NO15G03330.1, NO15G03330.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO15G03330.1
Unique Name	NO15G03330.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2007
Alignment location	chr15:970303..972365 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr15	genome	chr15:970303..972365 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO15G03330.1 vs.
Match: EWM22263.1 (myc-induced nuclear antigen [Nannochloropsis gaditana])

HSP 1 Score: 449.1 bits (1154), Expect = 2.300e-122
Identity = 260/439 (59.23%), Postives = 298/439 (67.88%), Query Frame = 0

Query:    1 MGKKRKSMPVTFGAPVSQK--LKTS---STALPATTTKASP------TTSTASNLERAFAQLTTDPLGLLVGGENTASFLENQWEQAPCVFRASPERLAYFHHLLSLSSYLQAAKKRDEPRRVKSADKMPASRSFRLGVDVNAARYVRGHRETLNEINAEQAKRTDLTAVHHRQATAATLSLLHDTKGCTLQVLQPQRWDDRCWRLAAALEAQFGCLVGVNAYLTPGGTQGLAPHCDPVEIFVIQTENKKSWRLYEPLEGFALPNQASGDLRQDQIGKPCMEVVLSPGDVLYMPRGTIHQAVAGEGGKEGRTAVASSHLTISTYQQWSYGDLATQMMEVVGHNVTYKTSPATFPLPMRRSPLPGFIFEHSLARPPSPPASVTALAAGLRALAAHIEKNPKLVSLG-----TWSL--CMDFLGAR--LPPHPATLLPPGP 420
            MGKKRKSMPVTF AP  QK  LKTS    T+    T  A+P      ++ + S LERAF QL  DPL  LVG    ASFLE  WE AP VF ++PERLA+FHHLLSL  YL+ A++RDE    K         SFRLGVDVNAARYV G RET N             A +  Q TA+TLS LH+ KGCTLQVLQPQRWDD+CWRLAAALEAQFGCLVGVNAYLTPGGTQGLAPH DPVEIFVIQTE KK+WRLY P+  FALPNQASGDL+Q++IG P +EVVLSPGDVLYMPRGT+HQAVA EGG+EG  A AS+HLT+STYQQWSY D AT + +VVGHNVT++T+P+TFPL +RRSP PG     +   PP  P      AA  RA A       +++S G     TW+   C    G R  LP  P +L P  P
Sbjct:   65 MGKKRKSMPVTFTAPSLQKTKLKTSPGEGTSTSTMTINAAPLAGLSHSSPSFSILERAFEQLACDPLDFLVGEGKRASFLEKHWESAPSVFPSTPERLAFFHHLLSLEDYLKTARERDEKGEEKGR------HSFRLGVDVNAARYVHGQRETHN-------------ATNRGQGTASTLSRLHEQKGCTLQVLQPQRWDDKCWRLAAALEAQFGCLVGVNAYLTPGGTQGLAPHSDPVEIFVIQTEGKKAWRLYAPMGNFALPNQASGDLKQEEIGTPSLEVVLSPGDVLYMPRGTVHQAVA-EGGREGGRA-ASAHLTLSTYQQWSYADWATHIFQVVGHNVTFRTAPSTFPLALRRSPPPGPASSTAFFIPPPLPQLFPPCAAWPRACARW-----RIISSGTRKSPTWASGPCAWTSGGRGSLPTQPPSLPPALP 477

The following BLAST results are available for this feature:

BLAST of NO15G03330.1 vs.

BLAST of NO15G03330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22263.1	2.300e-122	59.23	myc-induced nuclear antigen [Nannochloropsis gadit...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO15G03330	NO15G03330	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO15G03330.1	NO15G03330.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO15G03330.1.cds1	NO15G03330.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO15G03330.1.cds2	NO15G03330.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr15:970303..972365-
coding sequence from alignment at chr15:970303..972365-

mRNA sequence

>NO15G03330.1 ID=NO15G03330.1|Name=NO15G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2007bp
ACAGCTACATCTTCGTTTGAAGCCATGGGCAAGAAACGCAAGTCCATGCC
CGTGACCTTTGGAGCGCCGGTCTCCCAAAAACTCAAAACCTCCTCTACTG
CTCTCCCCGCCACTACCACCAAGGCCTCCCCCACCACATCTACCGCCTCC
AACCTCGAGCGTGCCTTTGCACAGCTCACTACAGACCCCCTTGGCCTCCT
GGTGGGAGGAGAAAACACTGCCTCGTTCCTGGAAAATCAGTGGGAGCAAG
CCCCGTGCGTCTTCCGAGCCAGCCCGGAACGCCTTGCCTACTTCCACCAT
CTCCTTTCCCTTTCGTCCTACCTGCAAGCCGCCAAAAAACGCGATGAGCC
GAGGAGAGTAAAATCAGCCGATAAAATGCCTGCTTCTCGCTCCTTTCGCC
TGGGCGTGGATGTGAACGCTGCGCGCTACGTACGTGGCCACCGAGAAACC
CTCAACGAGATCAACGCCGAGCAAGCAAAGCGAACCGATCTCACGGCGGT
GCATCACAGACAAGCCACGGCGGCCACGCTCTCCCTCCTCCACGACACCA
AAGGCTGTACGCTCCAAGTACTCCAACCCCAGCGCTGGGACGACAGATGC
TGGCGGCTCGCTGCGGCGCTTGAGGCCCAATTCGGGTGTTTGGTCGGGGT
GAACGCCTACTTAACTCCGGGGGGGACACAAGGGCTGGCACCCCATTGTG
ATCCTGTGGAGATATTCGTCATTCAGACAGAAAATAAGAAGTCCTGGCGC
TTGTACGAACCTCTAGAGGGCTTTGCTCTGCCCAACCAGGCGAGCGGGGA
TTTGCGGCAGGACCAGATTGGGAAGCCGTGCATGGAGGTGGTGTTGTCAC
CCGGAGATGTCCTCTACATGCCGCGAGGCACGATCCACCAGGCTGTGGCA
GGGGAGGGAGGGAAGGAGGGAAGAACTGCCGTCGCTTCCTCTCACTTGAC
GATTTCGACGTACCAGCAGTGGAGCTATGGCGATTTGGCCACTCAAATGA
TGGAGGTGGTGGGTCACAACGTCACCTACAAAACCAGCCCAGCCACTTTT
CCCCTTCCCATGCGTCGCTCTCCTCTCCCCGGCTTCATATTTGAACACAG
CCTTGCTCGCCCTCCCTCCCCACCTGCCTCCGTCACGGCCCTTGCAGCGG
GTTTACGCGCTCTGGCCGCGCACATTGAGAAAAACCCGAAGCTTGTCTCT
CTAGGCACGTGGTCCTTGTGCATGGACTTCTTGGGAGCTCGCCTTCCTCC
TCACCCTGCCACCCTTCTTCCCCCTGGCCCGATGCCTGAACGGTTGATGG
ACGGGATTAAACTGAGGGTGGGGAAAGGGTGCGCGTATCTATTACCCTAC
ACGGTGAGAGAGGTGAAGCTAGGCATGGAGGGAGAGGAAGGGGAAGAAGG
AGAGGGAGGTGGGATGATGAAGCTTGTGCATTGTTTGGATAACAGTAGGT
GGCTGCATATGATGGGGGCGGAGGAGGAGGAGGAAGACGGAGAAGCGGAG
GAGGAGGAAGAAGAGGAGGAGGAGGACGACGACGAGAGCGAGGATGATGA
GGATGAGACCGGGGAAGAGGAGGAGGAGGAAGCGGTAATGAAGTGGAAAG
GAAACGAAGAGGAAGGAAAGGAGCATATGCGAAGCGAGGAGGGGCAAGAG
GAGGAGGAGGATGAGGGGGAGAAGCAAGAGGAGGAGGAGGGGGGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGCCTCTCCCGCTGCTGGCCGTCTCTGCTT
TGCTTGGTCATGGAGGAGGGGGGGAAGGGGGGGAAGAGAGCAGGACGATA
AAGATCAAAGATCTGCCGGGCTTGAGCAATGACGCTGACAAAATGGAGCT
GGCCGTGGCTCTGTGGCAGGAGGGGTTGGTGGCCACGGTGCGGAAGAAGA
AGAAAGGGGTGGAGCGACGCATGAAGGGCGCCTTAGGGGACGTGTTGGTG
GCGAGGCACGGAGAGGGAGGACAGCTTCCGAGTGTGGCGAAGAAGGTGAG
GTATTAA

protein sequence of NO15G03330.1

>NO15G03330.1-protein ID=NO15G03330.1-protein|Name=NO15G03330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=661bp
MGKKRKSMPVTFGAPVSQKLKTSSTALPATTTKASPTTSTASNLERAFAQ
LTTDPLGLLVGGENTASFLENQWEQAPCVFRASPERLAYFHHLLSLSSYL
QAAKKRDEPRRVKSADKMPASRSFRLGVDVNAARYVRGHRETLNEINAEQ
AKRTDLTAVHHRQATAATLSLLHDTKGCTLQVLQPQRWDDRCWRLAAALE
AQFGCLVGVNAYLTPGGTQGLAPHCDPVEIFVIQTENKKSWRLYEPLEGF
ALPNQASGDLRQDQIGKPCMEVVLSPGDVLYMPRGTIHQAVAGEGGKEGR
TAVASSHLTISTYQQWSYGDLATQMMEVVGHNVTYKTSPATFPLPMRRSP
LPGFIFEHSLARPPSPPASVTALAAGLRALAAHIEKNPKLVSLGTWSLCM
DFLGARLPPHPATLLPPGPMPERLMDGIKLRVGKGCAYLLPYTVREVKLG
MEGEEGEEGEGGGMMKLVHCLDNSRWLHMMGAEEEEEDGEAEEEEEEEEE
DDDESEDDEDETGEEEEEEAVMKWKGNEEEGKEHMRSEEGQEEEEDEGEK
QEEEEGGRRRRRRRRRPLPLLAVSALLGHGGGGEGGEESRTIKIKDLPGL
SNDADKMELAVALWQEGLVATVRKKKKGVERRMKGALGDVLVARHGEGGQ
LPSVAKKVRY*

mRNA from alignment at chr15:970303..972365-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO15G03330.1 ID=NO15G03330.1|Name=NO15G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2063bp|location=Sequence derived from alignment at chr15:970303..972365- (Nannochloropsis oceanica)
ACAGCTACATCTTCGTTTGAAGCCATGGGCAAGAAACGCAAGTCCATGCC
CGTGACCTTTGGAGCGCCGGTCTCCCAAAAACTCAAAACCTCCTCTACTG
CTCTCCCCGCCACTACCACCAAGGCCTCCCCCACCACATCTACCGCCTCC
AACCTCGAGCGTGCCTTTGCACAGCTCACTACAGACCCCCTTGGCCTCCT
GGTGGGAGGAGAAAACACTGCCTCGTTCCTGGAAAATCAGTGGGAGCAAG
CCCCGTGCGTCTTCCGAGCCAGCCCGGAACGCCTTGCCTACTTCCACCAT
CTCCTTTCCCTTTCGTCCTACCTGCAAGCCGCCAAAAAACGCGATGAGCC
GAGGAGAGTAAAATCAGCCGATAAAATGCCTGCTTCTCGCTCCTTTCGCC
TGGGCGTGGATGTGAACGCTGCGCGCTACGTACGTGGCCACCGAGAAACC
CTCAACGAGATCAACGCCGAGCAAGCAAAGCGAACCGATCTCACGGCGGT
GCATCACAGACAAGCCACGGCGGCCACGCTCTCCCTCCTCCACGACACCA
AAGGCTGTACGCTCCAAGTACTCCAACCCCAGCGCTGGGACGACAGATGC
TGGCGGCTCGCTGCGGCGCTTGAGGCCCAATTCGGGTGTTTGGTCGGGGT
GAACGCCTACTTAACTCCGGGGGGGACACAAGGGCTGGCACCCCATTGTG
ATCCTGTGGAGATATTCGTCATTCAGACAGAAAATAAGAAGTCCTGGCGC
TTGTACGAACCTCTAGAGGGCTTTGCTCTGCCCAACCAGGCGAGCGGGGA
TTTGCGGCAGGACCAGATTGGGAAGCCGTGCATGGAGGTGGTGTTGTCAC
CCGGAGATGTCCTCTACATGCCGCGAGGCACGATCCACCAGGCTGTGGCA
GGGGAGGGAGGGAAGGAGGGAAGAACTGCCGTCGCTTCCTCTCACTTGAC
GATTTCGACGTACCAGCAGTGGAGCTATGGCGATTTGGCCACTCAAATGA
TGGAGGTGGTGGGTCACAACGTCACCTACAAAACCAGCCCAGCCACTTTT
CCCCTTCCCATGCGTCGCTCTCCTCTCCCCGGCTTCATATTTGAACACAG
CCTTGCTCGCCCTCCCTCCCCACCTGCCTCCGTCACGGCCCTTGCAGCGG
GTTTACGCGCTCTGGCCGCGCACATTGAGAAAAACCCGAAGCTTGTCTCT
CTAGGCACGTGGTCCTTGTGCATGGACTTCTTGGGAGCTCGCCTTCCTCC
TCACCCTGCCACCCTTCTTCCCCCTGGCCCGATGCCTGAACGGTTGATGG
ACGGGATTAAACTGAGGGTGGGGAAAGGGTGCGCGTATCTATTACCCTAC
ACGGTGAGAGAGGTGAAGCTAGGCATGGAGGGAGAGGAAGGGGAAGAAGG
AGAGGGAGGTGGGATGATGAAGCTTGTGCATTGTTTGGATAACAGTAGGT
GGCTGCATATGATGGGGGCGGAGGAGGAGGAGGAAGACGGAGAAGCGGAG
GAGGAGGAAGAAGAGGAGGAGGAGGACGACGACGAGAGCGAGGATGATGA
GGATGAGACCGGGGAAGAGGAGGAGGAGGAAGCGGTAATGAAGTGGAAAG
GAAACGAAGAGGAAGGAAAGGAGCATATGCGAAGCGAGGAGGGGCAAGAG
GAGGAGGAGGATGAGGGGGAGAAGCAAGAGGAGGAGGAGGGGGGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGCCTCTCCCGCTGTAGGGATGTCGCCGCT
CGATGCCATTCCTGGGATTATCTTCCCAGCAAAATTTAGGCTGGCCGTCT
CTGCTTTGCTTGGTCATGGAGGAGGGGGGGAAGGGGGGGAAGAGAGCAGG
ACGATAAAGATCAAAGATCTGCCGGGCTTGAGCAATGACGCTGACAAAAT
GGAGCTGGCCGTGGCTCTGTGGCAGGAGGGGTTGGTGGCCACGGTGCGGA
AGAAGAAGAAAGGGGTGGAGCGACGCATGAAGGGCGCCTTAGGGGACGTG
TTGGTGGCGAGGCACGGAGAGGGAGGACAGCTTCCGAGTGTGGCGAAGAA
GGTGAGGTATTAA

Coding sequence (CDS) from alignment at chr15:970303..972365-

>NO15G03330.1 ID=NO15G03330.1|Name=NO15G03330.1|organism=Nannochloropsis oceanica|type=CDS|length=1983bp|location=Sequence derived from alignment at chr15:970303..972365- (Nannochloropsis oceanica)
ATGGGCAAGAAACGCAAGTCCATGCCCGTGACCTTTGGAGCGCCGGTCTC
CCAAAAACTCAAAACCTCCTCTACTGCTCTCCCCGCCACTACCACCAAGG
CCTCCCCCACCACATCTACCGCCTCCAACCTCGAGCGTGCCTTTGCACAG
CTCACTACAGACCCCCTTGGCCTCCTGGTGGGAGGAGAAAACACTGCCTC
GTTCCTGGAAAATCAGTGGGAGCAAGCCCCGTGCGTCTTCCGAGCCAGCC
CGGAACGCCTTGCCTACTTCCACCATCTCCTTTCCCTTTCGTCCTACCTG
CAAGCCGCCAAAAAACGCGATGAGCCGAGGAGAGTAAAATCAGCCGATAA
AATGCCTGCTTCTCGCTCCTTTCGCCTGGGCGTGGATGTGAACGCTGCGC
GCTACGTACGTGGCCACCGAGAAACCCTCAACGAGATCAACGCCGAGCAA
GCAAAGCGAACCGATCTCACGGCGGTGCATCACAGACAAGCCACGGCGGC
CACGCTCTCCCTCCTCCACGACACCAAAGGCTGTACGCTCCAAGTACTCC
AACCCCAGCGCTGGGACGACAGATGCTGGCGGCTCGCTGCGGCGCTTGAG
GCCCAATTCGGGTGTTTGGTCGGGGTGAACGCCTACTTAACTCCGGGGGG
GACACAAGGGCTGGCACCCCATTGTGATCCTGTGGAGATATTCGTCATTC
AGACAGAAAATAAGAAGTCCTGGCGCTTGTACGAACCTCTAGAGGGCTTT
GCTCTGCCCAACCAGGCGAGCGGGGATTTGCGGCAGGACCAGATTGGGAA
GCCGTGCATGGAGGTGGTGTTGTCACCCGGAGATGTCCTCTACATGCCGC
GAGGCACGATCCACCAGGCTGTGGCAGGGGAGGGAGGGAAGGAGGGAAGA
ACTGCCGTCGCTTCCTCTCACTTGACGATTTCGACGTACCAGCAGTGGAG
CTATGGCGATTTGGCCACTCAAATGATGGAGGTGGTGGGTCACAACGTCA
CCTACAAAACCAGCCCAGCCACTTTTCCCCTTCCCATGCGTCGCTCTCCT
CTCCCCGGCTTCATATTTGAACACAGCCTTGCTCGCCCTCCCTCCCCACC
TGCCTCCGTCACGGCCCTTGCAGCGGGTTTACGCGCTCTGGCCGCGCACA
TTGAGAAAAACCCGAAGCTTGTCTCTCTAGGCACGTGGTCCTTGTGCATG
GACTTCTTGGGAGCTCGCCTTCCTCCTCACCCTGCCACCCTTCTTCCCCC
TGGCCCGATGCCTGAACGGTTGATGGACGGGATTAAACTGAGGGTGGGGA
AAGGGTGCGCGTATCTATTACCCTACACGGTGAGAGAGGTGAAGCTAGGC
ATGGAGGGAGAGGAAGGGGAAGAAGGAGAGGGAGGTGGGATGATGAAGCT
TGTGCATTGTTTGGATAACAGTAGGTGGCTGCATATGATGGGGGCGGAGG
AGGAGGAGGAAGACGGAGAAGCGGAGGAGGAGGAAGAAGAGGAGGAGGAG
GACGACGACGAGAGCGAGGATGATGAGGATGAGACCGGGGAAGAGGAGGA
GGAGGAAGCGGTAATGAAGTGGAAAGGAAACGAAGAGGAAGGAAAGGAGC
ATATGCGAAGCGAGGAGGGGCAAGAGGAGGAGGAGGATGAGGGGGAGAAG
CAAGAGGAGGAGGAGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCC
TCTCCCGCTGCTGGCCGTCTCTGCTTTGCTTGGTCATGGAGGAGGGGGGG
AAGGGGGGGAAGAGAGCAGGACGATAAAGATCAAAGATCTGCCGGGCTTG
AGCAATGACGCTGACAAAATGGAGCTGGCCGTGGCTCTGTGGCAGGAGGG
GTTGGTGGCCACGGTGCGGAAGAAGAAGAAAGGGGTGGAGCGACGCATGA
AGGGCGCCTTAGGGGACGTGTTGGTGGCGAGGCACGGAGAGGGAGGACAG
CTTCCGAGTGTGGCGAAGAAGGTGAGGTATTAA

Synonyms

Publications