NO16G00210.1, NO16G00210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00210.1
Unique NameNO16G00210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2421
Alignment locationchr16:83452..86167 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:83452..86167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO16G00210.1 vs.
Match: XP_005853472.1 (salicylate hydroxylase [Nannochloropsis gaditana CCMP526]; EKU22886.1 salicylate hydroxylase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 689.5 bits (1778), Expect = 6.900e-195
Identity = 332/433 (76.67%), Postives = 380/433 (87.76%), Query Frame = 0 
Query:    9 PPIKDVIVVGAGIAGLAVANALRLKGLNVTVYERASKLNRQRGAGTGLSPNGQRCLHELGFSHDMILDISTPIQEHILCDGDRVLVRSDYPSRLYDKYHMPLTGTLRGGLVDMMAAPLLKVKALKCGQRVVNIEERPGTAKVTVTLASGKTHEADLVVGADGINSTLAPLLLGKAMDPPLYSGYSIFFGVIDDFHKQPQALPPADTKRLVDLVDHPAAIIQVLSPTKLFLVAGGAGAEKKLVWKFGYPNPTPPQRKEWAGAEGAVRKELQEYLDKKRETDRTDSTFPVIQSLLDRTSDARLLHFGLFSRGHKPYWHKGRTILIGDAAHATLPHVGQGANMALEDGIVLADCLEEHGFRNVEAALASFYAQRQERTKRIVDSSKAIGWLLDARTPMGVWMRNALLVGAMKMDWYMRFAEKEVIGGFMAGRGGAK 442
            P I+DV+VVGAGIAGLAVANALRLKG+NVTVYERAS+L+RQRGAGTGLSPNGQRCLH LGFSH+M+LD+STPI+EHILC+ DRVLVRSDYP RLY+KY MP+TGTLRGGLV+MMA PL K K+L CG+ V N+EERPGT K+ VTLASGKTHE DLVVGADGI+STLAPL+LGK MDPP+Y+G SIFFGVID+F K PQ+LPPADT +L  L+DHPAAI+QVL P KLFLVAGGAG+EKKLVWK  YP  TPP RKEWA AEG VRKE+Q YLD++R +    +T  VIQ LLDRTSDARLLHFGLFSR  K YWHK R +LIGDAAHATLPHVGQGANMALED +VLAD LE H FR+VEAAL+SFYA+R+ERTKRIV+SS+ +GW LDARTP+GVW+RNA+LVGAM+MDWY++FAEKEVIGGF+ GR  AK
Sbjct:   17 PKIQDVVVVGAGIAGLAVANALRLKGINVTVYERASQLDRQRGAGTGLSPNGQRCLHALGFSHEMVLDVSTPIREHILCNEDRVLVRSDYPWRLYEKYKMPITGTLRGGLVNMMAEPLRKSKSLHCGEAVTNVEERPGTGKIIVTLASGKTHETDLVVGADGIHSTLAPLVLGKEMDPPIYTGSSIFFGVIDNFQKGPQSLPPADTTQLAGLIDHPAAIVQVLGPIKLFLVAGGAGSEKKLVWKLSYPTQTPPMRKEWALAEGTVRKEVQAYLDERRNSGAKVATISVIQDLLDRTSDARLLHFGLFSRKEKAYWHKDRLVLIGDAAHATLPHVGQGANMALEDAVVLADALEAHDFRHVEAALSSFYARRRERTKRIVESSRVMGWFLDARTPVGVWLRNAVLVGAMRMDWYLKFAEKEVIGGFVLGRDDAK 449
The following BLAST results are available for this feature:
BLAST of NO16G00210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853472.16.900e-19576.67salicylate hydroxylase [Nannochloropsis gaditana C... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00210NO16G00210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00210.1NO16G00210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00210.1.cds1NO16G00210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00210.1.cds2NO16G00210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00210.1.cds3NO16G00210.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00210.1 ID=NO16G00210.1|Name=NO16G00210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2421bp
ACCAACAGCTCAATGACGACGCCTGCCCAAGACTCCCCTCCAATCAAGGA
CGTTATAGTTGTTGGTGCAGGGATCGCAGGTCTTGCCGTGGCCAATGCGC
TCCGGCTCAAGGGACTGAATGTTACGGTCTACGAGCGGGCTTCAAAACTC
AATCGACAGCGGGGGGCGGGCACCGGCCTCAGTCCCAACGGCCAGCGCTG
CCTCCACGAGCTAGGCTTTTCCCACGACATGATTCTGGACATCTCCACGC
CCATTCAAGAGCATATTCTGTGCGATGGTGACCGAGTGCTGGTGCGGTCT
GATTACCCGTCGCGATTGTATGACAAGTACCACATGCCTCTCACCGGCAC
GCTCCGAGGCGGACTAGTGGACATGATGGCCGCCCCTCTCCTGAAAGTGA
AGGCACTGAAATGTGGACAGAGAGTCGTCAATATCGAGGAACGACCGGGT
ACGGCCAAAGTGACCGTCACCCTAGCCTCAGGCAAAACCCACGAGGCTGA
TCTGGTGGTGGGCGCAGACGGCATCAACAGCACCCTGGCGCCCTTGCTAC
TGGGCAAGGCTATGGACCCGCCCTTATATTCGGGATATTCCATTTTCTTT
GGGGTCATTGATGACTTTCACAAGCAGCCACAAGCCTTGCCCCCGGCCGA
CACGAAACGCCTGGTCGACCTAGTTGATCATCCAGCAGCCATCATTCAGG
TCCTGAGCCCAACCAAGCTATTTCTCGTGGCGGGCGGAGCGGGCGCGGAG
AAGAAGCTGGTGTGGAAGTTTGGATACCCGAATCCCACGCCGCCACAACG
GAAGGAATGGGCCGGGGCCGAGGGCGCCGTCCGCAAGGAGCTTCAGGAAT
ACCTGGACAAGAAGCGCGAGACCGACAGGACTGACTCCACCTTTCCCGTC
ATTCAGAGCTTGCTTGATCGCACGAGCGACGCTCGCCTGTTGCACTTTGG
CTTGTTCTCGAGGGGACACAAGCCCTATTGGCATAAAGGCCGCACCATCC
TGATTGGCGATGCGGCCCATGCCACCTTGCCACACGTCGGGCAGGGTGCA
AACATGGCCTTAGAAGATGGCATTGTCCTGGCCGATTGCCTGGAGGAGCA
CGGTTTTCGGAATGTGGAGGCGGCGCTGGCCTCTTTCTACGCTCAACGGC
AAGAACGCACAAAGCGTATCGTGGACTCGAGCAAGGCCATAGGGTGGCTT
TTGGACGCCCGGACACCAATGGGTGTGTGGATGCGGAATGCACTCTTGGT
AGGCGCGATGAAGATGGATTGGTACATGAGGTTTGCTGAAAAGGAGGTCA
TAGGAGGATTCATGGCCGGCCGCGGCGGGGCGAAAAAAGAGGATTGAAAA
GCGGAAGGAAGACAAGGTTTAGTGTATGTGCCTGACCTGGAGATAGAGGT
AGGGATGGCCAATTATCTGTGACCTACTGTTGAATAAGTGACACAGTCAT
GTTGGCGTCTGCCGAACGTTCCCCAGCGGCAGCTACTCGACAACAAGGGG
GCAGGTGATGACGAATTGCTTCCCCCTGCCAGGGGTCGTCGGACAAGGCC
GCTCCAAGATGTTGCTAGACAAGGCTTTAAACCGACTGGTCATGGTGAGG
ATTTAACTGACCAGGTCCTGACTGTCTTGACGCGAGCGATTGGAGTGCGT
GGACTGCCCGTGCTGGAACACACGCAATTAAACACCTACACCGAGTGACG
GGTGGCATCTGCGTGAGCAGATGGAAGCACCGCTTACTACCACCGCTGGA
ATACACGCCATTGAAAGCTCATGCAATTGTCCCTATGGAAGGTACACGTA
CATATTGCCTATTCAGAAGGATGCTGCCTGCGGCAGGAACATGAACGCGG
TCACTAAAGCCCGTGTATTTAACAAATAAGCGCGAAGGGTAATAATGACG
TTACTTGCAGGAATAATTACACGAGAAGGAGTATTGAGCATTGGGGAAAA
TAGGGAGGATATCAAAATTAGTTTCCTTTCAGAGTAATGGTAAAATTGGT
CGTGAGATTGGAAAGTGAGGCAGAGAAGAAAGGAAGGAAGCAACGAAAGA
TGACATCACAAGTCGCCGTCTTCTTTGTACATTTCATTTGACCTAAGAGC
CTTCCTCCGATTTCCCACATGAAGAATTTCAATTCTTAGTCTTAAAATAC
TGTGTCCTTTTAACTCCCGTAACGACCAGATCCATCACACCACGTCTCTC
GATTTTAACTCCCTGAGGATGTTTCCATCGTCGTTCGACATGATCATCGC
TAAAATAAGCTCCACCTTCAACTCCTCCTCTTCCTTCCCAATCACGTACT
CAGATGTAGACTTTACCACATACGTGCCCCCGCCTGTGCCCCAATATCCC
GATTCTTCCTCGCATCCTTTGCTTGTCCCATCACATGCTTGTGTTCCTCC
CCCCCTACCCTTCTACCCCCC
back to top

protein sequence of NO16G00210.1

>NO16G00210.1-protein ID=NO16G00210.1-protein|Name=NO16G00210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MTTPAQDSPPIKDVIVVGAGIAGLAVANALRLKGLNVTVYERASKLNRQR
GAGTGLSPNGQRCLHELGFSHDMILDISTPIQEHILCDGDRVLVRSDYPS
RLYDKYHMPLTGTLRGGLVDMMAAPLLKVKALKCGQRVVNIEERPGTAKV
TVTLASGKTHEADLVVGADGINSTLAPLLLGKAMDPPLYSGYSIFFGVID
DFHKQPQALPPADTKRLVDLVDHPAAIIQVLSPTKLFLVAGGAGAEKKLV
WKFGYPNPTPPQRKEWAGAEGAVRKELQEYLDKKRETDRTDSTFPVIQSL
LDRTSDARLLHFGLFSRGHKPYWHKGRTILIGDAAHATLPHVGQGANMAL
EDGIVLADCLEEHGFRNVEAALASFYAQRQERTKRIVDSSKAIGWLLDAR
TPMGVWMRNALLVGAMKMDWYMRFAEKEVIGGFMAGRGGAKKED*
back to top

mRNA from alignment at chr16:83452..86167+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00210.1 ID=NO16G00210.1|Name=NO16G00210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2716bp|location=Sequence derived from alignment at chr16:83452..86167+ (Nannochloropsis oceanica)
ACCAACAGCTCAATGACGACGCCTGCCCAAGACTCCCCTCCAATCAAGGA
CGTTATAGTTGTTGGTGCAGGGATCGCAGGTCTTGCCGTGGCCAATGCGC
TCCGGCTCAAGGGACTGAATGTTACGGTCTACGAGCGGGCTTCAAAACTC
AATCGACAGCGGGGGGCGGGCACCGGCCTCAGTCCCAACGGCCAGCGCTG
CCTCCACGAGCTAGGCTTTTCCCACGACATGATTCTGGACATCTCCACGC
CCATTCAAGAGCATATTCTGTGCGATGGTGACCGAGTGCTGGTGCGGTCT
GATTACCCGTCGCGATTGTATGACAAGTACCACATGCCTCTCACCGGTAA
ATAGAAAAAAGGAGGGCAATAATGGGAGGAAGAGGGGAAAGGAGGACAGA
TGTGACCCTTCATCTCTCACATCATCATATTGTACCGCGTCTGCCCATGT
ATAATTTAAATTTCTTCCCTTGGAGCCTTGAGGAGTCTTAAATGAATGTT
GGCATTACATGTCTCATCCTCTCCATCTCCTCCCAAAGGCACGCTCCGAG
GCGGACTAGTGGACATGATGGCCGCCCCTCTCCTGAAAGTGAAGGCACTG
AAATGTGGACAGAGAGTCGTCAATATCGAGGAACGACCGGGTACGGCCAA
AGTGACCGTCACCCTAGCCTCAGGCAAAACCCACGAGGCTGATCTGGTAC
GTCTACTGGTGTTGTCTCATCTCTTTGTCCGCCATTGTGTGGAATCTAGG
CTCATTCCTGCTGATTTACCATACGTCCTTTTCACATTTGTTTTCGCAGG
TGGTGGGCGCAGACGGCATCAACAGCACCCTGGCGCCCTTGCTACTGGGC
AAGGCTATGGACCCGCCCTTATATTCGGGATATTCCATTTTCTTTGGGGT
CATTGATGACTTTCACAAGCAGCCACAAGCCTTGCCCCCGGCCGACACGA
AACGCCTGGTCGACCTAGTTGATCATCCAGCAGCCATCATTCAGGTCCTG
AGCCCAACCAAGCTATTTCTCGTGGCGGGCGGAGCGGGCGCGGAGAAGAA
GCTGGTGTGGAAGTTTGGATACCCGAATCCCACGCCGCCACAACGGAAGG
AATGGGCCGGGGCCGAGGGCGCCGTCCGCAAGGAGCTTCAGGAATACCTG
GACAAGAAGCGCGAGACCGACAGGACTGACTCCACCTTTCCCGTCATTCA
GAGCTTGCTTGATCGCACGAGCGACGCTCGCCTGTTGCACTTTGGCTTGT
TCTCGAGGGGACACAAGCCCTATTGGCATAAAGGCCGCACCATCCTGATT
GGCGATGCGGCCCATGCCACCTTGCCACACGTCGGGCAGGGTGCAAACAT
GGCCTTAGAAGATGGCATTGTCCTGGCCGATTGCCTGGAGGAGCACGGTT
TTCGGAATGTGGAGGCGGCGCTGGCCTCTTTCTACGCTCAACGGCAAGAA
CGCACAAAGCGTATCGTGGACTCGAGCAAGGCCATAGGGTGGCTTTTGGA
CGCCCGGACACCAATGGGTGTGTGGATGCGGAATGCACTCTTGGTAGGCG
CGATGAAGATGGATTGGTACATGAGGTTTGCTGAAAAGGAGGTCATAGGA
GGATTCATGGCCGGCCGCGGCGGGGCGAAAAAAGAGGATTGAAAAGCGGA
AGGAAGACAAGGTTTAGTGTATGTGCCTGACCTGGAGATAGAGGTAGGGA
TGGCCAATTATCTGTGACCTACTGTTGAATAAGTGACACAGTCATGTTGG
CGTCTGCCGAACGTTCCCCAGCGGCAGCTACTCGACAACAAGGGGGCAGG
TGATGACGAATTGCTTCCCCCTGCCAGGGGTCGTCGGACAAGGCCGCTCC
AAGATGTTGCTAGACAAGGCTTTAAACCGACTGGTCATGGTGAGGATTTA
ACTGACCAGGTCCTGACTGTCTTGACGCGAGCGATTGGAGTGCGTGGACT
GCCCGTGCTGGAACACACGCAATTAAACACCTACACCGAGTGACGGGTGG
CATCTGCGTGAGCAGATGGAAGCACCGCTTACTACCACCGCTGGAATACA
CGCCATTGAAAGCTCATGCAATTGTCCCTATGGAAGGTACACGTACATAT
TGCCTATTCAGAAGGATGCTGCCTGCGGCAGGAACATGAACGCGGTCACT
AAAGCCCGTGTATTTAACAAATAAGCGCGAAGGGTAATAATGACGTTACT
TGCAGGAATAATTACACGAGAAGGAGTATTGAGCATTGGGGAAAATAGGG
AGGATATCAAAATTAGTTTCCTTTCAGAGTAATGGTAAAATTGGTCGTGA
GATTGGAAAGTGAGGCAGAGAAGAAAGGAAGGAAGCAACGAAAGATGACA
TCACAAGTCGCCGTCTTCTTTGTACATTTCATTTGACCTAAGAGCCTTCC
TCCGATTTCCCACATGAAGAATTTCAATTCTTAGTCTTAAAATACTGTGT
CCTTTTAACTCCCGTAACGACCAGATCCATCACACCACGTCTCTCGATTT
TAACTCCCTGAGGATGTTTCCATCGTCGTTCGACATGATCATCGCTAAAA
TAAGCTCCACCTTCAACTCCTCCTCTTCCTTCCCAATCACGTACTCAGAT
GTAGACTTTACCACATACGTGCCCCCGCCTGTGCCCCAATATCCCGATTC
TTCCTCGCATCCTTTGCTTGTCCCATCACATGCTTGTGTTCCTCCCCCCC
TACCCTTCTACCCCCC
back to top

Coding sequence (CDS) from alignment at chr16:83452..86167+

>NO16G00210.1 ID=NO16G00210.1|Name=NO16G00210.1|organism=Nannochloropsis oceanica|type=CDS|length=1335bp|location=Sequence derived from alignment at chr16:83452..86167+ (Nannochloropsis oceanica)
ATGACGACGCCTGCCCAAGACTCCCCTCCAATCAAGGACGTTATAGTTGT
TGGTGCAGGGATCGCAGGTCTTGCCGTGGCCAATGCGCTCCGGCTCAAGG
GACTGAATGTTACGGTCTACGAGCGGGCTTCAAAACTCAATCGACAGCGG
GGGGCGGGCACCGGCCTCAGTCCCAACGGCCAGCGCTGCCTCCACGAGCT
AGGCTTTTCCCACGACATGATTCTGGACATCTCCACGCCCATTCAAGAGC
ATATTCTGTGCGATGGTGACCGAGTGCTGGTGCGGTCTGATTACCCGTCG
CGATTGTATGACAAGTACCACATGCCTCTCACCGGCACGCTCCGAGGCGG
ACTAGTGGACATGATGGCCGCCCCTCTCCTGAAAGTGAAGGCACTGAAAT
GTGGACAGAGAGTCGTCAATATCGAGGAACGACCGGGTACGGCCAAAGTG
ACCGTCACCCTAGCCTCAGGCAAAACCCACGAGGCTGATCTGGTGGTGGG
CGCAGACGGCATCAACAGCACCCTGGCGCCCTTGCTACTGGGCAAGGCTA
TGGACCCGCCCTTATATTCGGGATATTCCATTTTCTTTGGGGTCATTGAT
GACTTTCACAAGCAGCCACAAGCCTTGCCCCCGGCCGACACGAAACGCCT
GGTCGACCTAGTTGATCATCCAGCAGCCATCATTCAGGTCCTGAGCCCAA
CCAAGCTATTTCTCGTGGCGGGCGGAGCGGGCGCGGAGAAGAAGCTGGTG
TGGAAGTTTGGATACCCGAATCCCACGCCGCCACAACGGAAGGAATGGGC
CGGGGCCGAGGGCGCCGTCCGCAAGGAGCTTCAGGAATACCTGGACAAGA
AGCGCGAGACCGACAGGACTGACTCCACCTTTCCCGTCATTCAGAGCTTG
CTTGATCGCACGAGCGACGCTCGCCTGTTGCACTTTGGCTTGTTCTCGAG
GGGACACAAGCCCTATTGGCATAAAGGCCGCACCATCCTGATTGGCGATG
CGGCCCATGCCACCTTGCCACACGTCGGGCAGGGTGCAAACATGGCCTTA
GAAGATGGCATTGTCCTGGCCGATTGCCTGGAGGAGCACGGTTTTCGGAA
TGTGGAGGCGGCGCTGGCCTCTTTCTACGCTCAACGGCAAGAACGCACAA
AGCGTATCGTGGACTCGAGCAAGGCCATAGGGTGGCTTTTGGACGCCCGG
ACACCAATGGGTGTGTGGATGCGGAATGCACTCTTGGTAGGCGCGATGAA
GATGGATTGGTACATGAGGTTTGCTGAAAAGGAGGTCATAGGAGGATTCA
TGGCCGGCCGCGGCGGGGCGAAAAAAGAGGATTGA
back to top
Synonyms
Publications