NO15G03320.1, NO15G03320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G03320.1
Unique NameNO15G03320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2236
Alignment locationchr15:967471..969898 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:967471..969898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G03320.1 vs.
Match: EWM22259.1 (Beta-lactamase/transpeptidase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 569.7 bits (1467), Expect = 9.900e-159
Identity = 310/530 (58.49%), Postives = 381/530 (71.89%), Query Frame = 0 
Query:   28 RSSTAPSSTSRPA-ASSSSPPSSSSTSSKRRKNNYTISAPTITSTNTIATLFLYLLLALLPSLAPALHFGDVRYFSHDATKTLHHNLSTLLEKGDINGAYIMGSKDGEIVLQESVGYKHQGPHPLFRLFSMTKPVTAVLALQLVEEGKMGLDDEIAEYLPELAHLRVYDGLSVLMEEG-----MTGLASLLGRNSSSSNSSSSSNSSSNKPQHH--HHRQNFLSHPATKNATIRELLTHTAGFAYGDNISHPIDQAYDEAMLVDFYDHSELDFLQELASIPLLSEPGTEFHYSLGFDVLGVLVSRVGGKPLDVLMKERVFEPLGMKETGFSIPMNKMWRMARMKIQGDLGTGFVGDLAGLRAMEEPSFKSGGGGLISTAQDYLKLAHMLLNGGRNASGMQVLGEESVRAMTTNQLLPAQLPYHMTSFPDYEGSGFGYGVMVIGEEEVSLSSPQGEVSWAGMASNSWWISPSHGTALVAMTQHLPYSSAMEEVVKPFFYAPFLGAETEMRKKWEGEKEGGRNKKGLRGNGQ 550
            RS   PS +   + A SSS P+SS    +RR         T+  +   + +FL L+ +   S A  LH  +  YFSH+ TKTLH NLS+L++ G  +GAY++GSK GE+VL++ VGY HQG HP FRLFSMTKP+TAVL LQL EEG++ LDDEIA YLPELAHL VYDG++ L  +      +  + +   R+S+  +S+ ++  ++ K        RQ FLSHPAT+NATIRELLTHTAGFAYGDN+ HP+D AYDEA+L DFY H+E+DFL+ LA IPLL+EPGTEFHYSLGFDVLGVL+ RVG KPLDVLMKE+VFEPLGM ETGF IPM K+WR+A MK+  D+  G    L  L A E+P FKSGGGGLISTAQDYLK A+MLL  G++  G QVLGE+SV AMT+NQLLP QLPYHM  FPD+EGSGFGYGVMV+G+ EVS SSP GEVSWAG+ASNSWWISP   TALVAMTQ +P+   +E++VKPFFY PFL    +       EKE G   + LRG+ +
Sbjct:   11 RSPCIPSRSGAVSPACSSSQPTSSKPVCRRRHQALRYRPVTVFGSEFTSLIFLSLVFSFT-SFASGLHVSNSTYFSHEDTKTLHQNLSSLVDAGRFDGAYVVGSKSGEVVLKDVVGYHHQGSHPFFRLFSMTKPITAVLTLQLAEEGELSLDDEIAMYLPELAHLTVYDGVTDLFGQAGPWGSLQNVTTPTDRSSAQKDSAEANFRATRKAYSELLARRQGFLSHPATRNATIRELLTHTAGFAYGDNLGHPVDDAYDEALLTDFYGHTEIDFLRTLADIPLLTEPGTEFHYSLGFDVLGVLLGRVGKKPLDVLMKEKVFEPLGMHETGFFIPMKKLWRLAPMKVAEDM-EGLGAKLTELSATEDPPFKSGGGGLISTAQDYLKFANMLLRKGKSKEGRQVLGEKSVEAMTSNQLLPHQLPYHMAGFPDFEGSGFGYGVMVVGDGEVSPSSPLGEVSWAGLASNSWWISPQQDTALVAMTQVIPFDRTLEDLVKPFFYKPFLHEGNQK------EKEKGGGSRSLRGSAE 532
The following BLAST results are available for this feature:
BLAST of NO15G03320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22259.19.900e-15958.49Beta-lactamase/transpeptidase-like protein [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G03320NO15G03320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G03320.1NO15G03320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G03320.1.cds1NO15G03320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03320.1.cds2NO15G03320.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G03320.1 ID=NO15G03320.1|Name=NO15G03320.1|organism=Nannochloropsis oceanica|type=mRNA|length=2236bp
AAAGAAGATGGGTTCTAGTCTAAAGGAGCAAGAGCAGACTGCCACCAAAG
TCTTTGCGTTGGGATTCTGGTCTTCTTTCCTTGCTCCTCGTTCGTCCACG
GCGCCATCATCCACCTCCCGCCCTGCTGCCTCCTCGTCTTCACCGCCCTC
ATCCTCATCGACATCATCCAAGCGTCGCAAGAATAACTACACCATTTCCG
CCCCCACCATCACTAGCACCAATACCATAGCCACCCTCTTCCTCTACCTC
CTCCTCGCCCTCCTCCCCTCCCTCGCTCCTGCCCTCCACTTCGGGGACGT
CCGTTACTTTTCGCATGACGCCACCAAGACCTTGCATCACAATTTATCCA
CGCTTCTTGAAAAGGGAGATATTAATGGTGCGTACATCATGGGTAGCAAA
GACGGGGAGATCGTCTTACAAGAATCGGTCGGGTATAAACATCAGGGCCC
TCACCCGTTGTTCCGCCTCTTTTCTATGACCAAGCCCGTGACGGCTGTTC
TGGCCTTGCAGCTAGTGGAAGAGGGAAAGATGGGATTAGATGACGAAATT
GCCGAGTATTTACCAGAGCTTGCTCACTTGAGAGTGTACGATGGTCTGTC
GGTATTGATGGAGGAGGGCATGACTGGGCTGGCATCGTTGCTTGGTAGAA
ACAGCAGCAGCAGCAACAGCAGCAGCAGCAGTAATAGCAGTAGCAATAAA
CCCCAGCACCACCATCATCGACAGAACTTCCTGTCTCACCCCGCCACCAA
AAACGCGACCATTCGGGAGCTCCTCACGCACACCGCGGGGTTTGCCTACG
GCGATAACATCAGCCACCCGATCGACCAAGCCTACGACGAGGCCATGCTC
GTGGATTTCTACGATCACAGTGAATTAGATTTCTTGCAGGAGTTGGCCAG
CATTCCCTTGCTATCCGAGCCAGGAACGGAGTTTCATTATTCGCTTGGCT
TTGATGTGCTAGGGGTGCTGGTGAGCAGGGTGGGAGGGAAGCCTTTGGAT
GTGTTGATGAAGGAGAGGGTTTTCGAGCCGTTAGGGATGAAGGAGACAGG
ATTCAGCATTCCCATGAACAAGATGTGGAGGATGGCGCGCATGAAAATAC
AAGGGGACCTTGGGACGGGCTTTGTGGGAGACTTGGCGGGACTAAGGGCA
ATGGAGGAGCCGTCATTCAAGAGTGGAGGAGGTGGTTTGATAAGCACAGC
GCAGGATTATCTGAAACTAGCGCACATGCTGCTGAATGGAGGAAGGAACG
CGAGTGGGATGCAGGTATTGGGGGAGGAGAGTGTGCGGGCTATGACGACC
AACCAGCTGTTGCCGGCACAGTTGCCGTATCACATGACGAGCTTTCCTGA
TTATGAGGGCAGTGGGTTCGGATATGGGGTGATGGTGATAGGCGAGGAGG
AGGTGAGCTTGTCGAGCCCGCAGGGAGAGGTGAGCTGGGCGGGGATGGCG
AGTAATAGTTGGTGGATCTCGCCGAGCCACGGTACGGCCTTGGTGGCGAT
GACGCAGCATTTGCCGTACAGTAGCGCGATGGAGGAGGTTGTAAAGCCCT
TCTTTTATGCGCCTTTCCTGGGGGCGGAGACGGAGATGAGGAAAAAGTGG
GAGGGGGAGAAGGAGGGAGGAAGGAATAAGAAGGGCCTGCGAGGAAATGG
TCAAGAGAAGTCGTAGTGTTTGAGGGAGAAAAAGGGATGAGAGGGTGGAT
GGTGAGGGCCAGTGTCTGCATCTGTTGTTTAAAAACAAATTGACAGAGAA
TAATCAAAACACCTCATCGGTCTGAAAGGAGTGTATCGTGACTAGGACTA
GATAAGGGAGGACAGGAAAGGAGAGGAAATGAAATCTCAAAAGAGGAGAA
ACAGCGAAAAGTGTCAGATGTCTGCGATGATGCGGGGAATGGTATTAATT
TTTTGCAGCAGATTTCCAATAAGCTTGCAAAACAAGAAGGGGGAAAAGAG
AAAGAATAAGAGTGAGTGGATGGCATGATGTAATGTAACTTCCTCCTTCT
CCCGAATTGGATAAAGAGAAATTATATGTACATGGCTGCTGGGCTGGGAG
TCAGACGAAGCGAACATGTTTGGATATAAATACGCGGTGTTATGTGCTTG
AGAAGGCAAGGATGCCAAGAAGTACACGTTTGAGATTTGAAAGGAGAAAT
TGTGATATAATTTGGAGCAAGAGGAAGAAGAAAAGGTGTTCGCTGGCAAA
ATAGATGGAAAGCGTTGCCTCCTGCGCCATTTTCAT
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protein sequence of NO15G03320.1

>NO15G03320.1-protein ID=NO15G03320.1-protein|Name=NO15G03320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=553bp
MGSSLKEQEQTATKVFALGFWSSFLAPRSSTAPSSTSRPAASSSSPPSSS
STSSKRRKNNYTISAPTITSTNTIATLFLYLLLALLPSLAPALHFGDVRY
FSHDATKTLHHNLSTLLEKGDINGAYIMGSKDGEIVLQESVGYKHQGPHP
LFRLFSMTKPVTAVLALQLVEEGKMGLDDEIAEYLPELAHLRVYDGLSVL
MEEGMTGLASLLGRNSSSSNSSSSSNSSSNKPQHHHHRQNFLSHPATKNA
TIRELLTHTAGFAYGDNISHPIDQAYDEAMLVDFYDHSELDFLQELASIP
LLSEPGTEFHYSLGFDVLGVLVSRVGGKPLDVLMKERVFEPLGMKETGFS
IPMNKMWRMARMKIQGDLGTGFVGDLAGLRAMEEPSFKSGGGGLISTAQD
YLKLAHMLLNGGRNASGMQVLGEESVRAMTTNQLLPAQLPYHMTSFPDYE
GSGFGYGVMVIGEEEVSLSSPQGEVSWAGMASNSWWISPSHGTALVAMTQ
HLPYSSAMEEVVKPFFYAPFLGAETEMRKKWEGEKEGGRNKKGLRGNGQE
KS*
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mRNA from alignment at chr15:967471..969898+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G03320.1 ID=NO15G03320.1|Name=NO15G03320.1|organism=Nannochloropsis oceanica|type=mRNA|length=2428bp|location=Sequence derived from alignment at chr15:967471..969898+ (Nannochloropsis oceanica)
AAAGAAGATGGGTTCTAGTCTAAAGGAGCAAGAGCAGACTGCCACCAAAG
TCTTTGCGTTGGGATTCTGGTACGTATAAGAACAGGTGTCTACCCTTCTT
GCCTTGTCCAAGGGGTGCTTCCCCACGATGCGATCCACGGCAACATCGAA
TGGATCAATCATAACAAATATTTGTTTATCAGATTATCCAATTAAGCAGC
ATGCAAGCATTCATCACCTTATCGTTCTCCCTCCTTTCCTTCCACCCTTC
GTCGTCCCAAGGTCTTCTTTCCTTGCTCCTCGTTCGTCCACGGCGCCATC
ATCCACCTCCCGCCCTGCTGCCTCCTCGTCTTCACCGCCCTCATCCTCAT
CGACATCATCCAAGCGTCGCAAGAATAACTACACCATTTCCGCCCCCACC
ATCACTAGCACCAATACCATAGCCACCCTCTTCCTCTACCTCCTCCTCGC
CCTCCTCCCCTCCCTCGCTCCTGCCCTCCACTTCGGGGACGTCCGTTACT
TTTCGCATGACGCCACCAAGACCTTGCATCACAATTTATCCACGCTTCTT
GAAAAGGGAGATATTAATGGTGCGTACATCATGGGTAGCAAAGACGGGGA
GATCGTCTTACAAGAATCGGTCGGGTATAAACATCAGGGCCCTCACCCGT
TGTTCCGCCTCTTTTCTATGACCAAGCCCGTGACGGCTGTTCTGGCCTTG
CAGCTAGTGGAAGAGGGAAAGATGGGATTAGATGACGAAATTGCCGAGTA
TTTACCAGAGCTTGCTCACTTGAGAGTGTACGATGGTCTGTCGGTATTGA
TGGAGGAGGGCATGACTGGGCTGGCATCGTTGCTTGGTAGAAACAGCAGC
AGCAGCAACAGCAGCAGCAGCAGTAATAGCAGTAGCAATAAACCCCAGCA
CCACCATCATCGACAGAACTTCCTGTCTCACCCCGCCACCAAAAACGCGA
CCATTCGGGAGCTCCTCACGCACACCGCGGGGTTTGCCTACGGCGATAAC
ATCAGCCACCCGATCGACCAAGCCTACGACGAGGCCATGCTCGTGGATTT
CTACGATCACAGTGAATTAGATTTCTTGCAGGAGTTGGCCAGCATTCCCT
TGCTATCCGAGCCAGGAACGGAGTTTCATTATTCGCTTGGCTTTGATGTG
CTAGGGGTGCTGGTGAGCAGGGTGGGAGGGAAGCCTTTGGATGTGTTGAT
GAAGGAGAGGGTTTTCGAGCCGTTAGGGATGAAGGAGACAGGATTCAGCA
TTCCCATGAACAAGATGTGGAGGATGGCGCGCATGAAAATACAAGGGGAC
CTTGGGACGGGCTTTGTGGGAGACTTGGCGGGACTAAGGGCAATGGAGGA
GCCGTCATTCAAGAGTGGAGGAGGTGGTTTGATAAGCACAGCGCAGGATT
ATCTGAAACTAGCGCACATGCTGCTGAATGGAGGAAGGAACGCGAGTGGG
ATGCAGGTATTGGGGGAGGAGAGTGTGCGGGCTATGACGACCAACCAGCT
GTTGCCGGCACAGTTGCCGTATCACATGACGAGCTTTCCTGATTATGAGG
GCAGTGGGTTCGGATATGGGGTGATGGTGATAGGCGAGGAGGAGGTGAGC
TTGTCGAGCCCGCAGGGAGAGGTGAGCTGGGCGGGGATGGCGAGTAATAG
TTGGTGGATCTCGCCGAGCCACGGTACGGCCTTGGTGGCGATGACGCAGC
ATTTGCCGTACAGTAGCGCGATGGAGGAGGTTGTAAAGCCCTTCTTTTAT
GCGCCTTTCCTGGGGGCGGAGACGGAGATGAGGAAAAAGTGGGAGGGGGA
GAAGGAGGGAGGAAGGAATAAGAAGGGCCTGCGAGGAAATGGTCAAGAGA
AGTCGTAGTGTTTGAGGGAGAAAAAGGGATGAGAGGGTGGATGGTGAGGG
CCAGTGTCTGCATCTGTTGTTTAAAAACAAATTGACAGAGAATAATCAAA
ACACCTCATCGGTCTGAAAGGAGTGTATCGTGACTAGGACTAGATAAGGG
AGGACAGGAAAGGAGAGGAAATGAAATCTCAAAAGAGGAGAAACAGCGAA
AAGTGTCAGATGTCTGCGATGATGCGGGGAATGGTATTAATTTTTTGCAG
CAGATTTCCAATAAGCTTGCAAAACAAGAAGGGGGAAAAGAGAAAGAATA
AGAGTGAGTGGATGGCATGATGTAATGTAACTTCCTCCTTCTCCCGAATT
GGATAAAGAGAAATTATATGTACATGGCTGCTGGGCTGGGAGTCAGACGA
AGCGAACATGTTTGGATATAAATACGCGGTGTTATGTGCTTGAGAAGGCA
AGGATGCCAAGAAGTACACGTTTGAGATTTGAAAGGAGAAATTGTGATAT
AATTTGGAGCAAGAGGAAGAAGAAAAGGTGTTCGCTGGCAAAATAGATGG
AAAGCGTTGCCTCCTGCGCCATTTTCAT
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Coding sequence (CDS) from alignment at chr15:967471..969898+

>NO15G03320.1 ID=NO15G03320.1|Name=NO15G03320.1|organism=Nannochloropsis oceanica|type=CDS|length=1659bp|location=Sequence derived from alignment at chr15:967471..969898+ (Nannochloropsis oceanica)
ATGGGTTCTAGTCTAAAGGAGCAAGAGCAGACTGCCACCAAAGTCTTTGC
GTTGGGATTCTGGTCTTCTTTCCTTGCTCCTCGTTCGTCCACGGCGCCAT
CATCCACCTCCCGCCCTGCTGCCTCCTCGTCTTCACCGCCCTCATCCTCA
TCGACATCATCCAAGCGTCGCAAGAATAACTACACCATTTCCGCCCCCAC
CATCACTAGCACCAATACCATAGCCACCCTCTTCCTCTACCTCCTCCTCG
CCCTCCTCCCCTCCCTCGCTCCTGCCCTCCACTTCGGGGACGTCCGTTAC
TTTTCGCATGACGCCACCAAGACCTTGCATCACAATTTATCCACGCTTCT
TGAAAAGGGAGATATTAATGGTGCGTACATCATGGGTAGCAAAGACGGGG
AGATCGTCTTACAAGAATCGGTCGGGTATAAACATCAGGGCCCTCACCCG
TTGTTCCGCCTCTTTTCTATGACCAAGCCCGTGACGGCTGTTCTGGCCTT
GCAGCTAGTGGAAGAGGGAAAGATGGGATTAGATGACGAAATTGCCGAGT
ATTTACCAGAGCTTGCTCACTTGAGAGTGTACGATGGTCTGTCGGTATTG
ATGGAGGAGGGCATGACTGGGCTGGCATCGTTGCTTGGTAGAAACAGCAG
CAGCAGCAACAGCAGCAGCAGCAGTAATAGCAGTAGCAATAAACCCCAGC
ACCACCATCATCGACAGAACTTCCTGTCTCACCCCGCCACCAAAAACGCG
ACCATTCGGGAGCTCCTCACGCACACCGCGGGGTTTGCCTACGGCGATAA
CATCAGCCACCCGATCGACCAAGCCTACGACGAGGCCATGCTCGTGGATT
TCTACGATCACAGTGAATTAGATTTCTTGCAGGAGTTGGCCAGCATTCCC
TTGCTATCCGAGCCAGGAACGGAGTTTCATTATTCGCTTGGCTTTGATGT
GCTAGGGGTGCTGGTGAGCAGGGTGGGAGGGAAGCCTTTGGATGTGTTGA
TGAAGGAGAGGGTTTTCGAGCCGTTAGGGATGAAGGAGACAGGATTCAGC
ATTCCCATGAACAAGATGTGGAGGATGGCGCGCATGAAAATACAAGGGGA
CCTTGGGACGGGCTTTGTGGGAGACTTGGCGGGACTAAGGGCAATGGAGG
AGCCGTCATTCAAGAGTGGAGGAGGTGGTTTGATAAGCACAGCGCAGGAT
TATCTGAAACTAGCGCACATGCTGCTGAATGGAGGAAGGAACGCGAGTGG
GATGCAGGTATTGGGGGAGGAGAGTGTGCGGGCTATGACGACCAACCAGC
TGTTGCCGGCACAGTTGCCGTATCACATGACGAGCTTTCCTGATTATGAG
GGCAGTGGGTTCGGATATGGGGTGATGGTGATAGGCGAGGAGGAGGTGAG
CTTGTCGAGCCCGCAGGGAGAGGTGAGCTGGGCGGGGATGGCGAGTAATA
GTTGGTGGATCTCGCCGAGCCACGGTACGGCCTTGGTGGCGATGACGCAG
CATTTGCCGTACAGTAGCGCGATGGAGGAGGTTGTAAAGCCCTTCTTTTA
TGCGCCTTTCCTGGGGGCGGAGACGGAGATGAGGAAAAAGTGGGAGGGGG
AGAAGGAGGGAGGAAGGAATAAGAAGGGCCTGCGAGGAAATGGTCAAGAG
AAGTCGTAG
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Synonyms
Publications