NO16G00950.1, NO16G00950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00950.1
Unique NameNO16G00950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1857
Alignment locationchr16:306611..308811 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:306611..308811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00950.1 vs.
Match: EWM24029.1 (Acyl transferase/acyl hydrolase/lysophospholipase [Nannochloropsis gaditana])

HSP 1 Score: 801.2 bits (2068), Expect = 2.300e-228
Identity = 435/605 (71.90%), Postives = 489/605 (80.83%), Query Frame = 0 
Query:    1 MLASFPPLVSSSIAPPRTRFMFLKKIRFRPTIRRFRSIKFSRRVSRTPASSPFDQDEESAVASLVLQQQQHLHHSQQQPHQRRRRRFGTFERQRLSQPSELSSSFPSSSSTPPTTTISEGRLLEIPLLRLPTLQAPPLPLPTSLPSSPPSPSPTTRQVIERYQDLHQAFDAFTDKENLKNKARRRAFTRLSVVGKTAESMQEHPVLKILHDRVRSGSQPGERQDGYKIGLAIEGGGMRGAVSAGAAAATNLLGLSDAFDAVYGSSAGALIAAFFVSRQLNGTIIYSDILPAAGKRFLDRTQLIPAMGLLPGLEARPVLNLQFLEKVVRETVRLDWAEFWKNNQKQPLNIVASSLDGMESLALTSERGDWSCFEGLMQCLKSSMCVPGVAGPPIRLNVTCRVTGEKKEGAFADALVFEPIPLKSAVEDGCTHIVTLRTRPDGSEVLGHKVTGIYERFIARRFLAEKHSFGAAASHMTRFDHLKQYAADLLLLNEGSHAKAGREEGVYVPDGKGGGRVVHLLPVAPPLGTTEVDTLDSSREALRRGLKDGFAAAWNLMAPPELVEAHSGERVAKELFDCEDVEGFNSTFERFSTTFGGG-GRGEGKG 605
            M++S  PLV SS+AP R RF FLK++R RPTIRR R I FSR V+R PASSPF++D+E+     +    + L H+QQ PH+RRR       RQ++S+ S              T T++EGR+ ++PLLRLP L   P PLP   P S P P P+ RQVIE Y D HQAF++F++KE    KARRRA +RLSVVGKTAE ++EHPVL++LH RVRS SQPG+R D YKIGLAIEGGGMRGAVSAGAAAA NLLGLSD FDAVYGSSAGALIAAFFVS QLNGTIIYSD+LPAAGKRFLDR QLIPAMGLLPG+EA+PVLNLQFLE V+R TVRLDWA FW  N  QPLN+VASSLDGMESLAL S++GD+  FE L+QCLKSSMCVPGVAGPP+ LNVTCR TGE+KE AFADALVFEPIPLKSAVEDGCTHIVTLRTRPDGSEVLGHKVTGIYERFIARRFLA+ H F  AA HMT+FDHL+QYAADLLLLNEGSHAKA    GV+VPDGKGGGR VHLLPVAPP+GTTEVDTLDSSREALR+GLKDGFAAAWNLMA PEL E + GE VA ELFDCEDVE F+ TF+RFST F GG G+ E  G
Sbjct:    1 MMSSIRPLVYSSVAPTRQRFTFLKRLRIRPTIRRIRGINFSRNVARIPASSPFEEDDEA-----IGHPPETLLHNQQ-PHRRRRFGGAVSYRQQISEES--------------TVTVTEGRVFDLPLLRLPPL---PSPLP---PLSQPGPPPS-RQVIETYTDFHQAFESFSEKEK---KARRRALSRLSVVGKTAERVREHPVLEVLHARVRSQSQPGQRTDPYKIGLAIEGGGMRGAVSAGAAAAINLLGLSDGFDAVYGSSAGALIAAFFVSGQLNGTIIYSDVLPAAGKRFLDRAQLIPAMGLLPGVEAKPVLNLQFLEDVIRNTVRLDWASFWAKNAVQPLNVVASSLDGMESLALRSDKGDFDSFESLIQCLKSSMCVPGVAGPPVFLNVTCRQTGERKERAFADALVFEPIPLKSAVEDGCTHIVTLRTRPDGSEVLGHKVTGIYERFIARRFLADLHKFRPAAMHMTKFDHLRQYAADLLLLNEGSHAKA---TGVHVPDGKGGGRAVHLLPVAPPMGTTEVDTLDSSREALRKGLKDGFAAAWNLMASPELAEVYPGEVVASELFDCEDVETFDLTFKRFSTVFQGGIGQAEENG 572
The following BLAST results are available for this feature:
BLAST of NO16G00950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24029.12.300e-22871.90Acyl transferase/acyl hydrolase/lysophospholipase ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00950NO16G00950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00950.1NO16G00950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00950.1.cds1NO16G00950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00950.1.cds2NO16G00950.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00950.1.cds3NO16G00950.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00950.1 ID=NO16G00950.1|Name=NO16G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1857bp
ATGCTTGCCTCGTTCCCACCTCTGGTCTCCTCGTCCATTGCCCCTCCTCG
GACTCGCTTCATGTTTTTGAAGAAAATACGGTTTCGCCCCACCATTCGCC
GCTTTCGCAGCATCAAGTTTTCGCGGCGTGTTTCTCGTACTCCCGCCTCG
TCCCCCTTTGACCAAGATGAAGAGTCCGCTGTAGCCAGCCTCGTCCTTCA
ACAGCAGCAGCACCTCCACCACTCGCAACAACAGCCGCATCAGCGTCGCC
GTCGGCGCTTCGGGACCTTTGAGCGCCAGCGCCTATCTCAGCCCAGCGAG
CTTTCCTCCTCATTTCCCTCCTCATCCTCTACCCCCCCCACCACCACCAT
CTCCGAGGGTCGCCTCTTGGAAATCCCTCTCCTACGCCTGCCCACTCTGC
AAGCACCCCCCCTCCCCCTCCCTACCTCTCTTCCTTCCTCCCCTCCCTCT
CCTTCTCCCACTACCCGCCAAGTTATCGAAAGATATCAAGACCTTCACCA
GGCTTTTGACGCGTTTACGGACAAGGAAAATTTAAAAAACAAGGCCCGAC
GTCGTGCGTTTACTCGTCTTTCTGTGGTGGGAAAAACGGCGGAAAGCATG
CAGGAGCACCCGGTTTTGAAAATCCTCCACGACCGCGTCCGCTCTGGATC
TCAGCCAGGCGAACGGCAAGACGGTTATAAAATAGGCTTGGCAATCGAAG
GGGGGGGAATGCGAGGCGCCGTCTCTGCCGGAGCAGCAGCAGCTACTAAT
TTGCTGGGGTTGTCTGACGCATTTGATGCCGTGTATGGGTCCAGTGCCGG
TGCGCTGATCGCAGCATTCTTTGTCTCCCGGCAGCTGAATGGCACGATTA
TTTACAGTGACATTCTGCCGGCTGCGGGGAAGAGGTTTTTAGACCGGACG
CAGTTGATACCGGCGATGGGGCTTCTTCCTGGGTTGGAAGCCAGACCCGT
ACTAAACCTGCAGTTTTTGGAGAAGGTGGTTCGGGAGACGGTGCGGTTGG
ACTGGGCAGAGTTTTGGAAGAACAACCAGAAGCAGCCTTTGAACATTGTG
GCGTCCAGCTTGGACGGGATGGAGAGTTTGGCTTTGACCAGCGAGAGGGG
GGATTGGAGTTGTTTCGAGGGGTTGATGCAGTGTTTGAAGTCCAGTATGT
GCGTACCAGGCGTGGCCGGGCCGCCGATCCGGCTGAACGTGACGTGTCGA
GTGACAGGGGAGAAGAAGGAAGGGGCTTTCGCGGATGCCCTTGTCTTCGA
GCCCATCCCTTTGAAGAGCGCAGTGGAGGACGGATGCACCCACATCGTGA
CGCTGAGGACGAGACCTGATGGAAGCGAGGTGCTGGGGCACAAGGTGACA
GGGATCTACGAGCGGTTCATTGCTCGTAGGTTCCTGGCAGAGAAACACTC
GTTTGGGGCTGCCGCGAGCCATATGACAAGGTTTGATCATTTGAAGCAGT
ATGCGGCGGATTTGTTGTTGTTAAATGAGGGGTCCCATGCCAAGGCCGGG
AGGGAGGAAGGGGTGTATGTGCCGGACGGAAAGGGGGGGGGGAGAGTGGT
GCACCTGCTGCCGGTAGCACCGCCGCTAGGTACGACAGAGGTTGATACAT
TGGACTCTTCGAGGGAAGCTTTGAGGAGGGGTTTGAAGGATGGGTTTGCG
GCGGCCTGGAATCTGATGGCACCGCCGGAGTTGGTGGAGGCCCATTCGGG
GGAAAGGGTGGCGAAAGAATTGTTTGATTGTGAGGACGTTGAGGGATTTA
ATTCGACGTTTGAGCGATTCAGTACTACATTTGGGGGAGGAGGGAGGGGG
GAAGGAAAGGGGGAGTGGAAGGAGGTAGGGAAGATGGCGGCGGCTATGGT
CGAATAA
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protein sequence of NO16G00950.1

>NO16G00950.1-protein ID=NO16G00950.1-protein|Name=NO16G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=619bp
MLASFPPLVSSSIAPPRTRFMFLKKIRFRPTIRRFRSIKFSRRVSRTPAS
SPFDQDEESAVASLVLQQQQHLHHSQQQPHQRRRRRFGTFERQRLSQPSE
LSSSFPSSSSTPPTTTISEGRLLEIPLLRLPTLQAPPLPLPTSLPSSPPS
PSPTTRQVIERYQDLHQAFDAFTDKENLKNKARRRAFTRLSVVGKTAESM
QEHPVLKILHDRVRSGSQPGERQDGYKIGLAIEGGGMRGAVSAGAAAATN
LLGLSDAFDAVYGSSAGALIAAFFVSRQLNGTIIYSDILPAAGKRFLDRT
QLIPAMGLLPGLEARPVLNLQFLEKVVRETVRLDWAEFWKNNQKQPLNIV
ASSLDGMESLALTSERGDWSCFEGLMQCLKSSMCVPGVAGPPIRLNVTCR
VTGEKKEGAFADALVFEPIPLKSAVEDGCTHIVTLRTRPDGSEVLGHKVT
GIYERFIARRFLAEKHSFGAAASHMTRFDHLKQYAADLLLLNEGSHAKAG
REEGVYVPDGKGGGRVVHLLPVAPPLGTTEVDTLDSSREALRRGLKDGFA
AAWNLMAPPELVEAHSGERVAKELFDCEDVEGFNSTFERFSTTFGGGGRG
EGKGEWKEVGKMAAAMVE*
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mRNA from alignment at chr16:306611..308811+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00950.1 ID=NO16G00950.1|Name=NO16G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2201bp|location=Sequence derived from alignment at chr16:306611..308811+ (Nannochloropsis oceanica)
ATGCTTGCCTCGTTCCCACCTCTGGTCTCCTCGTCCATTGCCCCTCCTCG
GACTCGCTTCATGTTTTTGAAGAAAATACGGTTTCGCCCCACCATTCGCC
GCTTTCGCAGCATCAAGTTTTCGCGGTACGTGTGTGCTTAAGGATGTACA
AACTCCGTGTAAAAATGGATAATGTGCGCGCTGCGAGCATCTACGGCGAG
TCTCTTGCCACCTGTGCGTTGCCTTTCGTAGACCAAGCAAACGTTTACGT
CTCGTTTCTCCCCGTGTCTGAATCTCACACATTCACCGTTCATTCCTCCC
CACATTTTCAACACAGGCGTGTTTCTCGTACTCCCGCCTCGTCCCCCTTT
GACCAAGATGAAGAGTCCGCTGTAGCCAGCCTCGTCCTTCAACAGCAGCA
GCACCTCCACCACTCGCAACAACAGCCGCATCAGCGTCGCCGTCGGCGCT
TCGGGACCTTTGAGCGCCAGCGCCTATCTCAGCCCAGCGAGCTTTCCTCC
TCATTTCCCTCCTCATCCTCTACCCCCCCCACCACCACCATCTCCGAGGG
TCGCCTCTTGGAAATCCCTCTCCTACGCCTGCCCACTCTGCAAGCACCCC
CCCTCCCCCTCCCTACCTCTCTTCCTTCCTCCCCTCCCTCTCCTTCTCCC
ACTACCCGCCAAGTTATCGAAAGATATCAAGACCTTCACCAGGCTTTTGA
CGCGTTTACGGACAAGGAAAATTTAAAAAACAAGGCCCGACGTCGTGCGT
TTACTCGTCTTTCTGTGGTGGGAAAAACGGCGGAAAGCATGCAGGAGCAC
CCGGTTTTGAAAATCCTCCACGACCGCGTCCGCTCTGGATCTCAGCCAGG
CGAACGGCAAGACGGTTATAAAATAGGCTTGGCAATCGAAGGGGGGGGAA
TGCGAGGCGCCGTCTCTGCCGGAGCAGCAGCAGCTACTAATTTGCTGGGG
TTGTCTGACGCATTTGATGCCGTGTATGGGTCCAGTGCCGGTGCGCTGAT
CGCAGCATTCTTTGTCTCCCGGCAGCTGAATGGCACGATTATTTACAGTG
ACATTCTGCCGGCTGCGGGGAAGAGGTTTTTAGACCGGACGCAGTTGATA
CCGGCGATGGGGCTTCTTCCTGGGTGGGTGCCTTCTTCCCTCCCTCCCTC
GGTCCTTGCCCCTAGAATTTGTAGACATTCCAAATGTACCCGCACGCTAC
CTCTAACCTCTCGCTCGCCCATTCCTTCCTCGCTCCTCTCCCCTCCCCTC
TTTCGCCCTCTTTTTCTTCTCCTTAGGTTGGAAGCCAGACCCGTACTAAA
CCTGCAGTTTTTGGAGAAGGTGGTTCGGGAGACGGTGCGGTTGGACTGGG
CAGAGTTTTGGAAGAACAACCAGAAGCAGCCTTTGAACATTGTGGCGTCC
AGCTTGGACGGGATGGAGAGTTTGGCTTTGACCAGCGAGAGGGGGGATTG
GAGTTGTTTCGAGGGGTTGATGCAGTGTTTGAAGTCCAGTATGTGCGTAC
CAGGCGTGGCCGGGCCGCCGATCCGGCTGAACGTGACGTGTCGAGTGACA
GGGGAGAAGAAGGAAGGGGCTTTCGCGGATGCCCTTGTCTTCGAGCCCAT
CCCTTTGAAGAGCGCAGTGGAGGACGGATGCACCCACATCGTGACGCTGA
GGACGAGACCTGATGGAAGCGAGGTGCTGGGGCACAAGGTGACAGGGATC
TACGAGCGGTTCATTGCTCGTAGGTTCCTGGCAGAGAAACACTCGTTTGG
GGCTGCCGCGAGCCATATGACAAGGTTTGATCATTTGAAGCAGTATGCGG
CGGATTTGTTGTTGTTAAATGAGGGGTCCCATGCCAAGGCCGGGAGGGAG
GAAGGGGTGTATGTGCCGGACGGAAAGGGGGGGGGGAGAGTGGTGCACCT
GCTGCCGGTAGCACCGCCGCTAGGTACGACAGAGGTTGATACATTGGACT
CTTCGAGGGAAGCTTTGAGGAGGGGTTTGAAGGATGGGTTTGCGGCGGCC
TGGAATCTGATGGCACCGCCGGAGTTGGTGGAGGCCCATTCGGGGGAAAG
GGTGGCGAAAGAATTGTTTGATTGTGAGGACGTTGAGGGATTTAATTCGA
CGTTTGAGCGATTCAGTACTACATTTGGGGGAGGAGGGAGGGGGGAAGGA
AAGGGGGAGTGGAAGGAGGTAGGGAAGATGGCGGCGGCTATGGTCGAATA
A
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Coding sequence (CDS) from alignment at chr16:306611..308811+

>NO16G00950.1 ID=NO16G00950.1|Name=NO16G00950.1|organism=Nannochloropsis oceanica|type=CDS|length=1857bp|location=Sequence derived from alignment at chr16:306611..308811+ (Nannochloropsis oceanica)
ATGCTTGCCTCGTTCCCACCTCTGGTCTCCTCGTCCATTGCCCCTCCTCG
GACTCGCTTCATGTTTTTGAAGAAAATACGGTTTCGCCCCACCATTCGCC
GCTTTCGCAGCATCAAGTTTTCGCGGCGTGTTTCTCGTACTCCCGCCTCG
TCCCCCTTTGACCAAGATGAAGAGTCCGCTGTAGCCAGCCTCGTCCTTCA
ACAGCAGCAGCACCTCCACCACTCGCAACAACAGCCGCATCAGCGTCGCC
GTCGGCGCTTCGGGACCTTTGAGCGCCAGCGCCTATCTCAGCCCAGCGAG
CTTTCCTCCTCATTTCCCTCCTCATCCTCTACCCCCCCCACCACCACCAT
CTCCGAGGGTCGCCTCTTGGAAATCCCTCTCCTACGCCTGCCCACTCTGC
AAGCACCCCCCCTCCCCCTCCCTACCTCTCTTCCTTCCTCCCCTCCCTCT
CCTTCTCCCACTACCCGCCAAGTTATCGAAAGATATCAAGACCTTCACCA
GGCTTTTGACGCGTTTACGGACAAGGAAAATTTAAAAAACAAGGCCCGAC
GTCGTGCGTTTACTCGTCTTTCTGTGGTGGGAAAAACGGCGGAAAGCATG
CAGGAGCACCCGGTTTTGAAAATCCTCCACGACCGCGTCCGCTCTGGATC
TCAGCCAGGCGAACGGCAAGACGGTTATAAAATAGGCTTGGCAATCGAAG
GGGGGGGAATGCGAGGCGCCGTCTCTGCCGGAGCAGCAGCAGCTACTAAT
TTGCTGGGGTTGTCTGACGCATTTGATGCCGTGTATGGGTCCAGTGCCGG
TGCGCTGATCGCAGCATTCTTTGTCTCCCGGCAGCTGAATGGCACGATTA
TTTACAGTGACATTCTGCCGGCTGCGGGGAAGAGGTTTTTAGACCGGACG
CAGTTGATACCGGCGATGGGGCTTCTTCCTGGGTTGGAAGCCAGACCCGT
ACTAAACCTGCAGTTTTTGGAGAAGGTGGTTCGGGAGACGGTGCGGTTGG
ACTGGGCAGAGTTTTGGAAGAACAACCAGAAGCAGCCTTTGAACATTGTG
GCGTCCAGCTTGGACGGGATGGAGAGTTTGGCTTTGACCAGCGAGAGGGG
GGATTGGAGTTGTTTCGAGGGGTTGATGCAGTGTTTGAAGTCCAGTATGT
GCGTACCAGGCGTGGCCGGGCCGCCGATCCGGCTGAACGTGACGTGTCGA
GTGACAGGGGAGAAGAAGGAAGGGGCTTTCGCGGATGCCCTTGTCTTCGA
GCCCATCCCTTTGAAGAGCGCAGTGGAGGACGGATGCACCCACATCGTGA
CGCTGAGGACGAGACCTGATGGAAGCGAGGTGCTGGGGCACAAGGTGACA
GGGATCTACGAGCGGTTCATTGCTCGTAGGTTCCTGGCAGAGAAACACTC
GTTTGGGGCTGCCGCGAGCCATATGACAAGGTTTGATCATTTGAAGCAGT
ATGCGGCGGATTTGTTGTTGTTAAATGAGGGGTCCCATGCCAAGGCCGGG
AGGGAGGAAGGGGTGTATGTGCCGGACGGAAAGGGGGGGGGGAGAGTGGT
GCACCTGCTGCCGGTAGCACCGCCGCTAGGTACGACAGAGGTTGATACAT
TGGACTCTTCGAGGGAAGCTTTGAGGAGGGGTTTGAAGGATGGGTTTGCG
GCGGCCTGGAATCTGATGGCACCGCCGGAGTTGGTGGAGGCCCATTCGGG
GGAAAGGGTGGCGAAAGAATTGTTTGATTGTGAGGACGTTGAGGGATTTA
ATTCGACGTTTGAGCGATTCAGTACTACATTTGGGGGAGGAGGGAGGGGG
GAAGGAAAGGGGGAGTGGAAGGAGGTAGGGAAGATGGCGGCGGCTATGGT
CGAATAA
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Synonyms
Publications