAAGGTCGCGGCGCA
GACTGGCAGAAAGCCAGAGTTAATAAAGTAATGCCCTCCTCCCGTCAAAT
AAAAGAAATCAAGCAACACCATA back to topprotein sequence of NO16G00980.2 >NO16G00980.2-protein ID=NO16G00980.2-protein|Name=NO16G00980.2|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MLRDCTTFLHCHCVSFQPLYCPHYFLPSYPFPLAQALLILFNLPDFVFVS
AYVLLALVWAETFIQSRSHWLSVKQFRRMWLLSYLIFNACLYLGQLVLYT
LLFLPRGNQEFLSKIIFLTLCVINFSLPIILLLLFFYLSIMFAGFPYKSR
GAPARLNQISKVMVWWTIGRIIWGILVLTTILQGWLSNAYRDRQVYGVVL
VGLFIITEWIPFFVSMDVSLLASLSAERGRGGEGREGGEVGTYGTLLVPD
LEEDEDEERGREGRGGITEKSRRSDGDRNEMENDEVEEEEGGKEDVEEGR
ADRMRNSAAGTSPFAKGERGGGGDEGGGGGEGGGERGGKGGGERGGGGGG
GFLLYPSSVKT* back to topmRNA from alignment at chr16:315796..317759- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO16G00980.2 ID=NO16G00980.2|Name=NO16G00980.2|organism=Nannochloropsis oceanica|type=mRNA|length=1964bp|location=Sequence derived from alignment at chr16:315796..317759- (Nannochloropsis oceanica)
CAGGTAAAAAGCCAACCCAAGCGGCGCAAGGGCCGTCGTCGTGCGCTGCT
GCCTCCTCTCCTACTCCTACCCCCTAGGCCGCCTGCCCAGGGATAACCAT
GCTCATCCTCGATGGCTTGGGCGCCACACCCTTTATCCTCGCCATCCTTT
ATCTTGCGACGACTTTCCTCATCGCCTCCCGTCTCCGCAACCTCCATGCG
CGCCATCGCGACATGAACACAACCAAGCTCTTCGTCTTGTCCGTTCTACT
AAGCTGCACCATGCGCTGCCTGAGCTTCATTGCCCTGGGGGCATTTTCCG
TCCAGTCTATAGCCATCGACAACAACAGTAGCGGCGGTTCATCCCCGTTA
CAATCTTCCTCATCTTTTGATTCGCAGGATCCCGATACCCAGTTTTACGA
AAAGGTAAGGGGTAGCTTGAGGAACCTTTCCCTCTCTCTTTCCTCTCATG
CTACGCGACTGCACGACCTTCCTCCATTGCCATTGCGTGTCATTTCAGCC
TTTGTATTGCCCTCATTATTTTCTTCCTTCATATCCCTTTCCTCTCGCCC
AGGCCCTCCTCATCCTCTTCAACCTCCCCGACTTTGTCTTCGTGTCTGCG
TACGTCCTCCTCGCCCTTGTCTGGGCCGAGACCTTTATCCAATCACGATC
GCACTGGCTGTCTGTCAAGCAATTTCGCCGCATGTGGCTGCTGTCCTACC
TCATCTTCAACGCGTGCCTGTACCTCGGTCAACTCGTGCTGTACACTCTC
CTCTTCCTCCCCAGGGGGAACCAAGAATTCCTCAGCAAGATCATTTTCTT
GACCTTGTGTGTCATTAACTTCTCCCTGCCCATTATCTTGCTCCTGCTCT
TTTTTTACCTGTCCATTATGTTCGCGGGCTTTCCCTATAAGAGTAGGGGG
GCCCCGGCGAGACTGAATCAGATCAGTAAGGTAGGTCTTGGAGAGGTAGG
GAGGGAAAGAGGAAGGGAGGAACGAGTCGGATGCAGGAGTCCTTCGGATT
TGCTGTATGTGTGTGTGAAGTTTTGAATGTATCTCCGTGCAGCATTTGCA
AGGGCCTCGTCGTCCACCCTCCTTCCCTCCCTTCCTCCTCCCCTTCCTCC
CTCCCTCCCTCTACCTCCCAGGTGATGGTTTGGTGGACCATTGGTCGCAT
TATTTGGGGTATTCTCGTCCTCACCACCATCTTACAAGGCTGGTTGAGCA
ACGCCTACCGAGACCGGCAGGTGTACGGCGTGGTGTTGGTCGGCTTGTTT
ATAATCACGGAATGGATTCCGTTTTTCGTGTCGATGGATGTGTCGTTGCT
GGCGTCGTTGTCAGCCGAGAGGGGGAGGGGAGGGGAAGGGAGGGAGGGAG
GAGAGGTGGGGACGTATGGGACATTATTGGTGCCGGATTTGGAGGAGGAC
GAGGACGAGGAAAGAGGGAGGGAGGGGAGGGGTGGGATTACTGAGAAAAG
CAGGCGCAGTGATGGGGATAGGAATGAGATGGAGAATGATGAGGTCGAGG
AAGAGGAGGGAGGGAAGGAGGACGTGGAGGAGGGAAGGGCGGACAGGATG
CGGAATTCAGCAGCGGGAACCAGCCCCTTCGCAAAAGGAGAACGAGGAGG
AGGAGGGGATGAAGGAGGAGGAGGAGGAGAAGGAGGAGGAGAAAGAGGAG
GAAAAGGAGGAGGAGAAAGAGGAGGAGGAGGAGGAGGAGGATTTTTGCTC
TACCCCTCCTCGGTCAAGACATGATTTACGAGCAAGGGAGTGTGAGTGTG
CGTGTATTTGAATGCCTGCATGCAGGAGAATTAGGCGAAGGGTTAGCCAC
AGTGTAATGTAAATTGATACAAGTAAAAGACGAAAAAGGAGATGAGGAGG
CGTGCTTGTCGGCAGTGCTCCGACCTGAAGGTCGCGGCGCAGACTGGCAG
AAAGCCAGAGTTAATAAAGTAATGCCCTCCTCCCGTCAAATAAAAGAAAT
CAAGCAACACCATA back to topCoding sequence (CDS) from alignment at chr16:315796..317759- >NO16G00980.2 ID=NO16G00980.2|Name=NO16G00980.2|organism=Nannochloropsis oceanica|type=CDS|length=1086bp|location=Sequence derived from alignment at chr16:315796..317759- (Nannochloropsis oceanica)
ATGCTACGCGACTGCACGACCTTCCTCCATTGCCATTGCGTGTCATTTCA
GCCTTTGTATTGCCCTCATTATTTTCTTCCTTCATATCCCTTTCCTCTCG
CCCAGGCCCTCCTCATCCTCTTCAACCTCCCCGACTTTGTCTTCGTGTCT
GCGTACGTCCTCCTCGCCCTTGTCTGGGCCGAGACCTTTATCCAATCACG
ATCGCACTGGCTGTCTGTCAAGCAATTTCGCCGCATGTGGCTGCTGTCCT
ACCTCATCTTCAACGCGTGCCTGTACCTCGGTCAACTCGTGCTGTACACT
CTCCTCTTCCTCCCCAGGGGGAACCAAGAATTCCTCAGCAAGATCATTTT
CTTGACCTTGTGTGTCATTAACTTCTCCCTGCCCATTATCTTGCTCCTGC
TCTTTTTTTACCTGTCCATTATGTTCGCGGGCTTTCCCTATAAGAGTAGG
GGGGCCCCGGCGAGACTGAATCAGATCAGTAAGGTGATGGTTTGGTGGAC
CATTGGTCGCATTATTTGGGGTATTCTCGTCCTCACCACCATCTTACAAG
GCTGGTTGAGCAACGCCTACCGAGACCGGCAGGTGTACGGCGTGGTGTTG
GTCGGCTTGTTTATAATCACGGAATGGATTCCGTTTTTCGTGTCGATGGA
TGTGTCGTTGCTGGCGTCGTTGTCAGCCGAGAGGGGGAGGGGAGGGGAAG
GGAGGGAGGGAGGAGAGGTGGGGACGTATGGGACATTATTGGTGCCGGAT
TTGGAGGAGGACGAGGACGAGGAAAGAGGGAGGGAGGGGAGGGGTGGGAT
TACTGAGAAAAGCAGGCGCAGTGATGGGGATAGGAATGAGATGGAGAATG
ATGAGGTCGAGGAAGAGGAGGGAGGGAAGGAGGACGTGGAGGAGGGAAGG
GCGGACAGGATGCGGAATTCAGCAGCGGGAACCAGCCCCTTCGCAAAAGG
AGAACGAGGAGGAGGAGGGGATGAAGGAGGAGGAGGAGGAGAAGGAGGAG
GAGAAAGAGGAGGAAAAGGAGGAGGAGAAAGAGGAGGAGGAGGAGGAGGA
GGATTTTTGCTCTACCCCTCCTCGGTCAAGACATGA back to top
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