NO16G00980.1, NO16G00980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00980.1
Unique NameNO16G00980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1625
Alignment locationchr16:315796..317759 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:315796..317759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00980.1 vs.
Match: EWM24006.1 (protein of unknown function DUF1084 [Nannochloropsis gaditana])

HSP 1 Score: 478.4 bits (1230), Expect = 2.300e-131
Identity = 298/416 (71.63%), Postives = 323/416 (77.64%), Query Frame = 0 
Query:    1 MLILDGLGATPFILAILYLATTFLIASRLRNLHARHRDMNTTKLFVLSVLLSCTMRCLSFIALGAFSVQSIAIDNNSSG-GSSPLQSSSSFDSQDPDTQFYEKALLILFNLPDFVFVSAYVLLALVWAETFIQSRSHWLSVKQFRRMWLLSYLIFNACLYLGQLVLYTLLFLPRGNQEFLSKIIFLTLCVINFSLPIILLLLFFYLSIMFAGFPYKSRGAPARLNQISKVMVWWTIGRIIWGILVLTTILQGWLSNAYRDRQVYGVVLVGLFIITEWIPFFVSMDVSLLASLSAERGRGGEGR----EGGEVGTYGTLLVPDLEEDEDEERGREGRGGITEKSRRSDGDRNEMENDEVEEEEGGKEDVEEGRADRMRNSAAGTSPFAKGERGGGGDEGGGGGEGGGERG---GKGG 409
            MLILDGLG TPFILA+LYLATT LI+SRLRNLH RH +MNTTKLFVLSVLLSC MRCLSFIALGAFSVQSIAIDN++SG  SSP  S SS  +QDPDTQFYEKALLILFNLPDFVFVSAYVLLALVWAE FIQSRSHWLS+KQFRRMWLLSYL+FNACLYLGQLVLYTLLFLP GNQ+FLSKIIFLTLCVINFSLPIILLLLFFYLSIMFAGFPYKSR APA+LN+ISKVM WWTIGRIIWGI+VLT+ILQGWLS+A++DRQVY VVLVGLF+ITE IPFFV+MDVSLLASLS     G EGR    EGGE GTYG LLVP    +       EGRG   E++   D        + + E  GG   V+EG  D              G RG     G GGG  GG+      KGG
Sbjct:    1 MLILDGLGVTPFILALLYLATTALISSRLRNLHTRHPEMNTTKLFVLSVLLSCGMRCLSFIALGAFSVQSIAIDNDASGRASSPSSSWSS--TQDPDTQFYEKALLILFNLPDFVFVSAYVLLALVWAEAFIQSRSHWLSIKQFRRMWLLSYLVFNACLYLGQLVLYTLLFLPHGNQDFLSKIIFLTLCVINFSLPIILLLLFFYLSIMFAGFPYKSRRAPAKLNKISKVMAWWTIGRIIWGIVVLTSILQGWLSDAHKDRQVYSVVLVGLFLITELIPFFVAMDVSLLASLSTASAVGEEGREGGGEGGEGGTYGALLVPATLSEV------EGRG---EEAAEEDTKEAWKRENGIGEGVGGPRSVKEGEEDE-----------EMGRRGPAQATGRGGGGKGGDGAVLESKGG 394
The following BLAST results are available for this feature:
BLAST of NO16G00980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24006.12.300e-13171.63protein of unknown function DUF1084 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00980NO16G00980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00980.1NO16G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00980.1.cds1NO16G00980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00980.1.cds2NO16G00980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00980.1.cds3NO16G00980.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00980.1 ID=NO16G00980.1|Name=NO16G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1625bp
CAGGTAAAAAGCCAACCCAAGCGGCGCAAGGGCCGTCGTCGTGCGCTGCT
GCCTCCTCTCCTACTCCTACCCCCTAGGCCGCCTGCCCAGGGATAACCAT
GCTCATCCTCGATGGCTTGGGCGCCACACCCTTTATCCTCGCCATCCTTT
ATCTTGCGACGACTTTCCTCATCGCCTCCCGTCTCCGCAACCTCCATGCG
CGCCATCGCGACATGAACACAACCAAGCTCTTCGTCTTGTCCGTTCTACT
AAGCTGCACCATGCGCTGCCTGAGCTTCATTGCCCTGGGGGCATTTTCCG
TCCAGTCTATAGCCATCGACAACAACAGTAGCGGCGGTTCATCCCCGTTA
CAATCTTCCTCATCTTTTGATTCGCAGGATCCCGATACCCAGTTTTACGA
AAAGGCCCTCCTCATCCTCTTCAACCTCCCCGACTTTGTCTTCGTGTCTG
CGTACGTCCTCCTCGCCCTTGTCTGGGCCGAGACCTTTATCCAATCACGA
TCGCACTGGCTGTCTGTCAAGCAATTTCGCCGCATGTGGCTGCTGTCCTA
CCTCATCTTCAACGCGTGCCTGTACCTCGGTCAACTCGTGCTGTACACTC
TCCTCTTCCTCCCCAGGGGGAACCAAGAATTCCTCAGCAAGATCATTTTC
TTGACCTTGTGTGTCATTAACTTCTCCCTGCCCATTATCTTGCTCCTGCT
CTTTTTTTACCTGTCCATTATGTTCGCGGGCTTTCCCTATAAGAGTAGGG
GGGCCCCGGCGAGACTGAATCAGATCAGTAAGGTGATGGTTTGGTGGACC
ATTGGTCGCATTATTTGGGGTATTCTCGTCCTCACCACCATCTTACAAGG
CTGGTTGAGCAACGCCTACCGAGACCGGCAGGTGTACGGCGTGGTGTTGG
TCGGCTTGTTTATAATCACGGAATGGATTCCGTTTTTCGTGTCGATGGAT
GTGTCGTTGCTGGCGTCGTTGTCAGCCGAGAGGGGGAGGGGAGGGGAAGG
GAGGGAGGGAGGAGAGGTGGGGACGTATGGGACATTATTGGTGCCGGATT
TGGAGGAGGACGAGGACGAGGAAAGAGGGAGGGAGGGGAGGGGTGGGATT
ACTGAGAAAAGCAGGCGCAGTGATGGGGATAGGAATGAGATGGAGAATGA
TGAGGTCGAGGAAGAGGAGGGAGGGAAGGAGGACGTGGAGGAGGGAAGGG
CGGACAGGATGCGGAATTCAGCAGCGGGAACCAGCCCCTTCGCAAAAGGA
GAACGAGGAGGAGGAGGGGATGAAGGAGGAGGAGGAGGAGAAGGAGGAGG
AGAAAGAGGAGGAAAAGGAGGAGGAGAAAGAGGAGGAGGAGGAGGAGGAG
GATTTTTGCTCTACCCCTCCTCGGTCAAGACATGATTTACGAGCAAGGGA
GTGTGAGTGTGCGTGTATTTGAATGCCTGCATGCAGGAGAATTAGGCGAA
GGGTTAGCCACAGTGTAATGTAAATTGATACAAGTAAAAGACGAAAAAGG
AGATGAGGAGGCGTGCTTGTCGGCAGTGCTCCGACCTGAAGGTCGCGGCG
CAGACTGGCAGAAAGCCAGAGTTAATAAAGTAATGCCCTCCTCCCGTCAA
ATAAAAGAAATCAAGCAACACCATA
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protein sequence of NO16G00980.1

>NO16G00980.1-protein ID=NO16G00980.1-protein|Name=NO16G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MLILDGLGATPFILAILYLATTFLIASRLRNLHARHRDMNTTKLFVLSVL
LSCTMRCLSFIALGAFSVQSIAIDNNSSGGSSPLQSSSSFDSQDPDTQFY
EKALLILFNLPDFVFVSAYVLLALVWAETFIQSRSHWLSVKQFRRMWLLS
YLIFNACLYLGQLVLYTLLFLPRGNQEFLSKIIFLTLCVINFSLPIILLL
LFFYLSIMFAGFPYKSRGAPARLNQISKVMVWWTIGRIIWGILVLTTILQ
GWLSNAYRDRQVYGVVLVGLFIITEWIPFFVSMDVSLLASLSAERGRGGE
GREGGEVGTYGTLLVPDLEEDEDEERGREGRGGITEKSRRSDGDRNEMEN
DEVEEEEGGKEDVEEGRADRMRNSAAGTSPFAKGERGGGGDEGGGGGEGG
GERGGKGGGERGGGGGGGFLLYPSSVKT*
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mRNA from alignment at chr16:315796..317759-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00980.1 ID=NO16G00980.1|Name=NO16G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1964bp|location=Sequence derived from alignment at chr16:315796..317759- (Nannochloropsis oceanica)
CAGGTAAAAAGCCAACCCAAGCGGCGCAAGGGCCGTCGTCGTGCGCTGCT
GCCTCCTCTCCTACTCCTACCCCCTAGGCCGCCTGCCCAGGGATAACCAT
GCTCATCCTCGATGGCTTGGGCGCCACACCCTTTATCCTCGCCATCCTTT
ATCTTGCGACGACTTTCCTCATCGCCTCCCGTCTCCGCAACCTCCATGCG
CGCCATCGCGACATGAACACAACCAAGCTCTTCGTCTTGTCCGTTCTACT
AAGCTGCACCATGCGCTGCCTGAGCTTCATTGCCCTGGGGGCATTTTCCG
TCCAGTCTATAGCCATCGACAACAACAGTAGCGGCGGTTCATCCCCGTTA
CAATCTTCCTCATCTTTTGATTCGCAGGATCCCGATACCCAGTTTTACGA
AAAGGTAAGGGGTAGCTTGAGGAACCTTTCCCTCTCTCTTTCCTCTCATG
CTACGCGACTGCACGACCTTCCTCCATTGCCATTGCGTGTCATTTCAGCC
TTTGTATTGCCCTCATTATTTTCTTCCTTCATATCCCTTTCCTCTCGCCC
AGGCCCTCCTCATCCTCTTCAACCTCCCCGACTTTGTCTTCGTGTCTGCG
TACGTCCTCCTCGCCCTTGTCTGGGCCGAGACCTTTATCCAATCACGATC
GCACTGGCTGTCTGTCAAGCAATTTCGCCGCATGTGGCTGCTGTCCTACC
TCATCTTCAACGCGTGCCTGTACCTCGGTCAACTCGTGCTGTACACTCTC
CTCTTCCTCCCCAGGGGGAACCAAGAATTCCTCAGCAAGATCATTTTCTT
GACCTTGTGTGTCATTAACTTCTCCCTGCCCATTATCTTGCTCCTGCTCT
TTTTTTACCTGTCCATTATGTTCGCGGGCTTTCCCTATAAGAGTAGGGGG
GCCCCGGCGAGACTGAATCAGATCAGTAAGGTAGGTCTTGGAGAGGTAGG
GAGGGAAAGAGGAAGGGAGGAACGAGTCGGATGCAGGAGTCCTTCGGATT
TGCTGTATGTGTGTGTGAAGTTTTGAATGTATCTCCGTGCAGCATTTGCA
AGGGCCTCGTCGTCCACCCTCCTTCCCTCCCTTCCTCCTCCCCTTCCTCC
CTCCCTCCCTCTACCTCCCAGGTGATGGTTTGGTGGACCATTGGTCGCAT
TATTTGGGGTATTCTCGTCCTCACCACCATCTTACAAGGCTGGTTGAGCA
ACGCCTACCGAGACCGGCAGGTGTACGGCGTGGTGTTGGTCGGCTTGTTT
ATAATCACGGAATGGATTCCGTTTTTCGTGTCGATGGATGTGTCGTTGCT
GGCGTCGTTGTCAGCCGAGAGGGGGAGGGGAGGGGAAGGGAGGGAGGGAG
GAGAGGTGGGGACGTATGGGACATTATTGGTGCCGGATTTGGAGGAGGAC
GAGGACGAGGAAAGAGGGAGGGAGGGGAGGGGTGGGATTACTGAGAAAAG
CAGGCGCAGTGATGGGGATAGGAATGAGATGGAGAATGATGAGGTCGAGG
AAGAGGAGGGAGGGAAGGAGGACGTGGAGGAGGGAAGGGCGGACAGGATG
CGGAATTCAGCAGCGGGAACCAGCCCCTTCGCAAAAGGAGAACGAGGAGG
AGGAGGGGATGAAGGAGGAGGAGGAGGAGAAGGAGGAGGAGAAAGAGGAG
GAAAAGGAGGAGGAGAAAGAGGAGGAGGAGGAGGAGGAGGATTTTTGCTC
TACCCCTCCTCGGTCAAGACATGATTTACGAGCAAGGGAGTGTGAGTGTG
CGTGTATTTGAATGCCTGCATGCAGGAGAATTAGGCGAAGGGTTAGCCAC
AGTGTAATGTAAATTGATACAAGTAAAAGACGAAAAAGGAGATGAGGAGG
CGTGCTTGTCGGCAGTGCTCCGACCTGAAGGTCGCGGCGCAGACTGGCAG
AAAGCCAGAGTTAATAAAGTAATGCCCTCCTCCCGTCAAATAAAAGAAAT
CAAGCAACACCATA
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Coding sequence (CDS) from alignment at chr16:315796..317759-

>NO16G00980.1 ID=NO16G00980.1|Name=NO16G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=1287bp|location=Sequence derived from alignment at chr16:315796..317759- (Nannochloropsis oceanica)
ATGCTCATCCTCGATGGCTTGGGCGCCACACCCTTTATCCTCGCCATCCT
TTATCTTGCGACGACTTTCCTCATCGCCTCCCGTCTCCGCAACCTCCATG
CGCGCCATCGCGACATGAACACAACCAAGCTCTTCGTCTTGTCCGTTCTA
CTAAGCTGCACCATGCGCTGCCTGAGCTTCATTGCCCTGGGGGCATTTTC
CGTCCAGTCTATAGCCATCGACAACAACAGTAGCGGCGGTTCATCCCCGT
TACAATCTTCCTCATCTTTTGATTCGCAGGATCCCGATACCCAGTTTTAC
GAAAAGGCCCTCCTCATCCTCTTCAACCTCCCCGACTTTGTCTTCGTGTC
TGCGTACGTCCTCCTCGCCCTTGTCTGGGCCGAGACCTTTATCCAATCAC
GATCGCACTGGCTGTCTGTCAAGCAATTTCGCCGCATGTGGCTGCTGTCC
TACCTCATCTTCAACGCGTGCCTGTACCTCGGTCAACTCGTGCTGTACAC
TCTCCTCTTCCTCCCCAGGGGGAACCAAGAATTCCTCAGCAAGATCATTT
TCTTGACCTTGTGTGTCATTAACTTCTCCCTGCCCATTATCTTGCTCCTG
CTCTTTTTTTACCTGTCCATTATGTTCGCGGGCTTTCCCTATAAGAGTAG
GGGGGCCCCGGCGAGACTGAATCAGATCAGTAAGGTGATGGTTTGGTGGA
CCATTGGTCGCATTATTTGGGGTATTCTCGTCCTCACCACCATCTTACAA
GGCTGGTTGAGCAACGCCTACCGAGACCGGCAGGTGTACGGCGTGGTGTT
GGTCGGCTTGTTTATAATCACGGAATGGATTCCGTTTTTCGTGTCGATGG
ATGTGTCGTTGCTGGCGTCGTTGTCAGCCGAGAGGGGGAGGGGAGGGGAA
GGGAGGGAGGGAGGAGAGGTGGGGACGTATGGGACATTATTGGTGCCGGA
TTTGGAGGAGGACGAGGACGAGGAAAGAGGGAGGGAGGGGAGGGGTGGGA
TTACTGAGAAAAGCAGGCGCAGTGATGGGGATAGGAATGAGATGGAGAAT
GATGAGGTCGAGGAAGAGGAGGGAGGGAAGGAGGACGTGGAGGAGGGAAG
GGCGGACAGGATGCGGAATTCAGCAGCGGGAACCAGCCCCTTCGCAAAAG
GAGAACGAGGAGGAGGAGGGGATGAAGGAGGAGGAGGAGGAGAAGGAGGA
GGAGAAAGAGGAGGAAAAGGAGGAGGAGAAAGAGGAGGAGGAGGAGGAGG
AGGATTTTTGCTCTACCCCTCCTCGGTCAAGACATGA
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Synonyms
Publications