NO16G00330.1, NO16G00330.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO16G00330.1
Unique Name	NO16G00330.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1500
Alignment location	chr16:122135..124974 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr16	genome	chr16:122135..124974 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO16G00330.1 vs.
Match: GAX93204.1 (TKL protein kinase [Pythium insidiosum])

HSP 1 Score: 278.5 bits (711), Expect = 2.600e-71
Identity = 129/253 (50.99%), Postives = 177/253 (69.96%), Query Frame = 0

Query:    4 VGSGHSGSLWLATWKGTQVAVKMIKAPDEGSEKHERFLHDFERERSIVRGLRHPNLCRLYGVSSSPGGRTFCLVYDFLEGGSLAGLLRNRNRPYDLFSIALDVAEGMDYLHRRGVMHRDLKPDNLLLNKQGRAVIADFGLVCPTISEADH--TGETGTYRYMSAEVIRHEPYSTAADVYSYGIVLWELLTREQPFRGMTPIQAAFAVARQGHRPPLPPRTPPKLAKLIQMCWHDDPIRRPTFSQVVVALKEIR 255
            VG+G SG+ + A W+GT+VAVK++ A  + +   E  L++F RE ++V  LRHPN+    G + SP    +CLV++F++ G+L  L+R+R  P D F +A ++A GM+YLH   +MHRDLK  N+LL+  G   I+DFGL C       H  T ETGTYR+M+ EVIRHEPYST ADVYS+G+VLWE++ ++QPFRG+TPIQAAFAVARQ  RP LP  TP K+ +L++ CWH DP RRP FS ++ AL  ++
Sbjct:  471 VGTGRSGNTYSALWRGTRVAVKVVDASAQNAAMSEDLLNEFHREVAVVSKLRHPNIVLFLGAAISPP--KYCLVFEFMQNGTLTDLIRSRKAPIDFFRVATEIAMGMNYLHLCSIMHRDLKSGNVLLDAHGTVKISDFGLSCVLDMSGSHDLTAETGTYRWMAPEVIRHEPYSTKADVYSFGVVLWEMIAKDQPFRGLTPIQAAFAVARQQMRPALPRHTPLKIGELVEHCWHQDPNRRPDFSAILEALPLVK 721

The following BLAST results are available for this feature:

BLAST of NO16G00330.1 vs.

BLAST of NO16G00330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
GAX93204.1	2.600e-71	50.99	TKL protein kinase [Pythium insidiosum]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO16G00330	NO16G00330	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO16G00330.1	NO16G00330.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO16G00330.1.cds1	NO16G00330.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G00330.1.cds2	NO16G00330.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G00330.1.cds3	NO16G00330.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G00330.1.cds4	NO16G00330.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G00330.1.cds5	NO16G00330.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G00330.1.cds6	NO16G00330.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G00330.1.cds7	NO16G00330.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G00330.1.cds8	NO16G00330.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr16:122135..124974+
coding sequence from alignment at chr16:122135..124974+

mRNA sequence

>NO16G00330.1 ID=NO16G00330.1|Name=NO16G00330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1500bp
ATGGCAGTGGTGGGTAGTGGCCACTCGGGGAGTCTTTGGTTAGCCACGTG
GAAAGGCACACAGGTCGCTGTCAAAATGATCAAGGCTCCCGACGAAGGCA
GCGAGAAGCACGAGCGTTTCCTCCATGATTTTGAGAGAGAACGCAGCATT
GTCCGAGGCCTCCGTCATCCTAACCTCTGCCGCCTCTACGGTGTTTCCTC
CTCTCCTGGCGGGCGGACGTTCTGCCTAGTCTATGATTTTCTAGAGGGCG
GCTCGCTGGCCGGGCTGTTGAGGAATCGCAACCGGCCCTACGACTTGTTT
TCCATTGCTTTAGACGTGGCGGAGGGCATGGACTACCTCCATCGACGAGG
GGTCATGCACCGCGATCTCAAGCCCGATAACCTCCTCCTCAACAAGCAAG
GGCGCGCCGTCATCGCCGATTTCGGTCTTGTCTGCCCCACCATCTCCGAG
GCTGACCATACAGGGGAGACGGGCACTTACCGCTACATGTCTGCAGAGGT
CATCCGTCACGAGCCCTACTCCACCGCCGCCGATGTGTACTCGTACGGCA
TCGTCCTCTGGGAGCTTCTGACGCGGGAGCAGCCGTTCAGAGGCATGACC
CCCATCCAGGCTGCCTTTGCGGTGGCGCGGCAGGGCCATCGCCCGCCCCT
CCCTCCTCGCACACCACCCAAGCTCGCGAAGCTCATCCAAATGTGCTGGC
ATGACGATCCGATCCGCCGGCCCACTTTCAGTCAGGTAGTGGTGGCCCTG
AAAGAGATACGACGGGAGATCTATGGAGAGGCAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGGGCAGCAACAGCAACAGCAGCATCTCCACCA
CCACCGCCCACCCCGTCGCAGCAGCAGCAGCAGCAATACTAGCCGTTGAC
CTGCCAGCAGGCAGAAAGCCAACGCTTTGAAAAATGTTGATTGGAAGGTT
AAGGAGGGCGAGAAGGAAAGGGAGGAGAAGGAGGAGGGAGGGTGAGAAAA
AGAGAGGAGAAGCATGATTTCCACCGTCGTCGTGATCCCGGCAAGAGTAG
CAGCAATGACGAAGGAGGGAGGGAGGGAGTCAATCTTTGTCTTTGGAGAA
GAAACAGCAGCAACAGCAGCAGTGAAAGAGACACAGCAGCATACGACCAC
AGCATCACCAGCTAGGCTCGAACAGCGAGTGAGCGAGGTACAAATAGACA
GATAGAGCAGCCGCAGTAGCGGCAGCAACTGCAGCAACGAGGAGCAGGAG
AACAAGATGAAAATGAGCGGGAAGAAAAGATGGAAGATGAAAAGGAGAAA
GAAGAGGAAGAGAAAGACAGGGAGAAGAAGGTAAGAAAATAGAGAAAACA
AGGAAAACAACACCAAGGAGAAGAAGAACTAGAAGAGCATGGAGAACAAG
AACAAGGAGAGCCATGGAAATAATAAGAAACACACACTGGAATAAGCTCA

protein sequence of NO16G00330.1

>NO16G00330.1-protein ID=NO16G00330.1-protein|Name=NO16G00330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MAVVGSGHSGSLWLATWKGTQVAVKMIKAPDEGSEKHERFLHDFERERSI
VRGLRHPNLCRLYGVSSSPGGRTFCLVYDFLEGGSLAGLLRNRNRPYDLF
SIALDVAEGMDYLHRRGVMHRDLKPDNLLLNKQGRAVIADFGLVCPTISE
ADHTGETGTYRYMSAEVIRHEPYSTAADVYSYGIVLWELLTREQPFRGMT
PIQAAFAVARQGHRPPLPPRTPPKLAKLIQMCWHDDPIRRPTFSQVVVAL
KEIRREIYGEAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAATATAASPP
PPPTPSQQQQQQY*

mRNA from alignment at chr16:122135..124974+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO16G00330.1 ID=NO16G00330.1|Name=NO16G00330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2840bp|location=Sequence derived from alignment at chr16:122135..124974+ (Nannochloropsis oceanica)
ATGGCAGTGGTGGGTAGTGGCCACTCGGGGAGTCTTTGGTTAGCCACGTG
GAAAGGCACACAGGTCGCTGTCAAAATGATCAAGGTACGACGATACCGCT
GTCCCTCCCTCCCTTCCTTCCTCCCTCCCTCCCATCCGTCTTCAACCCCC
ACCCCTTCCCTTTTTTCCTTGCCCTCCCTCCCTCCCTCCCTCCTTCCAGG
CTCCCGACGAAGGCAGCGAGAAGCACGAGCGTTTCCTCCATGATTTTGAG
AGAGAACGCAGCATTGTCCGAGGCCTCCGTCATCCTAACCTCTGCCGCCT
CTACGGTGTTTCCTCCTCTCCTGGTACGCAATCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCTCCCTCGGTGTCCTGCTGGGGTAATGGACGA
TAGGGGCCTTTCTTTTTCGGGGGTCCTCCCTCCCTCCCTCCCTCCCTCGG
GCCCTTCCTCCTTTCCTACTTTCCTCCCTCGCTGTTTCCCTCCCTCCCTC
CTTCCCTCCCCCTCTCTGTTCGACATGGTCGGGTCTAACCTCTCCGTTTC
TCCTCCTTCCCTCCCTTCCCCCCTCCCTCCCCCCCTCCTTCCGCAGGCGG
GCGGACGTTCTGCCTAGTCTATGATTTTCTAGAGGGCGGCTCGCTGGCCG
GGCTGTTGAGGAATCGGTGCGTGGCATGGAGGGAGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAAAGAGGAGAGATGGGACATGGCTTTGTGAGATGCA
CGACTTGACTTGTGTTTGTCGTCCCCTCCCTCCCTCCCTCCCCCCCTCCA
CCCCTCAAGCAACCGGCCCTACGACTTGTTTTCCATTGCTTTAGACGTGG
CGGAGGGCATGGACTACCTCCATCGACGAGGGGTCATGCACCGCGATCTC
AAGGTACCTCCCTCCCTCCCTCCCTCCCTACCTCCCTTCCCCTCCCCTCC
CTTTTTTCCTCTGGTATCGTCTTATAACTCTCCCTCCCTCCCTCTCTCCC
TCTCTCCCTCCTTTAAGCCCGATAACCTCCTCCTCAACAAGCAAGGGCGC
GCCGTCATCGCCGATTTCGGTCTTGTCTGCCCCACCATCTCCGAGGCTGA
CCATACAGGTCGGTCGGGAGGCAGGGAGGGAGGCAGGGAGGGAGGAAAGG
GTTGTTTTACTCATTCTTCGCATCTTACCTTGTCGTGCCTGGAGCCTCTT
TCTTCCTTTCTTGATTACTACGGGGGAGGGAGGGAGGGAGGGACGGACGG
AGGGAGAGAGGGTGTCGTGTTGGGCTGTACATATTATCATCGTGTTGGTA
TCTGCAACACTGTAGCGCCTTTTCGATCATTTTTCTCCTTCTGACACCCC
TCATTCTCGTCCTTCTTACACTCCTCATTCTCTCTCGTCCGTATTGCTGT
TTCTCGTCCACACAGGGGAGACGGGCACTTACCGCTACATGTCTGCAGAG
GTCATCCGTCACGAGGTGCGCCTCGAAGAAGGGGGGGAAGGAGGGGGAGG
GAGGAGTAGACTTACCTATTCACCCTCCATGCGTTTCAATTAATTTCTTC
TTTCCCTTCCTCCAGGTCCACTCCCCATGAGATCCTTCTGCAAGTTGGCA
CTTACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGCC
CTACTCCACCGCCGCCGATGTGTACTCGTACGGCATCGTCCTCTGGGAGC
TTCTGACGCGGGAGCAGCCGTTCAGAGGCATGACCCCCATCCAGGCTGCC
TTTGCGGTGGCGCGGCAGGGTAGGGAGGGGGGGAGGGAAGAAGGGTGGGA
GGAAAGGAGGGATGCTATCCGGCATGTGGGAGCTACAGGCCTGAGAGCTG
CCTCAGTCATTCTCTCGGTGATTCATCCAAATAGATTATATCAGGCTCAG
ATCATACCTCCCTCCCCTCCCTCCCCTCCCTCCCTTCCTCCCTCCCTCCC
TCTCTCCCTCCCTCCCTCCCTCAGGCCATCGCCCGCCCCTCCCTCCTCGC
ACACCACCCAAGCTCGCGAAGCTCATCCAAATGTGCTGGCATGACGATCC
GATCCGCCGGCCCACTTTCAGTCAGGTAGTGGTGGCCCTGAAAGAGATAC
GACGGGAGATCTATGGAGAGGCAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGGGCAGCAACAGCAACAGCAGCATCTCCACCACCACCGCCCA
CCCCGTCGCAGCAGCAGCAGCAGCAATACTAGCCGTTGACCTGCCAGCAG
GCAGAAAGCCAACGCTTTGAAAAATGTTGATTGGAAGGTTAAGGAGGGCG
AGAAGGAAAGGGAGGAGAAGGAGGAGGGAGGGTGAGAAAAAGAGAGGAGA
AGCATGATTTCCACCGTCGTCGTGATCCCGGCAAGAGTAGCAGCAATGAC
GAAGGAGGGAGGGAGGGAGTCAATCTTTGTCTTTGGAGAAGAAACAGCAG
CAACAGCAGCAGTGAAAGAGACACAGCAGCATACGACCACAGCATCACCA
GCTAGGCTCGAACAGCGAGTGAGCGAGGTACAAATAGACAGATAGAGCAG
CCGCAGTAGCGGCAGCAACTGCAGCAACGAGGAGCAGGAGAACAAGATGA
AAATGAGCGGGAAGAAAAGATGGAAGATGAAAAGGAGAAAGAAGAGGAAG
AGAAAGACAGGGAGAAGAAGGTAAGAAAATAGAGAAAACAAGGAAAACAA
CACCAAGGAGAAGAAGAACTAGAAGAGCATGGAGAACAAGAACAAGGAGA
GCCATGGAAATAATAAGAAACACACACTGGAATAAGCTCA

Coding sequence (CDS) from alignment at chr16:122135..124974+

>NO16G00330.1 ID=NO16G00330.1|Name=NO16G00330.1|organism=Nannochloropsis oceanica|type=CDS|length=942bp|location=Sequence derived from alignment at chr16:122135..124974+ (Nannochloropsis oceanica)
ATGGCAGTGGTGGGTAGTGGCCACTCGGGGAGTCTTTGGTTAGCCACGTG
GAAAGGCACACAGGTCGCTGTCAAAATGATCAAGGCTCCCGACGAAGGCA
GCGAGAAGCACGAGCGTTTCCTCCATGATTTTGAGAGAGAACGCAGCATT
GTCCGAGGCCTCCGTCATCCTAACCTCTGCCGCCTCTACGGTGTTTCCTC
CTCTCCTGGCGGGCGGACGTTCTGCCTAGTCTATGATTTTCTAGAGGGCG
GCTCGCTGGCCGGGCTGTTGAGGAATCGCAACCGGCCCTACGACTTGTTT
TCCATTGCTTTAGACGTGGCGGAGGGCATGGACTACCTCCATCGACGAGG
GGTCATGCACCGCGATCTCAAGCCCGATAACCTCCTCCTCAACAAGCAAG
GGCGCGCCGTCATCGCCGATTTCGGTCTTGTCTGCCCCACCATCTCCGAG
GCTGACCATACAGGGGAGACGGGCACTTACCGCTACATGTCTGCAGAGGT
CATCCGTCACGAGCCCTACTCCACCGCCGCCGATGTGTACTCGTACGGCA
TCGTCCTCTGGGAGCTTCTGACGCGGGAGCAGCCGTTCAGAGGCATGACC
CCCATCCAGGCTGCCTTTGCGGTGGCGCGGCAGGGCCATCGCCCGCCCCT
CCCTCCTCGCACACCACCCAAGCTCGCGAAGCTCATCCAAATGTGCTGGC
ATGACGATCCGATCCGCCGGCCCACTTTCAGTCAGGTAGTGGTGGCCCTG
AAAGAGATACGACGGGAGATCTATGGAGAGGCAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGGGCAGCAACAGCAACAGCAGCATCTCCACCA
CCACCGCCCACCCCGTCGCAGCAGCAGCAGCAGCAATACTAG

Synonyms

Publications