NO15G03190.1, NO15G03190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G03190.1
Unique NameNO15G03190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length937
Alignment locationchr15:901937..903186 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:901937..903186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G03190.1 vs.
Match: XP_005855137.1 (hypothetical protein NGA_0090400 [Nannochloropsis gaditana CCMP526]; EKU21219.1 hypothetical protein NGA_0090400 [Nannochloropsis gaditana CCMP526]; EWM22277.1 hypothetical protein Naga_100827g2 [Nannochloropsis gaditana])

HSP 1 Score: 132.9 bits (333), Expect = 7.000e-28
Identity = 68/129 (52.71%), Postives = 91/129 (70.54%), Query Frame = 0 
Query:    1 MFASRRALFGSAAAPV----HSRAFSSFPPPGGRNPWLTDKSMYPLVGITAATVLLGAWYGPHYLYTSPEKQAPKRRQTTGEIPQKKAYEKGPPYDENLYQRCDELSKDIYAYTIKDKKTVEDEKAGKV 126
            MFA RR L G++        H RAF+S  P GG NPWL DKS+YPL+GI   TVL+G WYGP+Y Y SPEKQAP RR+T+  + QK+ +E G P+ E LY++ ++L+K IY  T+KD +TV+DE+ GK+
Sbjct:    1 MFALRRTLVGTSPLSRFHQGHRRAFTS--PSGGTNPWLNDKSLYPLLGIVGLTVLVGVWYGPYYHYKSPEKQAPMRRRTS-VLTQKEPHEAGKPFGEELYKKSEDLTKGIYGVTVKDTETVKDEEKGKL 126
The following BLAST results are available for this feature:
BLAST of NO15G03190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855137.17.000e-2852.71hypothetical protein NGA_0090400 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G03190NO15G03190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G03190.1NO15G03190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G03190.1.cds1NO15G03190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03190.1.cds2NO15G03190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03190.1.cds3NO15G03190.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G03190.1 ID=NO15G03190.1|Name=NO15G03190.1|organism=Nannochloropsis oceanica|type=mRNA|length=937bp
AAACATAGCCACGCACCATCATCGTAGGTACAGCATGTTCGCCTCACGTC
GTGCCCTCTTCGGGAGTGCTGCTGCACCTGTCCACAGTCGCGCTTTTTCT
TCCTTTCCCCCGCCTGGTGGCAGGAATCCTTGGCTGACCGATAAGAGTAT
GTACCCGCTCGTAGGCATTACAGCCGCAACAGTCCTTTTAGGGGCTTGGT
ACGGGCCTCACTATTTGTACACCTCGCCCGAAAAACAAGCCCCCAAGCGC
CGCCAAACCACCGGCGAAATTCCTCAGAAAAAGGCCTACGAGAAAGGCCC
GCCCTATGATGAAAATTTGTACCAACGATGCGATGAGCTGTCCAAGGATA
TCTATGCCTATACAATCAAGGATAAGAAGACCGTCGAAGACGAGAAGGCG
GGCAAGGTTTAGATGGGTCTGACGTACGAAGAGTTCACCAAAGAAGAGGG
GAAATTTTAATATGGGGCAATATAAAGTTTTCTTTTAGAAAGACGGGAAA
ATGGAGGAATTGTGCAGTTTGAGGCACTGCCTATTAAGAGTCAATCGAAG
CACATACCCCAAATGTAAGCATTCAAAAAGTGATAGATGAAGCGTTCACA
TCAGTGCTCCCACGCCGTCTTAACGGACTATACGTGGGAATTATCGATTT
TTTTCTTTTTCACTTTTTCCCACTTTCATCTCCAACGACAACGGCTTCAA
GGTTTAGGGATTGGGACGAGGACAAGGAAGATGAGGACCAGGACGAGCAC
GTTGAGGAATTGCGTCGCATCATGACGGTGCGCTGGCCTGTTTAGAGCGG
GATGGCGTCATCGTCCCGCGAAAACGCCAGTGGCCTGATGCCGTCAGCTT
CCCCGTCATTCGGGGCGGGCTTATTTTGATGCTCAAAATATGATAGAAGG
AGATTAAAACTCCAAAAAAGTAAAAAGAGCAAAAAAC
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protein sequence of NO15G03190.1

>NO15G03190.1-protein ID=NO15G03190.1-protein|Name=NO15G03190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MFASRRALFGSAAAPVHSRAFSSFPPPGGRNPWLTDKSMYPLVGITAATV
LLGAWYGPHYLYTSPEKQAPKRRQTTGEIPQKKAYEKGPPYDENLYQRCD
ELSKDIYAYTIKDKKTVEDEKAGKV*
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mRNA from alignment at chr15:901937..903186+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G03190.1 ID=NO15G03190.1|Name=NO15G03190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1250bp|location=Sequence derived from alignment at chr15:901937..903186+ (Nannochloropsis oceanica)
AAACATAGCCACGCACCATCATCGTAGGTACAGCATGTTCGCCTCACGTC
GTGCCCTCTTCGGGAGTGCTGCTGCACCTGTCCACAGTCGCGCTTTTTCT
TCCTTTCCCCCGCCTGGTGGCAGGAATCCTTGGCTGACCGATAAGAGTGT
GAGTTATTTCGTGGAGGTCAATGGGCGGGTGTGCTCGTGTATCAGAATCC
CTCTGAGCGCGATATATTATCTCACCTGGCTTATTTACGCCCCATCCCTC
CCCCCTAAATACAGATGTACCCGCTCGTAGGCATTACAGCCGCAACAGTC
CTTTTAGGGGCTTGGTACGGGCCTCACTATTTGTACACCTCGCCCGAAAA
ACAGTAAGTTATTGGTAGGAAGGGGAGTGGGGAAGAGCGAAGACAGAAGA
TGGTGATCTGATTTTTTTCCTCGTATGATTTATGTGTATGCCTACGTGTC
TTGTTGCAGGCGAAAACAGAGATGTCATGCTCCAATAGTCGTCACATTTT
TATCCAAACCTGAAATCTATTTCCTCACCACGTCTGCTTACCTGAAACAG
AGCCCCCAAGCGCCGCCAAACCACCGGCGAAATTCCTCAGAAAAAGGCCT
ACGAGAAAGGCCCGCCCTATGATGAAAATTTGTACCAACGATGCGATGAG
CTGTCCAAGGATATCTATGCCTATACAATCAAGGATAAGAAGACCGTCGA
AGACGAGAAGGCGGGCAAGGTTTAGATGGGTCTGACGTACGAAGAGTTCA
CCAAAGAAGAGGGGAAATTTTAATATGGGGCAATATAAAGTTTTCTTTTA
GAAAGACGGGAAAATGGAGGAATTGTGCAGTTTGAGGCACTGCCTATTAA
GAGTCAATCGAAGCACATACCCCAAATGTAAGCATTCAAAAAGTGATAGA
TGAAGCGTTCACATCAGTGCTCCCACGCCGTCTTAACGGACTATACGTGG
GAATTATCGATTTTTTTCTTTTTCACTTTTTCCCACTTTCATCTCCAACG
ACAACGGCTTCAAGGTTTAGGGATTGGGACGAGGACAAGGAAGATGAGGA
CCAGGACGAGCACGTTGAGGAATTGCGTCGCATCATGACGGTGCGCTGGC
CTGTTTAGAGCGGGATGGCGTCATCGTCCCGCGAAAACGCCAGTGGCCTG
ATGCCGTCAGCTTCCCCGTCATTCGGGGCGGGCTTATTTTGATGCTCAAA
ATATGATAGAAGGAGATTAAAACTCCAAAAAAGTAAAAAGAGCAAAAAAC
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Coding sequence (CDS) from alignment at chr15:901937..903186+

>NO15G03190.1 ID=NO15G03190.1|Name=NO15G03190.1|organism=Nannochloropsis oceanica|type=CDS|length=378bp|location=Sequence derived from alignment at chr15:901937..903186+ (Nannochloropsis oceanica)
ATGTTCGCCTCACGTCGTGCCCTCTTCGGGAGTGCTGCTGCACCTGTCCA
CAGTCGCGCTTTTTCTTCCTTTCCCCCGCCTGGTGGCAGGAATCCTTGGC
TGACCGATAAGAGTATGTACCCGCTCGTAGGCATTACAGCCGCAACAGTC
CTTTTAGGGGCTTGGTACGGGCCTCACTATTTGTACACCTCGCCCGAAAA
ACAAGCCCCCAAGCGCCGCCAAACCACCGGCGAAATTCCTCAGAAAAAGG
CCTACGAGAAAGGCCCGCCCTATGATGAAAATTTGTACCAACGATGCGAT
GAGCTGTCCAAGGATATCTATGCCTATACAATCAAGGATAAGAAGACCGT
CGAAGACGAGAAGGCGGGCAAGGTTTAG
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Synonyms
Publications