NO16G00240.1, NO16G00240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00240.1
Unique NameNO16G00240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length741
Alignment locationchr16:90916..92876 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:90916..92876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00240.1 vs.
Match: OQS05730.1 (adenylate kinase [Thraustotheca clavata])

HSP 1 Score: 328.2 bits (840), Expect = 2.200e-86
Identity = 151/239 (63.18%), Postives = 193/239 (80.75%), Query Frame = 0 
Query:    8 ANLAKVSTEHLIEEIQRRLHCAGKQEKKTIFIGPPGSGKGTQAPIIKEEYCLCHLSTGDMLRAAVKAGTELGKAAKEIMDKGGLVPDELVVGLIRDNLSNPECQKGFILDGFPRTVGQAQKLDKMLAAKREGIDKVVDLVIDDDLLLKRITGRLIHPSSGRSYNIYFNPPKVEGKDDLTGEPLIHRSDDQASALKNRLKAFHKDTKPVVDYYAKQGKVATINANQNMSKVTADIRASLG 247
            A+LA V T+ L+EE+++R+ CA K+E++TIFIGPPG GKGTQ+PIIK+EYCLCHL+TGDMLRAAV+ GT++GK AK  M+ G LV DE+V+G+I+D + NPEC++GFILDGFPRTV QAQKLD+MLA     +DKV++  I D +L++RI GR IH SSGRSY++ FNPPKVEG DD+TGEPLI R DD  + L  RL AFHK T+PV+DYYAKQGK+  ++AN NM  VT  IR+S+G
Sbjct:    6 ASLAAVPTKSLLEELEKRMECAAKKERRTIFIGPPGCGKGTQSPIIKDEYCLCHLATGDMLRAAVRDGTDMGKKAKAAMESGALVTDEIVIGIIKDAIKNPECRRGFILDGFPRTVVQAQKLDEMLADTNTQVDKVINFNIPDQVLVERIAGRRIHVSSGRSYHVKFNPPKVEGIDDVTGEPLIQRKDDNVATLSTRLDAFHKQTQPVIDYYAKQGKLVEVDANINMDSVTGQIRSSMG 244
The following BLAST results are available for this feature:
BLAST of NO16G00240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OQS05730.12.200e-8663.18adenylate kinase [Thraustotheca clavata][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00240NO16G00240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00240.1NO16G00240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00240.1.cds1NO16G00240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00240.1.cds2NO16G00240.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00240.1.cds3NO16G00240.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00240.1.cds4NO16G00240.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00240.1.cds5NO16G00240.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00240.1.cds6NO16G00240.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00240.1.cds7NO16G00240.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00240.1 ID=NO16G00240.1|Name=NO16G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=741bp
ATGCAGTCCGTACAAGACATGGCCAACCTTGCGAAGGTCTCGACGGAGCA
CCTAATTGAGGAAATTCAGCGTCGCTTGCATTGCGCTGGGAAGCAGGAGA
AGAAGACCATCTTCATCGGCCCCCCGGGGTCCGGGAAGGGCACTCAAGCT
CCGATTATTAAAGAGGAGTATTGCTTGTGTCACTTGTCAACGGGGGACAT
GCTCCGCGCGGCGGTCAAGGCGGGCACGGAGCTGGGGAAAGCGGCCAAGG
AGATAATGGACAAAGGCGGCCTGGTGCCGGACGAGCTGGTGGTGGGATTG
ATCAGAGACAATCTCAGCAACCCGGAGTGCCAGAAGGGCTTCATCTTGGA
CGGATTCCCGCGCACGGTTGGACAGGCGCAAAAGCTGGACAAGATGCTTG
CCGCAAAGAGGGAGGGTATTGACAAGGTGGTGGACCTGGTGATCGACGAC
GACCTCCTCCTCAAGCGCATCACGGGCCGGCTGATCCATCCCTCCTCGGG
GCGGTCTTACAACATCTACTTCAACCCGCCTAAGGTCGAGGGCAAGGACG
ATTTAACGGGCGAGCCCCTCATCCACCGCTCGGACGATCAGGCTTCGGCC
CTGAAGAATCGTCTGAAGGCCTTTCACAAGGACACGAAGCCAGTAGTAGA
CTACTACGCCAAGCAGGGCAAAGTGGCCACCATTAACGCGAACCAAAATA
TGTCCAAGGTCACCGCCGACATCCGCGCCTCCCTGGGCTAA
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protein sequence of NO16G00240.1

>NO16G00240.1-protein ID=NO16G00240.1-protein|Name=NO16G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MQSVQDMANLAKVSTEHLIEEIQRRLHCAGKQEKKTIFIGPPGSGKGTQA
PIIKEEYCLCHLSTGDMLRAAVKAGTELGKAAKEIMDKGGLVPDELVVGL
IRDNLSNPECQKGFILDGFPRTVGQAQKLDKMLAAKREGIDKVVDLVIDD
DLLLKRITGRLIHPSSGRSYNIYFNPPKVEGKDDLTGEPLIHRSDDQASA
LKNRLKAFHKDTKPVVDYYAKQGKVATINANQNMSKVTADIRASLG*
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mRNA from alignment at chr16:90916..92876+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00240.1 ID=NO16G00240.1|Name=NO16G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1961bp|location=Sequence derived from alignment at chr16:90916..92876+ (Nannochloropsis oceanica)
ATGCAGTCCGTACAAGACATGGCCAACCTTGCGAAGGTCTCGACGGAGCA
CCTAATTGAGGAAATTCAGCGTCGCTTGCATTGCGCTGGGAAGCAGGAGA
AGAAGACCATCTTCATCGGTACGCAGTGCGCGAGGGGATAAAAGGAGGAC
TTAAGAGACGAAAGGGGCAAGGAGCACCAAAAAGAAGTATATTAGGCTGT
GTTTATGCGCTTGATTACCATTTCAAGTGAATAAGTATAGGCATGAGTTG
ACTGAGCTCCTCTTTCTCGCTCTCCTCCCTCCCTCCCTCCGTCCCCTCCG
TCTCCTCGCTCTCCCTCAGGCCCCCCGGGGTCCGGGAAGGGCACTCAAGC
TCCGATTATTAAAGAGGAGTATTGCTTGTGTCACTTGTCAACGGGGGACA
TGCTCCGCGCGGCGGTCAAGGCGGGCACGGAGCTGGGGAAAGCGGCCAAG
GAGATAATGGACAAAGGTGGGGGAGGGAGGGAGGGAAGGAGGTTAACTAG
AGTGTATGCATGACTCAATGACTTAACTCCGCTGCAAGTAATGTAGACGA
GGAAATGATGGCTCTTGTACGCACATATGCTTTCAAGCCATGTGCACTGG
TATTTATAATTTCCCTCCCTCCCATCTTCCATCCGTCCGTCCGTCCGTCC
CTCCCTCCCTCCTTCCCTTCGGCAGGCGGCCTGGTGCCGGACGAGCTGGT
GGTGGGATTGATCAGAGACAATCTCAGCAACCCGGAGTGCCAGAAGGGCT
TCATCTTGGACGGATTCCCGCGCACGGTTGGACAGGCGCAAAAGGTGAGA
GGGATCCCTGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGAGAG
GAGTTGCGATTTTTAATCAGGGCAGAATTCACAAGAGAAGAGAAAGCGTC
ATCTTACAATGCTCCCTCCCTCCCTCCTTTAATTTGCAGCTGGACAAGAT
GCTTGCCGCAAAGAGGGAGGGTATTGACAAGGTGGTGGACCTGGTGATCG
ACGACGACCTCCTCCTCAAGCGCATCACGGGCCGGTACGCCCTTCCCTCC
CTCCCTCCTCCCTCCCTTCCTCCTCCCTCCCTCCCTCTCTGCCCCCCTTC
CTCCTTTTCTCTCTTGAACCCCTCCCTATGTCAGAAATCTCCCTATTCCC
CTATTCCCCTTCCATTTCACGAATCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCAGGCTGATCCATCCCTCCTCGGGGCGGTCTTACAACATCTACT
TCAACCCGCCTAAGGTCGAGGGCAAGGACGATGTGCGTAGGAAAGGGGGA
AGGGAGGGAAGGAGGGAGGGAGGGATGGAAGGAGGTAGCGAGGGAGGGAA
GGAGACAGAGCCATCATAATAAGCATGTTGGACAAGTTTATCACGCTCCC
TTTCCCCACGTGTCTGCGTCCGTCCGTCCGTCCGCCCGTCCCTCCCTCCC
TCCCTCCTCCCTTCCATTCCCCAGTCGCACTTCGAGCAACGATCCTCTCT
ATTTAAGCGACGAGCCAACGACCGGCCTTGTTCGGCCGCGTCGAAGGAAC
TCGCGCTGACCCTCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
TGCAGTTAACGGGCGAGCCCCTCATCCACCGCTCGGACGATCAGGCTTCG
GCCCTGAAGAATCGTCTGAAGGCCTTTCACAAGGACACGAAGCCAGTAGT
AGACTACTACGCCAAGCAGGTGGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAAGGGTGTATCTACAGACAGGTCTTCACCTTGTCTCTGCTTCGCGCC
CTTTGTTCACAACCACCTTCCCTCCCTCTCCTCCCTCTCCTCCCTCTCCT
CCCTCTCCTCCCTCCCTCCCTCTCTCTCTGGAACAGGGCAAAGTGGCCAC
CATTAACGCGAACCAAAATATGTCCAAGGTCACCGCCGACATCCGCGCCT
CCCTGGGCTAA
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Coding sequence (CDS) from alignment at chr16:90916..92876+

>NO16G00240.1 ID=NO16G00240.1|Name=NO16G00240.1|organism=Nannochloropsis oceanica|type=CDS|length=741bp|location=Sequence derived from alignment at chr16:90916..92876+ (Nannochloropsis oceanica)
ATGCAGTCCGTACAAGACATGGCCAACCTTGCGAAGGTCTCGACGGAGCA
CCTAATTGAGGAAATTCAGCGTCGCTTGCATTGCGCTGGGAAGCAGGAGA
AGAAGACCATCTTCATCGGCCCCCCGGGGTCCGGGAAGGGCACTCAAGCT
CCGATTATTAAAGAGGAGTATTGCTTGTGTCACTTGTCAACGGGGGACAT
GCTCCGCGCGGCGGTCAAGGCGGGCACGGAGCTGGGGAAAGCGGCCAAGG
AGATAATGGACAAAGGCGGCCTGGTGCCGGACGAGCTGGTGGTGGGATTG
ATCAGAGACAATCTCAGCAACCCGGAGTGCCAGAAGGGCTTCATCTTGGA
CGGATTCCCGCGCACGGTTGGACAGGCGCAAAAGCTGGACAAGATGCTTG
CCGCAAAGAGGGAGGGTATTGACAAGGTGGTGGACCTGGTGATCGACGAC
GACCTCCTCCTCAAGCGCATCACGGGCCGGCTGATCCATCCCTCCTCGGG
GCGGTCTTACAACATCTACTTCAACCCGCCTAAGGTCGAGGGCAAGGACG
ATTTAACGGGCGAGCCCCTCATCCACCGCTCGGACGATCAGGCTTCGGCC
CTGAAGAATCGTCTGAAGGCCTTTCACAAGGACACGAAGCCAGTAGTAGA
CTACTACGCCAAGCAGGGCAAAGTGGCCACCATTAACGCGAACCAAAATA
TGTCCAAGGTCACCGCCGACATCCGCGCCTCCCTGGGCTAA
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Synonyms
Publications