NO16G00800.1, NO16G00800.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO16G00800.1
Unique Name	NO16G00800.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2987
Alignment location	chr16:262461..265785 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr16	genome	chr16:262461..265785 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO16G00800.1 vs.
Match: XP_005854278.1 (hypothetical protein NGA_0208400 [Nannochloropsis gaditana CCMP526]; EKU22083.1 hypothetical protein NGA_0208400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 450.3 bits (1157), Expect = 6.900e-123
Identity = 240/415 (57.83%), Postives = 286/415 (68.92%), Query Frame = 0

Query:   23 NKDLSAEIEEAFGDYGLGILTVSGVPGLEEKRRALLPLAHRFASLPPALTKKYEHPQSFYSFGWSHGKETLQHGRPDWLKGSFYANPLHDNPSTDQDLIDRYPAFLHPNIWPSKDVPALESAFKDLGKLIVDVGAMVAKQCDVYVGSKCAGYANNGKVEKEGGKEGMGKLERVVRESRVCKGRLLHYFPYVAKEQEEEKGKEGKGTVCPKKEADEKDEEGGKKEMYFSTWCGWHNDHGSLTGLTSAMYLDVEGREVDVCSSTSSSASSNSEDDEEEEDDGGLYALSRGGEVVKILLLPHQLAFQIGETAQIHSGGLLRATPHAVKGSTTRTKKGLSRETFAVFMEPEMHEPMTMPEGRTVDDVCKKQGIMESDGGKECEGREGGRVGVSVPSLASRWDPSIDFAEFTSRTLKSYY 438
            +KDLS EIE+AFG++G+G+LTVSGVPGL EKRR++L LA+ FASLP  +  KYEH  S YSFGWSHGKE LQ GRPD LKGS+YANPLHD P +DQ+LI++YPAFLHPNIWP+ D+PALE AFKD+G LIV+VGA+VA+QCD YV   C  Y  N             +LE++VRESRVCK RLLHYFP +     E KG +G         A    E  G+     S WCGWHNDHGSLTGLTSA+Y+D EG EVD             E +E     GGL+ LSR G+VVK+ + P  LAFQIGETAQIHSGGLL+ATPHAVKG TT  K+ LSRETFAVFMEPEM E MTMP GR+ +DV +K G    + G            V +PSL SRW+P + FA+FT++TL SYY
Sbjct:    4 SKDLSREIEKAFGEHGMGLLTVSGVPGLSEKRRSILHLAYAFASLPSTVRAKYEHSLSSYSFGWSHGKECLQEGRPDLLKGSYYANPLHDTPCSDQNLIEKYPAFLHPNIWPTADLPALEPAFKDMGGLIVEVGALVARQCDSYVSRMCPAYPPN-------------RLEKIVRESRVCKARLLHYFPIIP----EGKGPDG---------AARGWEGTGEAWAGASEWCGWHNDHGSLTGLTSALYVDEEGEEVDFSDCFGKGVHGGLEKEE-----GGLFVLSRNGQVVKVNIPPDHLAFQIGETAQIHSGGLLKATPHAVKG-TTLAKRRLSRETFAVFMEPEMDESMTMPAGRSREDVTQKIGDRIHEKGAH----------VHLPSLDSRWEPGMSFADFTAKTLASYY 376

The following BLAST results are available for this feature:

BLAST of NO16G00800.1 vs.

BLAST of NO16G00800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005854278.1	6.900e-123	57.83	hypothetical protein NGA_0208400 [Nannochloropsis ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO16G00800	NO16G00800	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO16G00800.1	NO16G00800.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO16G00800.1.cds1	NO16G00800.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G00800.1.cds2	NO16G00800.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G00800.1.cds3	NO16G00800.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr16:262461..265785+
coding sequence from alignment at chr16:262461..265785+

mRNA sequence

>NO16G00800.1 ID=NO16G00800.1|Name=NO16G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2987bp
GTTCATCAACTAGCTAACCACAGTCCTCTACAATTTTCTTTGGCTATATG
CACGTCCCTACCCACATTACCCACATACTCATGCACCACCACACCAAGGT
CATTCCTCCATACACACACCACCACCACCCTTCCACCCTCCTCTTCTTCC
CCGCCGGGGACGACACAAAAAAGTCCGAGCTTCCCCGCTCCGTCTCTTTG
AGTAGAGGCAAGGGTGAGTACGCAAATCGGGTCACGTCCATGTAGCTAGT
TCCTCGGTACGCTACACCCAGAGGCCTCAAAATGATTCGAATTGACATTG
GCTCGTAAGGTAACCGTGCACCTCCTTTCCCTCCATTTCTCATGGCTTTA
TCCACCTCCGCTGCCTTGGCACCTGCACAAAAGCTCATCCCTGGCATATC
CCACAATAGAAAATCATCCAACCAAAATCTCACCCGTGTCGGCCCCCACT
CAATGCTATAAGTGTAGAAAGCCTGCGAGAGGTCTCTCTTTACGTTTACC
TGCTTCGCTTCCTCCCGATCAGCAGGCGAGCCATTCCACACACCCATCCG
CACAGTGGTAGGGTCATGAGAGGACACGCACATTGAAGCTTCGTTACGAT
AGCCATATTGAGAGACAGTGTCGTGGATATAAAGGCCAAAGCACGAAAAG
CTGTCCTCGCTCTGGTACCCCGGCCCTGCCTCCGGTCCATAGCCTATCCG
CGCAGTCAAGTCAATGCGACCTCCTTGTATGTAAAATTTGGTGAGTAAAT
GGCCGGTGGCAATTTCCGAATTGCGGTCACAGACACTCCCACCGATGTTG
TCTTGGACGATGCGCAACCCTCGCGCGTCGGTTGAGAGACCGGCTCCTTC
CAAGGACGTGTTGTAGAGCAAGTGGTCTGTGCGTCGGCATGCCCGCACTT
TGTTTGTATAAAGTCGACCATAGTTCTCGTGCAGGAATGTCAGGGTTTGT
GTCTTGTCTGTGAAGTCCGTGGCAAAGGGTGCGGTGGAGTTGTAGATGAG
GGGTGGGGGGCGAAGGACAGGGCAGGCGTCGTTATTAGCTTGGGATTTGA
CCGCCGGTTTTGGGAAAAAGAGGAAGAATGAGATAAGAACAAAGGGAGTA
AGGATGAAATGACACTGCGGGCGGGCGTGAGCAGTGACATGGCCTGGCAT
TATTAGACGGACTGGGGATGGAGTGAGGGCGGTCGACGTTGGCACGAAGA
TCGAAGATGGGCCGGACGGTTTGCTTTGCTTTACCCGATTGATGCGGTCA
AAGAACCCATAATGCGCAGGGCGGCTGTGTCTTATGTTGAAAGTATATGG
ATGTCAAGTGTGTCACGTAAGTGTTGGCGGGTATGGTGCGTTTGCTTGTA
GCAGGACGTCCTTGCTTGTCCAGTGGGCGGCAGGCGCGGCGAGAAGGAGC
AGGTCGGCCTGAAAACTTTTGCCAGACCGCAGGGGGTCGCCAAATACAAG
CCCTGCCCGCGATAAAACCCACCCACCTTATGCTACGCCTCACGCAAACG
ATTTATGGCACCATATATTACCGAAGACAGGGCAGGGTAGTCGCCAGAAT
CACCCGGGCGAGCCACGAAAGCGAAAAAGGAGCTTAGCTGCCTTCTGACT
TCGAAGCACCACAGGGTGATGGCCAAGACAACGACCACCACGCCACGGAA
GCTTGTGGAATTGCAGTACGAAAACTTGGTGGCCAACAAAGACTTGTCGG
CGGAGATAGAGGAGGCATTTGGTGATTATGGTCTAGGCATCTTGACCGTC
TCCGGTGTCCCGGGCCTCGAAGAAAAGCGCCGGGCCCTCCTTCCCCTCGC
CCACCGCTTCGCCTCCCTCCCTCCCGCCCTCACCAAAAAGTACGAACACC
CGCAGAGTTTCTATTCCTTCGGATGGAGCCATGGGAAAGAAACTCTGCAA
CACGGTCGGCCCGATTGGTTGAAAGGTTCATTTTATGCAAATCCTTTGCA
CGATAACCCCTCGACAGATCAAGATTTAATTGACAGATACCCGGCCTTTT
TACACCCGAACATATGGCCTTCCAAGGACGTACCAGCGTTGGAATCAGCA
TTCAAAGACTTGGGGAAGTTGATTGTAGACGTCGGGGCGATGGTTGCCAA
GCAGTGTGATGTGTATGTGGGGAGCAAGTGCGCAGGATATGCTAATAATG
GCAAAGTAGAGAAAGAGGGAGGGAAGGAGGGCATGGGGAAGTTGGAAAGG
GTTGTGAGGGAGTCCAGGGTGTGTAAGGGGAGACTGCTGCATTATTTTCC
GTATGTTGCAAAGGAGCAGGAGGAGGAAAAGGGGAAGGAAGGGAAGGGAA
CCGTGTGCCCCAAAAAAGAGGCGGACGAGAAGGACGAGGAGGGAGGGAAG
AAGGAAATGTATTTTAGCACCTGGTGTGGCTGGCACAACGATCATGGATC
TCTCACGGGATTGACTTCAGCCATGTACTTGGATGTGGAAGGGCGGGAGG
TTGATGTATGCAGCAGCACGAGCAGCAGCGCTAGCAGCAACAGCGAGGAT
GATGAAGAAGAGGAAGACGATGGCGGCCTCTACGCCCTAAGCCGAGGCGG
GGAGGTAGTCAAAATCCTTCTCCTTCCCCATCAGCTCGCCTTTCAAATAG
GTGAGACCGCCCAAATTCACTCGGGAGGATTGCTGCGTGCCACTCCACAC
GCTGTGAAGGGGAGCACGACAAGGACGAAGAAAGGGCTTAGTCGAGAGAC
CTTTGCAGTGTTTATGGAGCCAGAAATGCACGAGCCCATGACCATGCCCG
AAGGTCGGACAGTGGATGACGTATGTAAGAAGCAAGGTATCATGGAGTCC
GATGGCGGGAAAGAGTGTGAGGGCCGAGAAGGAGGGAGGGTAGGCGTAAG
TGTGCCGTCGTTGGCCAGCCGGTGGGATCCGAGTATCGACTTTGCTGAAT
TTACATCGAGGACGCTAAAGAGCTATTATTGACAAGGAAACTGTCGGAAT
CTTGATGGAAAAAGAATGCACAATGAAATAAGGAAGA

protein sequence of NO16G00800.1

>NO16G00800.1-protein ID=NO16G00800.1-protein|Name=NO16G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=438bp
MAKTTTTTPRKLVELQYENLVANKDLSAEIEEAFGDYGLGILTVSGVPGL
EEKRRALLPLAHRFASLPPALTKKYEHPQSFYSFGWSHGKETLQHGRPDW
LKGSFYANPLHDNPSTDQDLIDRYPAFLHPNIWPSKDVPALESAFKDLGK
LIVDVGAMVAKQCDVYVGSKCAGYANNGKVEKEGGKEGMGKLERVVRESR
VCKGRLLHYFPYVAKEQEEEKGKEGKGTVCPKKEADEKDEEGGKKEMYFS
TWCGWHNDHGSLTGLTSAMYLDVEGREVDVCSSTSSSASSNSEDDEEEED
DGGLYALSRGGEVVKILLLPHQLAFQIGETAQIHSGGLLRATPHAVKGST
TRTKKGLSRETFAVFMEPEMHEPMTMPEGRTVDDVCKKQGIMESDGGKEC
EGREGGRVGVSVPSLASRWDPSIDFAEFTSRTLKSYY*

mRNA from alignment at chr16:262461..265785+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO16G00800.1 ID=NO16G00800.1|Name=NO16G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=3325bp|location=Sequence derived from alignment at chr16:262461..265785+ (Nannochloropsis oceanica)
GTTCATCAACTAGCTAACCACAGTCCTCTACAATTTTCTTTGGCTATATG
CACGTCCCTACCCACATTACCCACATACTCATGCACCACCACACCAAGGT
CATTCCTCCATACACACACCACCACCACCCTTCCACCCTCCTCTTCTTCC
CCGCCGGGGACGACACAAAAAAGTCCGAGCTTCCCCGCTCCGTCTCTTTG
AGTAGAGGCAAGGGTGAGTACGCAAATCGGGTCACGTCCATGTAGCTAGT
TCCTCGGTACGCTACACCCAGAGGCCTCAAAATGATTCGAATTGACATTG
GCTCGTAAGGTAACCGTGCACCTCCTTTCCCTCCATTTCTCATGGCTTTA
TCCACCTCCGCTGCCTTGGCACCTGCACAAAAGCTCATCCCTGGCATATC
CCACAATAGAAAATCATCCAACCAAAATCTCACCCGTGTCGGCCCCCACT
CAATGCTATAAGTGTAGAAAGCCTGCGAGAGGTCTCTCTTTACGTTTACC
TGCTTCGCTTCCTCCCGATCAGCAGGCGAGCCATTCCACACACCCATCCG
CACAGTGGTAGGGTCATGAGAGGACACGCACATTGAAGCTTCGTTACGAT
AGCCATATTGAGAGACAGTGTCGTGGATATAAAGGCCAAAGCACGAAAAG
CTGTCCTCGCTCTGGTACCCCGGCCCTGCCTCCGGTCCATAGCCTATCCG
CGCAGTCAAGTCAATGCGACCTCCTTGTATGTAAAATTTGGTGAGTAAAT
GGCCGGTGGCAATTTCCGAATTGCGGTCACAGACACTCCCACCGATGTTG
TCTTGGACGATGCGCAACCCTCGCGCGTCGGTTGAGAGACCGGCTCCTTC
CAAGGACGTGTTGTAGAGCAAGTGGTCTGTGCGTCGGCATGCCCGCACTT
TGTTTGTATAAAGTCGACCATAGTTCTCGTGCAGGAATGTCAGGGTTTGT
GTCTTGTCTGTGAAGTCCGTGGCAAAGGGTGCGGTGGAGTTGTAGATGAG
GGGTGGGGGGCGAAGGACAGGGCAGGCGTCGTTATTAGCTTGGGATTTGA
CCGCCGGTTTTGGGAAAAAGAGGAAGAATGAGATAAGAACAAAGGGAGTA
AGGATGAAATGACACTGCGGGCGGGCGTGAGCAGTGACATGGCCTGGCAT
TATTAGACGGACTGGGGATGGAGTGAGGGCGGTCGACGTTGGCACGAAGA
TCGAAGATGGGCCGGACGGTTTGCTTTGCTTTACCCGATTGATGCGGTCA
AAGAACCCATAATGCGCAGGGCGGCTGTGTCTTATGTTGAAAGTATATGG
ATGTCAAGTGTGTCACGTAAGTGTTGGCGGGTATGGTGCGTTTGCTTGTA
GCAGGACGTCCTTGCTTGTCCAGTGGGCGGCAGGCGCGGCGAGAAGGAGC
AGGTCGGCCTGAAAACTTTTGCCAGACCGCAGGGGGTCGCCAAATACAAG
CCCTGCCCGCGATAAAACCCACCCACCTTATGCTACGCCTCACGCAAACG
ATTTATGGCACCATATATTACCGAAGACAGGGCAGGGTAGTCGCCAGAAT
CACCCGGGCGAGCCACGAAAGCGAAAAAGGAGCTTAGCTGCCTTCTGACT
TCGAAGCACCACAGGGTGATGGCCAAGACAACGACCACCACGCCACGGTG
AGTAAGCTCACGCTCGGAGCATGCCAGGAAAAAACGTCCTGAGTGACCGC
TGCATGAACCTTATCCTCTTTCAGGAAGCTTGTGGAATTGCAGTACGAAA
ACTTGGTGGCCAACAAAGACTTGTCGGCGGAGATAGAGGAGGTAAGTGCT
TGAAACGGGGGGGATGCAAGAAGGCAAGGAAGAAGGAATCGAGCATCAGA
GACAGTCTGGCTAGAACTGGGGCTGTCGTGCGCGGTCAGGTTTGAGAATC
GACTGAAGCAGCTTAGAAAACAGTGCATCTGACTGTGCCGCATGTTGAGA
CAACCCTTCTTCGAGCCCGACCCTTCTTTCTCTCGTTCCTTTCTCCCTCC
TCTCACACTCCCTCCATTTGCCGCACACACCCCTACACCCGCCAACTGAC
AGGCATTTGGTGATTATGGTCTAGGCATCTTGACCGTCTCCGGTGTCCCG
GGCCTCGAAGAAAAGCGCCGGGCCCTCCTTCCCCTCGCCCACCGCTTCGC
CTCCCTCCCTCCCGCCCTCACCAAAAAGTACGAACACCCGCAGAGTTTCT
ATTCCTTCGGATGGAGCCATGGGAAAGAAACTCTGCAACACGGTCGGCCC
GATTGGTTGAAAGGTTCATTTTATGCAAATCCTTTGCACGATAACCCCTC
GACAGATCAAGATTTAATTGACAGATACCCGGCCTTTTTACACCCGAACA
TATGGCCTTCCAAGGACGTACCAGCGTTGGAATCAGCATTCAAAGACTTG
GGGAAGTTGATTGTAGACGTCGGGGCGATGGTTGCCAAGCAGTGTGATGT
GTATGTGGGGAGCAAGTGCGCAGGATATGCTAATAATGGCAAAGTAGAGA
AAGAGGGAGGGAAGGAGGGCATGGGGAAGTTGGAAAGGGTTGTGAGGGAG
TCCAGGGTGTGTAAGGGGAGACTGCTGCATTATTTTCCGTATGTTGCAAA
GGAGCAGGAGGAGGAAAAGGGGAAGGAAGGGAAGGGAACCGTGTGCCCCA
AAAAAGAGGCGGACGAGAAGGACGAGGAGGGAGGGAAGAAGGAAATGTAT
TTTAGCACCTGGTGTGGCTGGCACAACGATCATGGATCTCTCACGGGATT
GACTTCAGCCATGTACTTGGATGTGGAAGGGCGGGAGGTTGATGTATGCA
GCAGCACGAGCAGCAGCGCTAGCAGCAACAGCGAGGATGATGAAGAAGAG
GAAGACGATGGCGGCCTCTACGCCCTAAGCCGAGGCGGGGAGGTAGTCAA
AATCCTTCTCCTTCCCCATCAGCTCGCCTTTCAAATAGGTGAGACCGCCC
AAATTCACTCGGGAGGATTGCTGCGTGCCACTCCACACGCTGTGAAGGGG
AGCACGACAAGGACGAAGAAAGGGCTTAGTCGAGAGACCTTTGCAGTGTT
TATGGAGCCAGAAATGCACGAGCCCATGACCATGCCCGAAGGTCGGACAG
TGGATGACGTATGTAAGAAGCAAGGTATCATGGAGTCCGATGGCGGGAAA
GAGTGTGAGGGCCGAGAAGGAGGGAGGGTAGGCGTAAGTGTGCCGTCGTT
GGCCAGCCGGTGGGATCCGAGTATCGACTTTGCTGAATTTACATCGAGGA
CGCTAAAGAGCTATTATTGACAAGGAAACTGTCGGAATCTTGATGGAAAA
AGAATGCACAATGAAATAAGGAAGA

Coding sequence (CDS) from alignment at chr16:262461..265785+

>NO16G00800.1 ID=NO16G00800.1|Name=NO16G00800.1|organism=Nannochloropsis oceanica|type=CDS|length=1314bp|location=Sequence derived from alignment at chr16:262461..265785+ (Nannochloropsis oceanica)
ATGGCCAAGACAACGACCACCACGCCACGGAAGCTTGTGGAATTGCAGTA
CGAAAACTTGGTGGCCAACAAAGACTTGTCGGCGGAGATAGAGGAGGCAT
TTGGTGATTATGGTCTAGGCATCTTGACCGTCTCCGGTGTCCCGGGCCTC
GAAGAAAAGCGCCGGGCCCTCCTTCCCCTCGCCCACCGCTTCGCCTCCCT
CCCTCCCGCCCTCACCAAAAAGTACGAACACCCGCAGAGTTTCTATTCCT
TCGGATGGAGCCATGGGAAAGAAACTCTGCAACACGGTCGGCCCGATTGG
TTGAAAGGTTCATTTTATGCAAATCCTTTGCACGATAACCCCTCGACAGA
TCAAGATTTAATTGACAGATACCCGGCCTTTTTACACCCGAACATATGGC
CTTCCAAGGACGTACCAGCGTTGGAATCAGCATTCAAAGACTTGGGGAAG
TTGATTGTAGACGTCGGGGCGATGGTTGCCAAGCAGTGTGATGTGTATGT
GGGGAGCAAGTGCGCAGGATATGCTAATAATGGCAAAGTAGAGAAAGAGG
GAGGGAAGGAGGGCATGGGGAAGTTGGAAAGGGTTGTGAGGGAGTCCAGG
GTGTGTAAGGGGAGACTGCTGCATTATTTTCCGTATGTTGCAAAGGAGCA
GGAGGAGGAAAAGGGGAAGGAAGGGAAGGGAACCGTGTGCCCCAAAAAAG
AGGCGGACGAGAAGGACGAGGAGGGAGGGAAGAAGGAAATGTATTTTAGC
ACCTGGTGTGGCTGGCACAACGATCATGGATCTCTCACGGGATTGACTTC
AGCCATGTACTTGGATGTGGAAGGGCGGGAGGTTGATGTATGCAGCAGCA
CGAGCAGCAGCGCTAGCAGCAACAGCGAGGATGATGAAGAAGAGGAAGAC
GATGGCGGCCTCTACGCCCTAAGCCGAGGCGGGGAGGTAGTCAAAATCCT
TCTCCTTCCCCATCAGCTCGCCTTTCAAATAGGTGAGACCGCCCAAATTC
ACTCGGGAGGATTGCTGCGTGCCACTCCACACGCTGTGAAGGGGAGCACG
ACAAGGACGAAGAAAGGGCTTAGTCGAGAGACCTTTGCAGTGTTTATGGA
GCCAGAAATGCACGAGCCCATGACCATGCCCGAAGGTCGGACAGTGGATG
ACGTATGTAAGAAGCAAGGTATCATGGAGTCCGATGGCGGGAAAGAGTGT
GAGGGCCGAGAAGGAGGGAGGGTAGGCGTAAGTGTGCCGTCGTTGGCCAG
CCGGTGGGATCCGAGTATCGACTTTGCTGAATTTACATCGAGGACGCTAA
AGAGCTATTATTGA

Synonyms

Publications