NO15G03440.1, NO15G03440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G03440.1
Unique NameNO15G03440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1592
Alignment locationchr15:991811..995390 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:991811..995390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G03440.1 vs.
Match: EWM22250.1 (aspartic protease [Nannochloropsis gaditana])

HSP 1 Score: 629.0 bits (1621), Expect = 9.300e-177
Identity = 305/353 (86.40%), Postives = 327/353 (92.63%), Query Frame = 0 
Query:   21 VRIPLTRRPANQVIDSILQHPQQALQSTGEPGEGDIIISDVSNAQYFGEINVGSQGQTFEVIFDTGSSNLWIPSLDCATSCAAKSKYDHDDSDTYVENGAEFKIMYGSGPVQGYFSEDNVELGGLTIEQQAFAEVTDASGLGAAFMAGSFDGILGLAFDSISVGKVTTPFHNMIKQGLLAEPVFSFYLGDNAPGELTLGGIDPAHYRGNIHHVPLKSATYWEIELDDVQVEGMSLTSTHSAIVDSGTSLITGPKKEISKLAKQVGATRFLKGEYLIDCDAQGPDIDFVIDGRTYSLSADDYKIRNGGLCLFAFMGLDIPRPSGPLWILGDSFMRRYYTTFNYEKQTVGFAQAA 374
            +RIPL RRPA QVIDSIL HPQ+ LQ T EPGEGDIIISDVSNAQYFGEI+VGS  Q F+VIFDTGSSNLWIPS DC  SCA+K+KYDHD SDTYVENGA FKIMYGSGPVQGYFSED+VELGGLTI QQAFAEVTDASGLGAAF AGSFDGILGL FDSISVGKVTTPFHN+IKQGL+AEPVFSFYLGDNAPGELTLGG DPAHY+G+IH+VPLKSATYWE+ L+DVQV G+SLT+  SAI+DSGTSLITGPKKE++KLAK VGATRF+ GEYLIDC+AQGPDIDFVIDGRTYSLSADDYKIR+GGLCLFAFMGLDIPRPSGPLWILGDSFMRRYYTTFNYEKQTVG A AA
Sbjct:   21 LRIPLKRRPAAQVIDSILAHPQRPLQGTDEPGEGDIIISDVSNAQYFGEISVGSDRQAFQVIFDTGSSNLWIPSEDCLASCASKAKYDHDASDTYVENGAIFKIMYGSGPVQGYFSEDDVELGGLTISQQAFAEVTDASGLGAAFAAGSFDGILGLGFDSISVGKVTTPFHNLIKQGLVAEPVFSFYLGDNAPGELTLGGTDPAHYKGDIHYVPLKSATYWEVALEDVQVHGLSLTNVDSAIIDSGTSLITGPKKEVAKLAKLVGATRFILGEYLIDCNAQGPDIDFVIDGRTYSLSADDYKIRDGGLCLFAFMGLDIPRPSGPLWILGDSFMRRYYTTFNYEKQTVGLALAA 373
The following BLAST results are available for this feature:
BLAST of NO15G03440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22250.19.300e-17786.40aspartic protease [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G03440NO15G03440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G03440.1NO15G03440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G03440.1.cds1NO15G03440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03440.1.cds2NO15G03440.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03440.1.cds3NO15G03440.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03440.1.cds4NO15G03440.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03440.1.cds5NO15G03440.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03440.1.cds6NO15G03440.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03440.1.cds7NO15G03440.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03440.1.cds8NO15G03440.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03440.1.cds9NO15G03440.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03440.1.cds10NO15G03440.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03440.1.cds11NO15G03440.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G03440.1 ID=NO15G03440.1|Name=NO15G03440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1592bp
ACTCACAGCGTGGAACAGCACCGACCGAAGCACACAAGGATAAGAACGCC
ATGCGCTGTCTTGTTCGTATCATCGTCCCGCTTGCAGCAGTGGGCCTGGC
TACGGCGCAGGTGCGCATCCCCTTGACACGCCGACCAGCCAACCAAGTCA
TTGACTCTATCCTCCAGCATCCGCAACAAGCCCTGCAGAGCACGGGTGAG
CCCGGGGAAGGTGACATCATCATCTCAGATGTCAGCAATGCACAGTACTT
CGGAGAGATCAATGTGGGCTCTCAGGGTCAAACATTCGAGGTCATCTTCG
ACACAGGTTCGTCCAACTTGTGGATTCCGTCCCTAGACTGCGCCACGTCC
TGCGCCGCCAAGAGCAAGTATGACCACGACGACTCCGACACCTACGTCGA
AAACGGTGCCGAGTTCAAGATTATGTATGGCAGCGGGCCGGTGCAGGGCT
ACTTCTCCGAGGATAACGTCGAGCTCGGGGGGCTCACCATTGAACAGCAA
GCATTCGCTGAAGTGACGGACGCCTCGGGTCTAGGCGCAGCTTTCATGGC
TGGATCGTTTGATGGTATTTTGGGGCTGGCCTTTGACTCCATCTCTGTGG
GCAAGGTCACGACGCCCTTCCACAACATGATCAAGCAGGGTCTCCTCGCC
GAGCCCGTTTTCAGCTTCTACCTCGGGGACAATGCCCCGGGCGAGCTGAC
GCTTGGAGGCATCGATCCCGCCCACTACCGGGGCAATATTCACCACGTCC
CGCTCAAGTCGGCCACGTACTGGGAGATCGAGCTGGACGACGTGCAGGTG
GAGGGCATGTCCCTTACCAGCACCCACTCGGCCATAGTTGACTCGGGCAC
TTCCCTCATCACGGGTCCAAAGAAAGAGATCTCCAAGCTGGCCAAGCAAG
TGGGGGCCACGCGCTTCCTCAAGGGCGAGTATTTGATTGATTGCGACGCC
CAAGGCCCGGACATTGACTTCGTCATCGACGGGCGCACCTACTCTCTGTC
GGCGGATGACTACAAGATCAGAAATGGCGGTCTGTGCCTCTTCGCTTTCA
TGGGCCTCGACATCCCCCGGCCCTCGGGGCCGCTTTGGATTTTAGGCGAC
TCGTTCATGCGTCGGTACTACACCACTTTCAACTACGAAAAGCAGACCGT
AGGCTTTGCTCAAGCTGCGTAACCATCAGGAGCAAACAGGCGGAAGGGTT
GGGCCTGAGGGAGGGCGGGCGTGAGGGAGGAGGCGGGAAGCTGATTGTGT
GAAGTGGCCTTTGTTAGGATGTTGAGAGAGAGAGAGGAAGAGGGGTGCTT
GGGCACGTACATAAAAATACATTATACAGAAAGAATGAGAAGAAAGAGGC
ACGCATCCAGTGGACAACACATCGAGGTGCGAAGAGGAGCGCGGTTGAGG
AGGTGTCAGAAGCGGTGAAGAAGAGACAGGTGTAAAAAACGATGACAAAC
AGAAAATGACGAGGAGAGACAAGCGGGACGCTGGGCCGGCTGTCAGGGTA
TGCAGACGAAGCAAATATCAAGAGATATGCCGCGACAATCGCTTTGGATA
GGACAGAACAATTACAAAGGACGAACAGACAGATGACTGCGT
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protein sequence of NO15G03440.1

>NO15G03440.1-protein ID=NO15G03440.1-protein|Name=NO15G03440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MRCLVRIIVPLAAVGLATAQVRIPLTRRPANQVIDSILQHPQQALQSTGE
PGEGDIIISDVSNAQYFGEINVGSQGQTFEVIFDTGSSNLWIPSLDCATS
CAAKSKYDHDDSDTYVENGAEFKIMYGSGPVQGYFSEDNVELGGLTIEQQ
AFAEVTDASGLGAAFMAGSFDGILGLAFDSISVGKVTTPFHNMIKQGLLA
EPVFSFYLGDNAPGELTLGGIDPAHYRGNIHHVPLKSATYWEIELDDVQV
EGMSLTSTHSAIVDSGTSLITGPKKEISKLAKQVGATRFLKGEYLIDCDA
QGPDIDFVIDGRTYSLSADDYKIRNGGLCLFAFMGLDIPRPSGPLWILGD
SFMRRYYTTFNYEKQTVGFAQAA*
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mRNA from alignment at chr15:991811..995390+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G03440.1 ID=NO15G03440.1|Name=NO15G03440.1|organism=Nannochloropsis oceanica|type=mRNA|length=3580bp|location=Sequence derived from alignment at chr15:991811..995390+ (Nannochloropsis oceanica)
ACTCACAGCGTGGAACAGCACCGACCGAAGCACACAAGGATAAGAACGCC
ATGCGCTGTCTTGTTCGTATCATCGTCCCGCTTGCAGCAGTGGGCCTGGC
TACGGCGCAGGTGCGCATCCCCTTGACACGCCGACCAGCCAACCAAGTCA
TTGACTCTATCCTCCAGCATCCGCAACAGTAAGGAAGCTCGGGGAGATTG
GAAATGGGATGTCTCTCTATGGCAAAATCGCATGCAGAGGAGGCTTCTGA
GCAGCCGTGCCTCGGCTTTTAACGTGGACATAGCGTGGGATCTAGAGTGG
AAGCGTTGCTGTTGGTGTTGCCTTTCTCGGTCGAGCTTGACCGACTCAAC
CCTTCACCCTTTTTCCCTGTCTCCTTCCTCCCTTTTTTAGAGCCCTGCAG
AGCACGGGTGAGCCCGGGGAAGGTGACATCATCATCTCAGATGTGAGTGT
AAGCAGAAGGGAGGACAGGACAGATAAAATACGGAGCTTTCAGATATAAT
CTGGAACGAATAGACTCAGGAATTCAACCTTTCCTTCATCTCTCCTCATC
CCCTTATCCGTCCACAATACGATTAGGTCAGCAATGCACAGTACTTCGGA
GAGATCAATGTGGGCTCTCAGGGTCAAACATTCGAGGTGAGGAAAAGAAA
ATGGGTTGGGCAGCGTTTCGGGGATGGAAGGCCAGTCAGGGGCGTTTCAT
CGTTCATTTGTTTCAACTCCGCGCGGCAAGAGAGGAACCCAAATATCGTT
AGGTCGAGACAATTGTCCTGGGTCCTTCTGCTGCGCTACCTCACTCACAC
TGTCCACCAGCCCTTCCTCACTCTTCCTTTCTCTCGCCCTCCGCGTTCCT
CTCAACCAGGTCATCTTCGACACAGGTTCGTCCAACTTGTGGATTCCGTC
CCTAGACTGCGCCACGTCCTGCGCCGCCAAGAGCAAGTATGACCACGACG
ACTCCGACACCTACGTCGAAAACGGTGCCGAGTTCAAGATTATGTATGGC
AGCGGGCCGGTGCAGGTGCGCGCTTTCCCCCTTTCCCTTCTCCCCTTATT
TTGTGCGCCGGTCTGTCTTCTTCCCCCGTCGTGCGTCCGTGCTGGGAATG
TGACGTCTCCCTGCCTCTTGGAGGAGTCTGCCTACTGCTTCTTCTATCCA
GAAAAGATGTCTCAGTAACACACGTCCTCCCTCCCTCCCTCCCTCCCCGT
TCCTAGGGCTACTTCTCCGAGGATAACGTCGAGCTCGGGGGGCTCACCAT
TGAACAGCAAGCATTCGCTGAAGTGACGGACGCCTCGGGTCTAGGCGCAG
CTTTCATGGCTGGATCGTTTGATGGTATTTTGGGGTAAGAAGGGAGCGAA
CGAGGGAGAGATGGGGGGAGGGAAGGAAGGACGTTCACAAGGAGGGGAAG
AGGGTGGGTCATGCTGAGGGAATAGACAGATCGATGCTCGATGCCCGATG
CTGCGTTTGTGACGGATGTATATGGGGCCTCTCGTGGCGTGGCCTTTGGG
GGTAGGGGAGAAGCGAGGGCGGGAGGGAGGCACAGAGGGAGTGAGAGAAG
GGGGAAAGTGAAGGACCGGTGTCCATCGAAAGCCCAAGTCCTCCTTTTCC
CATCCTCTCCATGTCTCACTTCCCACCCTCTCCCTGTCTCACTTCCCACC
CCTCTTCCTGTCTCTCCCTTATCAGGCTGGCCTTTGACTCCATCTCTGTG
GGCAAGGTCACGACGCCCTTCCACAACATGATCAAGCAGGGTCTCCTCGC
CGAGCCCGTTTTCAGCTTCTACCTCGGGGTAAGCGCCGCGGTCGCTTCTT
CATCCCCTGCTTCACTCTCCCCTCCTCTCTTTCTGGTTTCCTCTTGTGTT
CTTGGAGCTACTCTTCGGTCCCTCTTTGGGCCAGACAAGCTCGGAGCCAG
CCCTGCCGCCCTTGTACATTCCTTTGTCGTCACCTTCTCGTGCGTGGAGC
TTTTCCGGAAAGAAGGACGAACAACACCACGTAGGCTGTGGCTCAAATCC
CCCACCTATGAGATCCCTTAATCCCTAAATCCCTCCCTCTTTCCCCCAGG
ACAATGCCCCGGGCGAGCTGACGCTTGGAGGCATCGATCCCGCCCACTAC
CGGGGCAATATTCACCACGTCCCGCTCAAGGTAGGGAGGGGGCAAAGGGT
GCGGAGCAGCGGGCGGGCGGGCATACGCAGACAAATGAAACAATCTTCAA
ATTATCCAGCTCGCCCTTCCTCCCCCTCCCCTCTCTCCCTTTCTCACTTC
TTAGTCGGCCACGTACTGGGAGATCGAGCTGGACGACGTGCAGGTGGAGG
GCATGTCCCTTACCAGCACCCACTCGGCCATAGTTGACTCGGGTAAGTGG
GGAGGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGAAGGGTAACAGTAATA
GTGGTTGTCACTGTCATTTTGGGCTTGGGTAGGGGTAGTGAAGGGGATTT
GTATAGAAGGGTGTAGTTTCTGTCACTCGTGTGGTCTTGTTACCGACCCA
CTCCCTCTCCCCCTCCCTTCCTCCCTTCCCCCCTCTCTCCCTTCCCTCCC
CAGGCACTTCCCTCATCACGGGTCCAAAGAAAGAGATCTCCAAGCTGGCC
AAGCAAGTGGGGGCCACGCGCTTCCTCAAGGGCGAGTATTTGATTGATTG
CGACGCCCAAGGCCCGGACATTGACTTCGTCATCGACGGGTGAGCCAGGG
AGGGACAGAGGGGGAAGGGTGTAGGGAGGAGACACAGGACGCCCGAATCT
TTCCCGAAACGTAAACCTGACCCTAACTTCACTCTTTTCCCTTTTCCTAC
CTTTCCCATTCAGGCGCACCTACTCTCTGTCGGCGGATGACTACAAGATC
AGAAATGGCGGTCTGTGCCTCTTCGCTTTCATGGGCCTCGACATCCCCCG
GCCCTCGGGGCCGCTTTGGATTTTAGGTAGGGGACGAGAGAGGAGGGGAG
AAAGGGTGATATAAGTGTTGAAAGTTGCACTGATTAAAAGCGAATGAAAG
GTCTGCTGAATCAATGGATTTCGGTAGAGCCAATCTGACTCATCACTGCA
ACCCTTCTCCGTCCCTCCCTCCCCCCCTCGCAGGCGACTCGTTCATGCGT
CGGTACTACACCACTTTCAACTACGAAAAGCAGACCGTAGGCTTTGCTCA
AGCTGCGTAACCATCAGGAGCAAACAGGCGGAAGGGTTGGGCCTGAGGGA
GGGCGGGCGTGAGGGAGGAGGCGGGAAGCTGATTGTGTGAAGTGGCCTTT
GTTAGGATGTTGAGAGAGAGAGAGGAAGAGGGGTGCTTGGGCACGTACAT
AAAAATACATTATACAGAAAGAATGAGAAGAAAGAGGCACGCATCCAGTG
GACAACACATCGAGGTGCGAAGAGGAGCGCGGTTGAGGAGGTGTCAGAAG
CGGTGAAGAAGAGACAGGTGTAAAAAACGATGACAAACAGAAAATGACGA
GGAGAGACAAGCGGGACGCTGGGCCGGCTGTCAGGGTATGCAGACGAAGC
AAATATCAAGAGATATGCCGCGACAATCGCTTTGGATAGGACAGAACAAT
TACAAAGGACGAACAGACAGATGACTGCGT
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Coding sequence (CDS) from alignment at chr15:991811..995390+

>NO15G03440.1 ID=NO15G03440.1|Name=NO15G03440.1|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at chr15:991811..995390+ (Nannochloropsis oceanica)
ATGCGCTGTCTTGTTCGTATCATCGTCCCGCTTGCAGCAGTGGGCCTGGC
TACGGCGCAGGTGCGCATCCCCTTGACACGCCGACCAGCCAACCAAGTCA
TTGACTCTATCCTCCAGCATCCGCAACAAGCCCTGCAGAGCACGGGTGAG
CCCGGGGAAGGTGACATCATCATCTCAGATGTCAGCAATGCACAGTACTT
CGGAGAGATCAATGTGGGCTCTCAGGGTCAAACATTCGAGGTCATCTTCG
ACACAGGTTCGTCCAACTTGTGGATTCCGTCCCTAGACTGCGCCACGTCC
TGCGCCGCCAAGAGCAAGTATGACCACGACGACTCCGACACCTACGTCGA
AAACGGTGCCGAGTTCAAGATTATGTATGGCAGCGGGCCGGTGCAGGGCT
ACTTCTCCGAGGATAACGTCGAGCTCGGGGGGCTCACCATTGAACAGCAA
GCATTCGCTGAAGTGACGGACGCCTCGGGTCTAGGCGCAGCTTTCATGGC
TGGATCGTTTGATGGTATTTTGGGGCTGGCCTTTGACTCCATCTCTGTGG
GCAAGGTCACGACGCCCTTCCACAACATGATCAAGCAGGGTCTCCTCGCC
GAGCCCGTTTTCAGCTTCTACCTCGGGGACAATGCCCCGGGCGAGCTGAC
GCTTGGAGGCATCGATCCCGCCCACTACCGGGGCAATATTCACCACGTCC
CGCTCAAGTCGGCCACGTACTGGGAGATCGAGCTGGACGACGTGCAGGTG
GAGGGCATGTCCCTTACCAGCACCCACTCGGCCATAGTTGACTCGGGCAC
TTCCCTCATCACGGGTCCAAAGAAAGAGATCTCCAAGCTGGCCAAGCAAG
TGGGGGCCACGCGCTTCCTCAAGGGCGAGTATTTGATTGATTGCGACGCC
CAAGGCCCGGACATTGACTTCGTCATCGACGGGCGCACCTACTCTCTGTC
GGCGGATGACTACAAGATCAGAAATGGCGGTCTGTGCCTCTTCGCTTTCA
TGGGCCTCGACATCCCCCGGCCCTCGGGGCCGCTTTGGATTTTAGGCGAC
TCGTTCATGCGTCGGTACTACACCACTTTCAACTACGAAAAGCAGACCGT
AGGCTTTGCTCAAGCTGCGTAA
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Synonyms
Publications