NO15G03310.1, NO15G03310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G03310.1
Unique NameNO15G03310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length843
Alignment locationchr15:965900..966987 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:965900..966987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G03310.1 vs.
Match: EWM22258.1 (glutathione s-transferase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 369.8 bits (948), Expect = 7.600e-99
Identity = 196/293 (66.89%), Postives = 227/293 (77.47%), Query Frame = 0 
Query:    1 MMASSSLAFA-APATTVQSKVRLWNSGTCPYAQRAWLALLEKEVQFEHKIVDLQNKPEDFIALYASLHPDPTARAKVPILEHCTENSASS------------SSSYDVQIIESNVCAEYIAEAFPNSQGSPLLPSCARDKAVMRLLGEMWTHSGMGNYFPLLLAGQAGKEGEEARA-VELDKMKKGMKIMDTFLRQYGCDVAESPFLLKSGFCLGEVCLAPFVQRLLIVVPHWAGVDLLEMTDKEGWGRLKVWMEAVAWRESTVKSGGTKEETIKNYTRLLAMMK----GAGA 276
            +MASS  A A A AT  Q KVRLWNSGTCPYAQRAWLALLEK V+FEHKIVDLQNKPEDF+ LYASLHPDP+ARAKVPILEHCT +                SS YDVQ+IESNVCAEYIAEAFP+ QG  LLP+   DKA MRLLGE+W  SGMG+YFP+LLA    ++G++AR   EL K+K GM +MD FL QYG D A++PF L+SGFCLGEVCLAPFVQRLL+ +PHW GVD+L+M ++EG  RL+ WM+A+A R STV SGG+KEETIKN+TRLL MMK    GAGA
Sbjct:   16 IMASSRFAHAFAAATKPQPKVRLWNSGTCPYAQRAWLALLEKGVEFEHKIVDLQNKPEDFVELYASLHPDPSARAKVPILEHCTRDLEEEVPPPTPSTFPTVSSLYDVQVIESNVCAEYIAEAFPD-QGHSLLPTRPPDKANMRLLGEIWQTSGMGSYFPILLAA---RDGDQARLDQELTKLKAGMMVMDRFLCQYGADPAKTPFFLESGFCLGEVCLAPFVQRLLVTLPHWVGVDVLDMAEEEGCRRLRRWMQALAERPSTVASGGSKEETIKNFTRLLEMMKPGGGGAGA 304
The following BLAST results are available for this feature:
BLAST of NO15G03310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22258.17.600e-9966.89glutathione s-transferase-like protein [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G03310NO15G03310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G03310.1NO15G03310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G03310.1.cds1NO15G03310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03310.1.cds2NO15G03310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G03310.1 ID=NO15G03310.1|Name=NO15G03310.1|organism=Nannochloropsis oceanica|type=mRNA|length=843bp
ATGATGGCCAGCTCATCCCTTGCATTTGCGGCCCCTGCCACCACTGTCCA
GAGCAAGGTCCGTCTCTGGAACAGCGGCACCTGTCCATACGCTCAGCGCG
CCTGGCTGGCCCTTCTTGAAAAAGAAGTTCAATTTGAACACAAAATTGTA
GACTTGCAGAACAAACCGGAAGATTTCATTGCACTCTATGCCTCCCTCCA
TCCCGACCCGACCGCCCGCGCCAAGGTGCCTATCCTCGAGCACTGCACCG
AAAACTCCGCTTCCTCATCCTCTTCATATGACGTACAAATTATTGAATCA
AATGTATGTGCCGAATATATCGCCGAGGCATTCCCCAACAGTCAAGGATC
CCCCCTCCTTCCTTCTTGCGCTCGCGACAAGGCGGTCATGCGTCTCCTGG
GTGAGATGTGGACACACTCAGGCATGGGCAATTATTTTCCCCTCCTTCTC
GCAGGGCAGGCAGGTAAGGAAGGTGAGGAGGCACGTGCAGTAGAGCTTGA
TAAGATGAAGAAGGGGATGAAGATTATGGATACCTTCTTGCGTCAGTATG
GCTGTGACGTGGCAGAAAGCCCGTTTTTATTGAAGAGTGGGTTTTGTTTA
GGCGAAGTGTGTCTCGCGCCGTTTGTTCAGCGCTTGTTGATTGTCGTGCC
GCATTGGGCCGGAGTGGACTTATTGGAGATGACGGATAAGGAGGGATGGG
GGAGATTGAAGGTGTGGATGGAGGCCGTGGCATGGAGGGAGTCGACGGTT
AAGTCTGGGGGGACGAAGGAGGAGACAATCAAGAACTATACGAGATTGCT
GGCGATGATGAAGGGGGCTGGGGCGAATGAAGCGACGAAGTGA
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protein sequence of NO15G03310.1

>NO15G03310.1-protein ID=NO15G03310.1-protein|Name=NO15G03310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MMASSSLAFAAPATTVQSKVRLWNSGTCPYAQRAWLALLEKEVQFEHKIV
DLQNKPEDFIALYASLHPDPTARAKVPILEHCTENSASSSSSYDVQIIES
NVCAEYIAEAFPNSQGSPLLPSCARDKAVMRLLGEMWTHSGMGNYFPLLL
AGQAGKEGEEARAVELDKMKKGMKIMDTFLRQYGCDVAESPFLLKSGFCL
GEVCLAPFVQRLLIVVPHWAGVDLLEMTDKEGWGRLKVWMEAVAWRESTV
KSGGTKEETIKNYTRLLAMMKGAGANEATK*
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mRNA from alignment at chr15:965900..966987-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G03310.1 ID=NO15G03310.1|Name=NO15G03310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1088bp|location=Sequence derived from alignment at chr15:965900..966987- (Nannochloropsis oceanica)
ATGATGGCCAGCTCATCCCTTGCATTTGCGGCCCCTGCCACCACTGTCCA
GAGCAAGGTATGTGTTTGAATTGAAATGTGTGTGTGTGTCATGAAGATAT
ATTTAGCACCTTGTGATGCGTGTTGTCGATGCGTCGCACCTTCCTTCCAT
GCTTTCTTCTATTCTTTCTCCTTCAATGCTTCATTTTCACTTCCGCGGTC
GAAAGGATTTTCAAAGCGGCCATGTAGAAATTGAACCCTGCACGGTATCC
AATCTAGTCCTTCCTTGTTTCCGCCCCTTACGAAAATCACCATTACTCCT
AGGTCCGTCTCTGGAACAGCGGCACCTGTCCATACGCTCAGCGCGCCTGG
CTGGCCCTTCTTGAAAAAGAAGTTCAATTTGAACACAAAATTGTAGACTT
GCAGAACAAACCGGAAGATTTCATTGCACTCTATGCCTCCCTCCATCCCG
ACCCGACCGCCCGCGCCAAGGTGCCTATCCTCGAGCACTGCACCGAAAAC
TCCGCTTCCTCATCCTCTTCATATGACGTACAAATTATTGAATCAAATGT
ATGTGCCGAATATATCGCCGAGGCATTCCCCAACAGTCAAGGATCCCCCC
TCCTTCCTTCTTGCGCTCGCGACAAGGCGGTCATGCGTCTCCTGGGTGAG
ATGTGGACACACTCAGGCATGGGCAATTATTTTCCCCTCCTTCTCGCAGG
GCAGGCAGGTAAGGAAGGTGAGGAGGCACGTGCAGTAGAGCTTGATAAGA
TGAAGAAGGGGATGAAGATTATGGATACCTTCTTGCGTCAGTATGGCTGT
GACGTGGCAGAAAGCCCGTTTTTATTGAAGAGTGGGTTTTGTTTAGGCGA
AGTGTGTCTCGCGCCGTTTGTTCAGCGCTTGTTGATTGTCGTGCCGCATT
GGGCCGGAGTGGACTTATTGGAGATGACGGATAAGGAGGGATGGGGGAGA
TTGAAGGTGTGGATGGAGGCCGTGGCATGGAGGGAGTCGACGGTTAAGTC
TGGGGGGACGAAGGAGGAGACAATCAAGAACTATACGAGATTGCTGGCGA
TGATGAAGGGGGCTGGGGCGAATGAAGCGACGAAGTGA
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Coding sequence (CDS) from alignment at chr15:965900..966987-

>NO15G03310.1 ID=NO15G03310.1|Name=NO15G03310.1|organism=Nannochloropsis oceanica|type=CDS|length=843bp|location=Sequence derived from alignment at chr15:965900..966987- (Nannochloropsis oceanica)
ATGATGGCCAGCTCATCCCTTGCATTTGCGGCCCCTGCCACCACTGTCCA
GAGCAAGGTCCGTCTCTGGAACAGCGGCACCTGTCCATACGCTCAGCGCG
CCTGGCTGGCCCTTCTTGAAAAAGAAGTTCAATTTGAACACAAAATTGTA
GACTTGCAGAACAAACCGGAAGATTTCATTGCACTCTATGCCTCCCTCCA
TCCCGACCCGACCGCCCGCGCCAAGGTGCCTATCCTCGAGCACTGCACCG
AAAACTCCGCTTCCTCATCCTCTTCATATGACGTACAAATTATTGAATCA
AATGTATGTGCCGAATATATCGCCGAGGCATTCCCCAACAGTCAAGGATC
CCCCCTCCTTCCTTCTTGCGCTCGCGACAAGGCGGTCATGCGTCTCCTGG
GTGAGATGTGGACACACTCAGGCATGGGCAATTATTTTCCCCTCCTTCTC
GCAGGGCAGGCAGGTAAGGAAGGTGAGGAGGCACGTGCAGTAGAGCTTGA
TAAGATGAAGAAGGGGATGAAGATTATGGATACCTTCTTGCGTCAGTATG
GCTGTGACGTGGCAGAAAGCCCGTTTTTATTGAAGAGTGGGTTTTGTTTA
GGCGAAGTGTGTCTCGCGCCGTTTGTTCAGCGCTTGTTGATTGTCGTGCC
GCATTGGGCCGGAGTGGACTTATTGGAGATGACGGATAAGGAGGGATGGG
GGAGATTGAAGGTGTGGATGGAGGCCGTGGCATGGAGGGAGTCGACGGTT
AAGTCTGGGGGGACGAAGGAGGAGACAATCAAGAACTATACGAGATTGCT
GGCGATGATGAAGGGGGCTGGGGCGAATGAAGCGACGAAGTGA
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Synonyms
Publications