NO16G00630.1, NO16G00630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00630.1
Unique NameNO16G00630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1497
Alignment locationchr16:222289..223981 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:222289..223981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00630.1 vs.
Match: EWM24067.1 (gdp-mannose -epimerase [Nannochloropsis gaditana])

HSP 1 Score: 638.3 bits (1645), Expect = 1.600e-179
Identity = 316/373 (84.72%), Postives = 330/373 (88.47%), Query Frame = 0 
Query:    7 PLVTGKKVLVAGGGGFIGSHLARRLKKDGNYVVVADWKRNEFMTEPEFCDEFLQVDLRELDNCIKASKGCNHVYNLAADMGGMGFIESNQSVLMWNNTMVSSNVLEAARRNGAERYFYSSTACVYNEDLQLDPSNPGLKEADAWPAKPQEVYGLEKLYHEEMALAYSRDFPMVSRIARFHNVYGPFGTWKGGREKAPAAFCRKAVGSTEHFEVWGDGEQTRSFMYVDDCVEGVLRIMMSETAVKPLNLGTEEMVSMNKFAEIAMSFENKYLPIKHIPGPQGVRGRNSDNTLIREELGWEPLISIQEGLRETYFWIKGQIEKERAAGIVFDYSSSKVVVQTTDSLDALGGKEKGLVSSIPESDLASNSNAGIQV 380
            PLVTGKKVLVAGGGGFIGSHLARRLKKDGNYVVVADWK+NEFM EPEFCDEF  VDLREL+NCIKASKGC+HVYNLAADMGGMGFIESNQSVLMWNNTMVSSNVLEAARRNGAERYFYSSTACVYNEDLQLDPSNPGLKE DAWPAKPQEVYGLEKLYHEEMALAYSRDFP+VSRIARFHNVYGPFGTWKGGREKAPAAFCRKAVGSTEHFEVWGDGEQTRSFMYVDDCVEGVLRIMMS+TA  PLNLGTE+M                           GVRGRNSDNTLIRE LGWEPLISI++GLRETYFWIKGQIEKERAAG+VFDYSSSKVVVQTT+SLDAL  K++   +SIPESD ASN   G+QV
Sbjct:    6 PLVTGKKVLVAGGGGFIGSHLARRLKKDGNYVVVADWKKNEFMAEPEFCDEFFLVDLRELENCIKASKGCHHVYNLAADMGGMGFIESNQSVLMWNNTMVSSNVLEAARRNGAERYFYSSTACVYNEDLQLDPSNPGLKEGDAWPAKPQEVYGLEKLYHEEMALAYSRDFPLVSRIARFHNVYGPFGTWKGGREKAPAAFCRKAVGSTEHFEVWGDGEQTRSFMYVDDCVEGVLRIMMSDTATMPLNLGTEQM---------------------------GVRGRNSDNTLIREMLGWEPLISIEDGLRETYFWIKGQIEKERAAGVVFDYSSSKVVVQTTESLDALASKQE-KSNSIPESDSASN---GVQV 347
The following BLAST results are available for this feature:
BLAST of NO16G00630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24067.11.600e-17984.72gdp-mannose -epimerase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00630NO16G00630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00630.1NO16G00630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00630.1.cds1NO16G00630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00630.1.cds2NO16G00630.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00630.1 ID=NO16G00630.1|Name=NO16G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1497bp
CACTTTACAGCAAAGCAACAATGAGCAACTCCTCTACCCCTTTGGTGACA
GGCAAGAAAGTCCTGGTGGCCGGCGGCGGCGGCTTCATCGGCTCCCACCT
GGCCCGTCGTCTCAAGAAGGACGGGAACTATGTCGTGGTGGCCGACTGGA
AGCGCAACGAATTCATGACAGAGCCCGAGTTCTGCGATGAGTTTCTCCAA
GTCGATTTGCGGGAACTTGACAACTGCATCAAGGCTTCCAAGGGCTGCAA
CCACGTGTACAATTTAGCTGCAGACATGGGCGGAATGGGCTTCATCGAGT
CCAATCAGTCCGTGCTCATGTGGAACAACACCATGGTCTCCTCCAATGTC
CTTGAGGCCGCGCGTCGTAATGGCGCTGAGCGTTATTTCTACTCCTCGAC
GGCTTGTGTTTACAACGAGGATCTGCAGCTTGACCCGTCCAATCCCGGGT
TGAAGGAGGCGGATGCCTGGCCCGCCAAGCCGCAAGAGGTGTACGGGCTT
GAAAAGCTTTACCATGAAGAAATGGCACTGGCGTACTCCCGGGACTTCCC
CATGGTGTCGCGCATTGCTCGATTCCACAATGTCTACGGCCCATTCGGCA
CCTGGAAGGGCGGTCGTGAAAAGGCCCCGGCTGCCTTCTGCCGCAAGGCC
GTGGGGAGCACGGAGCACTTCGAAGTGTGGGGAGATGGGGAGCAGACGCG
ATCGTTCATGTATGTCGATGATTGTGTGGAGGGAGTGTTGCGCATCATGA
TGAGTGAGACGGCGGTCAAGCCCTTGAACCTCGGCACGGAAGAGATGGTG
TCGATGAACAAATTTGCTGAGATTGCCATGAGCTTCGAAAACAAGTATTT
GCCCATCAAGCACATCCCGGGCCCGCAAGGCGTGCGTGGACGTAACTCTG
ACAATACTCTCATTCGGGAGGAGCTTGGCTGGGAGCCTCTCATCTCAATT
CAGGAAGGCCTTCGCGAAACCTACTTTTGGATCAAGGGACAGATTGAGAA
GGAGCGCGCGGCCGGGATAGTGTTTGACTACTCTTCCTCTAAGGTGGTTG
TCCAGACGACGGATTCCCTGGATGCGCTGGGCGGGAAAGAGAAGGGGTTG
GTGAGCAGCATTCCGGAATCGGACTTGGCCAGCAATAGCAATGCCGGCAT
CCAGGTGATTGCTTAGAAATTGCAAGGCGCGGCATGTAGAACGAGGGAAA
GGTAGGGAGGGGGGGAAGAATGGGATAAAGTAGTATGGCTAGCCGGCGAG
AGATGCATGTTGAGATTGACGGAGGCCTCAGTCTCGATTCCAAGAAAATG
AAGGCAGAGGGGTAAGATTCAGATTGTATGTTGCATGTTCACACGCCTAC
GGTATGACGAGAGGAAGTCAAGAAGAGCCAAAAGCAATGTGACAATGCCG
AGTATCACTCTGTGGCCATGGGTCAGGAAGGTACCTGTCCGTTAATGAAT
GTCAACAATCGAAAGTATGAAAGGGTAGTGGCATGCATGAAACCGTG
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protein sequence of NO16G00630.1

>NO16G00630.1-protein ID=NO16G00630.1-protein|Name=NO16G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MSNSSTPLVTGKKVLVAGGGGFIGSHLARRLKKDGNYVVVADWKRNEFMT
EPEFCDEFLQVDLRELDNCIKASKGCNHVYNLAADMGGMGFIESNQSVLM
WNNTMVSSNVLEAARRNGAERYFYSSTACVYNEDLQLDPSNPGLKEADAW
PAKPQEVYGLEKLYHEEMALAYSRDFPMVSRIARFHNVYGPFGTWKGGRE
KAPAAFCRKAVGSTEHFEVWGDGEQTRSFMYVDDCVEGVLRIMMSETAVK
PLNLGTEEMVSMNKFAEIAMSFENKYLPIKHIPGPQGVRGRNSDNTLIRE
ELGWEPLISIQEGLRETYFWIKGQIEKERAAGIVFDYSSSKVVVQTTDSL
DALGGKEKGLVSSIPESDLASNSNAGIQVIA*
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mRNA from alignment at chr16:222289..223981-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00630.1 ID=NO16G00630.1|Name=NO16G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1693bp|location=Sequence derived from alignment at chr16:222289..223981- (Nannochloropsis oceanica)
CACTTTACAGCAAAGCAACAATGAGCAACTCCTCTACCCCTTTGGTGACA
GGCAAGAAAGTCCTGGTGGCCGGCGGCGGCGGCTTCATCGGCTCCCACCT
GGCCCGTCGTCTCAAGAAGGACGGGAACTATGTCGTGGTGGCCGACTGGA
AGCGCAACGAATTCATGACAGAGCCCGAGTTCTGCGATGAGTTTCTCCAA
GTCGATTTGCGGGAACTTGACAACTGCATCAAGGCTTCCAAGGGCTGCAA
CCACGTGTACAATTTAGCTGCAGACATGGGCGGAATGGGCTTCATCGAGT
CCAATCAGTCCGTGCTCATGTGGAACAACACCATGGTCTCCTCCAATGTC
CTTGAGGCCGCGCGTCGTAATGGCGCTGAGCGTTATTTCTACTCCTCGAC
GGCTTGTGTTTACAACGAGGATCTGCAGCTTGACCCGTCCAATCCCGGGT
TGAAGGAGGCGGATGCCTGGCCCGCCAAGCCGCAAGAGGTGTACGGGCTT
GAAAAGCTTTACCATGAAGAAATGGCACTGGCGTACTCCCGGGACTTCCC
CATGGTGTCGCGCATTGCTCGGTAAGTTTGACACAGGAGAGGAGGGGAAA
GAGGGGATGACGGAATGTGTATGGTCCTTTCTAGTCAAAGAGACTTGCCC
GGAAGCATCATCACTGTCAATTGTGTTCATCATTGACATTTTCGTAGGAT
GCTTCGTCTTGTCAATATTTCGCGCAGCTTTTCACCATCCCTTCCTCCCA
TTCTCCCCCCCTCTCAGATTCCACAATGTCTACGGCCCATTCGGCACCTG
GAAGGGCGGTCGTGAAAAGGCCCCGGCTGCCTTCTGCCGCAAGGCCGTGG
GGAGCACGGAGCACTTCGAAGTGTGGGGAGATGGGGAGCAGACGCGATCG
TTCATGTATGTCGATGATTGTGTGGAGGGAGTGTTGCGCATCATGATGAG
TGAGACGGCGGTCAAGCCCTTGAACCTCGGCACGGAAGAGATGGTGTCGA
TGAACAAATTTGCTGAGATTGCCATGAGCTTCGAAAACAAGTATTTGCCC
ATCAAGCACATCCCGGGCCCGCAAGGCGTGCGTGGACGTAACTCTGACAA
TACTCTCATTCGGGAGGAGCTTGGCTGGGAGCCTCTCATCTCAATTCAGG
AAGGCCTTCGCGAAACCTACTTTTGGATCAAGGGACAGATTGAGAAGGAG
CGCGCGGCCGGGATAGTGTTTGACTACTCTTCCTCTAAGGTGGTTGTCCA
GACGACGGATTCCCTGGATGCGCTGGGCGGGAAAGAGAAGGGGTTGGTGA
GCAGCATTCCGGAATCGGACTTGGCCAGCAATAGCAATGCCGGCATCCAG
GTGATTGCTTAGAAATTGCAAGGCGCGGCATGTAGAACGAGGGAAAGGTA
GGGAGGGGGGGAAGAATGGGATAAAGTAGTATGGCTAGCCGGCGAGAGAT
GCATGTTGAGATTGACGGAGGCCTCAGTCTCGATTCCAAGAAAATGAAGG
CAGAGGGGTAAGATTCAGATTGTATGTTGCATGTTCACACGCCTACGGTA
TGACGAGAGGAAGTCAAGAAGAGCCAAAAGCAATGTGACAATGCCGAGTA
TCACTCTGTGGCCATGGGTCAGGAAGGTACCTGTCCGTTAATGAATGTCA
ACAATCGAAAGTATGAAAGGGTAGTGGCATGCATGAAACCGTG
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Coding sequence (CDS) from alignment at chr16:222289..223981-

>NO16G00630.1 ID=NO16G00630.1|Name=NO16G00630.1|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at chr16:222289..223981- (Nannochloropsis oceanica)
ATGAGCAACTCCTCTACCCCTTTGGTGACAGGCAAGAAAGTCCTGGTGGC
CGGCGGCGGCGGCTTCATCGGCTCCCACCTGGCCCGTCGTCTCAAGAAGG
ACGGGAACTATGTCGTGGTGGCCGACTGGAAGCGCAACGAATTCATGACA
GAGCCCGAGTTCTGCGATGAGTTTCTCCAAGTCGATTTGCGGGAACTTGA
CAACTGCATCAAGGCTTCCAAGGGCTGCAACCACGTGTACAATTTAGCTG
CAGACATGGGCGGAATGGGCTTCATCGAGTCCAATCAGTCCGTGCTCATG
TGGAACAACACCATGGTCTCCTCCAATGTCCTTGAGGCCGCGCGTCGTAA
TGGCGCTGAGCGTTATTTCTACTCCTCGACGGCTTGTGTTTACAACGAGG
ATCTGCAGCTTGACCCGTCCAATCCCGGGTTGAAGGAGGCGGATGCCTGG
CCCGCCAAGCCGCAAGAGGTGTACGGGCTTGAAAAGCTTTACCATGAAGA
AATGGCACTGGCGTACTCCCGGGACTTCCCCATGGTGTCGCGCATTGCTC
GATTCCACAATGTCTACGGCCCATTCGGCACCTGGAAGGGCGGTCGTGAA
AAGGCCCCGGCTGCCTTCTGCCGCAAGGCCGTGGGGAGCACGGAGCACTT
CGAAGTGTGGGGAGATGGGGAGCAGACGCGATCGTTCATGTATGTCGATG
ATTGTGTGGAGGGAGTGTTGCGCATCATGATGAGTGAGACGGCGGTCAAG
CCCTTGAACCTCGGCACGGAAGAGATGGTGTCGATGAACAAATTTGCTGA
GATTGCCATGAGCTTCGAAAACAAGTATTTGCCCATCAAGCACATCCCGG
GCCCGCAAGGCGTGCGTGGACGTAACTCTGACAATACTCTCATTCGGGAG
GAGCTTGGCTGGGAGCCTCTCATCTCAATTCAGGAAGGCCTTCGCGAAAC
CTACTTTTGGATCAAGGGACAGATTGAGAAGGAGCGCGCGGCCGGGATAG
TGTTTGACTACTCTTCCTCTAAGGTGGTTGTCCAGACGACGGATTCCCTG
GATGCGCTGGGCGGGAAAGAGAAGGGGTTGGTGAGCAGCATTCCGGAATC
GGACTTGGCCAGCAATAGCAATGCCGGCATCCAGGTGATTGCTTAG
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Synonyms
Publications